Array 1 7893-6328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUAH010000018.1 Capnocytophaga genosp. AHN8471 strain AHN9576 AHN9576_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 7892 46 97.8 30 ................................T............. GGGCTAAAAGTTTGTCCCAGTATTTCGTTA 7816 46 100.0 30 .............................................. GCTCCTACTGTATGGGAATGAGAGAAGAAT 7740 46 97.8 29 ................................T............. TGGCAGAAAAAGCCATTAACAAGGAAGCT 7665 46 100.0 30 .............................................. GAAAGTGCTTGAAATGAGAAAATACAACCT 7589 46 100.0 31 .............................................. TATACCCCAAAACCACACCGCAAAGATAATA 7512 46 100.0 30 .............................................. TGAAATTTCTAATAAAAGAAATACAATCAT 7436 46 100.0 30 .............................................. GAAAAACACGGACGTAGAAAACGAAGAGCT 7360 46 100.0 30 .............................................. TAAGGGGGCTTTTGCTTTTTTTGCTTTTTT 7284 46 100.0 30 .............................................. GCTTTGTATATCTCTTGAAAAGAAAGTCCT 7208 46 100.0 30 .............................................. ATGGAAATGCAGGTACGGGTATCAATGTAC 7132 46 100.0 30 .............................................. ATGGTTAAAGCTTATGCAATCCATTTAGAA 7056 46 100.0 30 .............................................. GGGAGTTTGATTATGATAGTTATTCAAATT 6980 46 100.0 30 .............................................. GAGACACCTCATTATTATATTTGAAAAGTT 6904 46 100.0 29 .............................................. ATGGTTCGTAGTTTCATTCTTGAAGAGAT 6829 46 100.0 30 .............................................. TCTTTTTTTTGCCATAAAAAACCATCAAAC 6753 46 100.0 30 .............................................. CTGCTAAGAAAGAGGAAGCTATCCGCTTGT 6677 46 100.0 30 .............................................. CAACATCGTGCGCTTTTCGGTTCACCTCGA 6601 46 100.0 30 .............................................. ATTAAGAAAAAAAATATGCAAATCAAACCT 6525 46 100.0 30 .............................................. CTATTCGCTGTACACTGCTATTAAATTCCT 6449 46 100.0 30 .............................................. AAAGACGTGTTTACTAACATTCATCATTCA 6373 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 21 46 99.8 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Left flank : AACAGTCGATATGTTGATGGACGGTTACAAGAAGTACGGCGTTGGATGGCTACAACAAACAATGGACGGGCTCTTGGCGGCGAGAGATTCAAGACAGTTTATGAATTCTTTAACCGAAGAACAAGCGAAAGAGTACGCGCACAAGCAGAGGGAAAGGCTGATGAATACATAATTGATTGTCAGCGAGAGGAACAGCGGAGTGTCATTGAATTTGCTAAACAAAACAACTTGTGGTATAGTCATTCAGATGTTGAACGATTAATTGATGGGTGTGAATGTGTAGGTTTAGGTCAAGAGTCAGTCGTTCATCTTTTACGAGATAAAACGACTGTATTGAAGCAAATGACTGGTCGTAATTTTGACCACTTAAATTATCCAATGGAAGCAGTTGTGCGTAATATAGCTATGTATAACGAATTGTTTCCAAACTCATATCTTCATTTAGAAGGTATATCAACAATCGATAGAAGAGAAGGTGAACAAGTATGTTTGTTGGTGAC # Right flank : CTCAATCTTTTAAAAGTTTTAGTATCAATCGGTTTTGCTTAAAAACAGTACTGAAAAACCTCCTCTTTTACCTTATAAACAAAGGCTAAAGAGGAGGTTTTACTTTTCTATTCTTCTTAAAAAAGCTCTAATTGCACATAGGTTTCGGGAGCTGCTGTTTCTCTCTGACAATAAAAAAACTCCATATCGCCAAACTGCTTATCAGTTAGGCACATAATAGCTATATTGCCATACTGAGGTAAGTTTTGTTTTACACGATTGATATGCACTTGGGCATTCTCCCTACTGGGGCAATGCCTTATGTACATCGAAAATTGAAAGAGCGTAAAGCCGTCCTTTATAAGTTTATCACGAAAGTTCTGTGCTTCTTTACGCATCTTCTTCGTTTCTGTTGGCAAATCGTATAATACTAATACCCACATAATTCTATAAGCATTATATCGTTCGGCTATGATCATAATTCAGGATAAGCTATCAGTCGCTTTTCACCCGTATAGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 8706-8508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEUAH010000018.1 Capnocytophaga genosp. AHN8471 strain AHN9576 AHN9576_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 8705 46 100.0 30 .............................................. GTTTTTAATTTTGTTGCTAACTTAAGAAAT 8629 46 97.8 30 ................................T............. CAATAAAAATTTTTCTGTGGCAGTGGTAAA 8553 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 3 46 99.3 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Left flank : ATAGCCTATGGAGATCATTTGGTAACCCTACCCTTGTACTTAACAGGGATGGTGATTATCAGTTATCTTTTTGTGAGAGAGAGACCCCAAGAATGCCTACAAAGTGCCTTACGCATTGTTCTTCCGTTTACGGGGTTAATGCTTATTGCAGGGAGTCTGCCTGATGCGCATACGAGCTTGGCACTCGGTTATATTGCTGGCACTGCGGTGGCTTTCCTATTGGGAATGTGCATTGCTACTGTGAGCAAAACGTACCAAAAGATAGGTTTATCCGCGTTGGCTTTTCTGCTGGTAGTTGCCGTACGGTTGTCGTTTTCAGCGGAGTTTCAATATTTGATAGGCGTACATTGGTATACCTTAGGAAGTTAATCATCTAATAGAATATAGAAAGAGGTTGCTCAGAAGTCTGGGCAACCTTTTTTATGCTTTGTTACTTATAAAATATTTTTTTTGTATCTTTGCGATTTATTGTTGAACTATTTGATAAATTAAACATTTAT # Right flank : TATAATTAAAAGTCGTAGTCATAAGTATATTAAAAAGATAACATATAAAAATGGAAAAACAAGATACATCTACGAGCAAAAAGTTGCAAATCAAGCCACACAACAACAATCTACTAACAGTCGATATGTTGATGGACGGTTACAAGAAGTACGGCGTTGGATGGCTACAACAAACAATGGACGGGCTCTTGGCGGCGAGAGATTCAAGACAGTTTATGAATTCTTTAACCGAAGAACAAGCGAAAGAGTACGCGCACAAGCAGAGGGAAAGGCTGATGAATACATAATTGATTGTCAGCGAGAGGAACAGCGGAGTGTCATTGAATTTGCTAAACAAAACAACTTGTGGTATAGTCATTCAGATGTTGAACGATTAATTGATGGGTGTGAATGTGTAGGTTTAGGTCAAGAGTCAGTCGTTCATCTTTTACGAGATAAAACGACTGTATTGAAGCAAATGACTGGTCGTAATTTTGACCACTTAAATTATCCAATGGAAG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //