Array 1 187714-183122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPHX01000028.1 Acinetobacter baumannii MRSN 4106 19_dA, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 187713 30 96.7 30 ............................A. TTCCGCAACTCGCTACTTCCCTGATGCAGA 187653 30 96.7 30 .............................G GAAGATTTGCTTATGGCGTTCTGGAAAGAA 187593 30 96.7 30 ............................A. TGCTTAGTAATGCGCAAAAACGGTCATCCA 187533 30 93.3 30 ............................AG CAGAAGAACGCAGAAAAGCGAGAAGCTTAA 187473 30 96.7 30 ............................A. CTTGAAAGGCTTGAGCTTAAAGCTTTTTAC 187413 30 96.7 30 .............................A CAGCTGGCCGCGTATATAACGGCTCAGTAT 187353 30 93.3 30 ............................AC AACTCGATGTTGGGTATGCAGAGAGCCTTG 187293 30 93.3 30 ............................AA ACTTACACTTCTCAGCGTCAAACCATGCGT 187233 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 187173 30 96.7 30 .............................G GCAGAACTTTTCATGACGCTCATTCTCTAA 187113 30 96.7 30 ............................A. ACCTATCAACGTTAAACCAACGATTGCCAG 187053 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 186993 30 96.7 30 ............................A. TGGGATGTTATGAATATTCGACATTACCAA 186933 30 96.7 30 ............................A. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 186873 30 100.0 30 .............................. CAAACGCTTCAACCAGCCACGTCTTTGAAG 186813 30 96.7 30 .............................C TTCCGCCAAATTCTAGGAGGTTAACATGCT 186753 30 100.0 30 .............................. GTGCATACTTATTGCCGCCAGCAAGTAAAC 186693 30 96.7 30 .............................C CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 186633 30 93.3 30 ............................AA GTTTCGGCCTAATGGATGCGGTCTTGAAAA 186573 30 93.3 30 ............................AA GGACTATCCGTCCCTTTGCCGTTTTTGTAC 186513 30 93.3 30 ............................AC CCTCGGGTGGTTTTTTATTGAGGTGATCAT 186453 30 93.3 30 ............................AG TGGCGCGTTCAAGCGTGCCATTGAAGCATA 186393 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 186333 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 186273 30 96.7 30 .............................C AGCTCCCGATTCAACATCCAACAACATGCT 186213 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 186153 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 186093 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 186033 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 185973 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 185913 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 185853 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 185793 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 185733 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 185673 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 185613 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 185553 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 185493 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 185433 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 185373 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 185313 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 185253 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 185193 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 185133 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 185073 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 185013 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 184953 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 184893 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 184833 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 184773 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 184713 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 184653 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 184593 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 184533 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 184473 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 184413 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 184353 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 184293 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 184233 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 184172 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 184112 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 184052 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 183992 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 183932 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 183872 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 183812 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 183752 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 183692 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 183631 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 183571 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 183511 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 183451 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 183391 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 183331 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 183271 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 183211 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 183151 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 77 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //