Array 1 33066-33513 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDI02000064.1 Pseudomonas aeruginosa strain PABL032 NODE_64_length_33602_cov_50.8927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33066 28 100.0 32 ............................ GCCATAAAGGATTAGGTAGCGCCCGACATGCC 33126 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 33186 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 33246 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 33306 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 33366 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 33426 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 33486 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TCGGACTCAGGCGGACTTGCGCCAGGCTGACCTGCCCCCCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCGAGCAGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25380-24026 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDI02000074.1 Pseudomonas aeruginosa strain PABL032 NODE_74_length_25524_cov_73.2786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25379 28 100.0 32 ............................ AGTGAGAAGAGAACTGAAGGCATTCAGGCGAC 25319 28 100.0 33 ............................ TTCTGCGCCTTCTCGCCCTCGTCCTGGATTTCC 25258 28 100.0 32 ............................ AGATCAACTATCCGCGGGAGTTGGCATGACGT 25198 28 100.0 32 ............................ AACCCTCGATGACGCATATCGCGAGGCGCTGG 25138 28 100.0 33 ............................ AATGAGGTGCTGAGCCAGTCGTGCCCGCCCTTC 25077 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 25017 28 100.0 32 ............................ GCGCAGTTTCGGAGCACGAAGATCATGTAACG 24957 28 100.0 32 ............................ TTCCCTAGTCAGGTGCCGCGCTCCCGGCTCGT 24897 28 100.0 32 ............................ ACTCTTCGGGCGTATCGAACTCGACCCACTTC 24837 28 100.0 32 ............................ TACGACCAGGCGCAACGCAAAGCGCGCGTCGT 24777 28 100.0 32 ............................ AACCGCAGATGGCGCTGGACCGGGGCGTGCCG 24717 28 96.4 33 ..................C......... AGGTTGACCAGCATGGCCGGCATCGACAGCAGT 24656 28 100.0 33 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCAGT 24595 28 100.0 33 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCAGT 24534 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 24474 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 24414 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 24353 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 24293 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 24233 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 24173 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 24113 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 24053 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : TGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCTGTGGGGAGGTTCTGGGTTTGGCATAGAGCCGAGGGCTGCCGGAAGAGAGTGGGCGACTCCGGAAGTTCCCGGATGGAAAGGGCTATAGAGAAGTCGAGGTCGGCCAGTTGTGCCAAATCAGTGCAAGACCGGAATCGACACCAGAAAGAAAAGAACCCGCGTTTTCGCGGGCTCTTTGGCATTACGTTTAATAGACCGAAACGTCAAAGGTAAGTCGCTTGCCTGTCCTATGCTCGTACCTCTCCACCGCCTTCCTATGGCTCTCAGAAGAGAAGCTGCCCTCGGCGAATTCGCATTCAACGCAAATGGTAGTAACGCGTCCATCCTTTCCTTCCGCGTTCACTTCAAAGCCCCAGTGAATGCGCCTGACGACAAAGTCCTCCATCCCCTTTTCACCATCACGAAGGATCGAAATGTAGTCACCCTTTTGCGGGAGTGCCTCCATCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 129-703 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDI02000104.1 Pseudomonas aeruginosa strain PABL032 NODE_104_length_10481_cov_66.1644, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 129 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 189 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 249 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 309 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 369 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 430 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 490 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 550 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 610 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [622] 676 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAGAATTTGCTGCAAGTTGGCGAACTCGCCAGCAGCAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAGCTGGGGGCAGGTCACAGGTCAAGGCCATGCG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10337-9227 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVDI02000104.1 Pseudomonas aeruginosa strain PABL032 NODE_104_length_10481_cov_66.1644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10336 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 10276 28 100.0 32 ............................ TGTACAAAGGCGTTTACCGCAGAGTTGATTCC 10216 28 100.0 32 ............................ AGTTGCTGCTCGAACAGTGTGAGCCAGACGTG 10156 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 10096 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 10036 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 9976 28 100.0 32 ............................ TAGCCAGATTGCTGTGCGGCGACGGTTCATTC 9916 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 9856 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 9795 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 9735 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 9675 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 9615 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 9555 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 9495 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 9435 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 9375 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 9314 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 9254 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //