Array 1 122686-123814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOHV010000017.1 Chromobacterium piscinae strain DSM 23278 contig_0000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122686 29 100.0 32 ............................. ATTGTGAAATGGCCGTCGTCGGTGCAGGTATC 122747 29 100.0 33 ............................. CAGTTGACGATGGAGGATTCGGCATGAATAAGC 122809 29 100.0 32 ............................. CCGGCCACCAGCCCGCTGACCTGGTTCAGGAC 122870 29 100.0 32 ............................. CTGGTTGCAGCGCTGAATGGTGGCGTCGAATG 122931 29 100.0 32 ............................. GGTTTGGTTGATCGCCATAGCAAACAGGACCC 122992 29 100.0 32 ............................. CTCGGCGTCAAATTGGGGATCGCCGGGCTGGG 123053 29 100.0 32 ............................. CCGTCCGGCACCAGGCGCCGAATCTTGGCCGG 123114 29 100.0 32 ............................. CTCGGTACACGCAGCAACGCGTCCGCAACAGC 123175 29 100.0 33 ............................. CAGGGAGTGGAGATTCAGGATGCGTAATCTTGA 123237 29 100.0 32 ............................. TCAGGCTTACGCTGTCAACGCCTGGCTGATGC 123298 29 100.0 32 ............................. GCGCGTTGTTCGCGGCCTGAGCAAAACACAAA 123359 29 100.0 32 ............................. TAGTAAGTAACACTCCAGGCCCAGCTGCAGGG 123420 29 100.0 32 ............................. AAAAACGCCTTCTTCGCGGGTTCTTCGTGTAT 123481 29 100.0 32 ............................. GTGCTGGGGACCCATTACCGCGACTCTGTCGA 123542 29 100.0 32 ............................. TGGACCGTTGGGATGGTGATGTCGGTGGCGAG 123603 29 89.7 32 ............CA...........G... GCCAGGGAAATCGGATTTGTGATCCCCAAGGA 123664 29 86.2 32 .......T....CAT.............. AAATGGGCCGACGTCGCCCGCCTCTACAACGG 123725 29 86.2 32 ............CA...........G..A AAGCTAGTGCCTCAAGGCTTGAGGGTTCGAGA 123786 29 69.0 0 A.A.........GTT..........GTGA | ========== ====== ====== ====== ============================= ================================= ================== 19 29 96.4 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : GCCAGAATGCGCGCCAGCGTGGTCTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGACCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGAGGCGGGCATGAAAAAAGCGCCGGGCCGGTGCTTTTTGCTTGCATGTCGATGGAATGACGGTAGGCTATGGAGCCTGGAAACCTTGCCGTGCAAGCTCCGTGCTTCGTTTTTCGAAATGATGGCGAAGGGAAGATTTCCTGATGCCGTGTGGCGCTTGGCGGGACGATTTGAGCGGCGGTTTTCGACCAGAAAAATCGGTAGAATTTTGAGGTGGTTTTTTATCTTTAAAAATCAGCAGTTTGAAAATGGT # Right flank : ACGGGGGACGGCTGGAGTGGTGTCGCGGCGTTGCCAGCCTGGCCGCGTCCGAAAACAAAAAAGCGCCCCTTGGGGCGCTTTTTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCAACCAAGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTAACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTATCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCGTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131086-131967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOHV010000017.1 Chromobacterium piscinae strain DSM 23278 contig_0000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131086 29 100.0 32 ............................. CCCTGCGGATGCTGAATTTGCATCTGCTACGG 131147 29 100.0 32 ............................. GCGCGCGCCTGGTTGTCGGCCTTGGCGGAATC 131208 29 100.0 32 ............................. CGGATGATGCGGGACCAGGCGGCGCAGGCGAA 131269 29 100.0 32 ............................. CGAACTGAATGAAATTCCTGGCCTGCCCTTCG 131330 29 100.0 32 ............................. GCGGAATGGGCGCTGCGTCGCTTACTCTCCTC 131391 29 100.0 32 ............................. CATGAGCCACGCCCGCGCCCACTTCCAGCGGG 131452 29 100.0 32 ............................. GGGTCAGCGCCGGCATCGATGTGGCGCTGGCC 131513 29 100.0 32 ............................. TCCGGAGACGCCCGCCGGGTTGAGTCGCTGGC 131574 29 100.0 32 ............................. CTGTGGAGCAACTTCCATGAATGCCCGATTCT 131635 29 100.0 32 ............................. GACATCCACGCGCTGATCCAGTCATTGCGGGA 131696 29 96.6 32 ......T...................... GACGGCGCGCAGGGCAAGACCGTCAATGCCGA 131757 29 100.0 32 ............................. GCGGCCTCGGTCCGCAAATGATGGCGATCATC 131818 29 96.6 31 .........G................... TCGGCCCGCCGGCTGGGGCGCATGCAAGAGC 131878 29 100.0 32 ............................. ATCGCCAACGTCTACAAGGTGCCGATCAAGAA 131939 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCATGAGCGGCTGGCCACCCAGTCGTTGACCGGTTTCTCCTGGCTCAACCCCGAGCGCACGCTGCAGCAAACCCGTTTTGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCTCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCACCCAGACTGCTGCAGGTGGCGGATTGCGCCGGTAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCATGGAGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTAGGGTGGGTTTTTATCTTTAGAAATCAGAATCTTGAGATTGGT # Right flank : GGCGGTATGCACATTTGCGTCCGGTTTGGTTGTGTGTTTCCCACGCCCCTGGCTCGAGAAAAGACGTGGCTTTCTTTATGGGTAGTGATACGGGATTTCAAAAATATGGGGATTGAAGCGTGGGCGATGGTTGTGGGAATCGTCAGGCCAAACGGCAGGTACAACTCTCGACCCTGCAAGTTGCTGCCTAGAGAAGTTTCATGGCATGAGTTATGTCAATATTCTTATTGACCAAAATGACAATGTGCTTTTGGGCTGATAGCCTGCGCGCTTGGGTTGGTTCCAGTTGGCAGATCGGTTTTCACTGGGAGAGGCGATGCAGACAGAGTTGGACGGCAAAAAAGAGGTTCATGAACCCTCCAGTGTAACCGGACTAAGTTTTGATGATCTGCACCCCGCGGTCCGACAGCTATGGGCCAAAAGCGGTGACCCGACTGGCCATGGCCTGTTATGTCACATGCTGGACGTGGCTGCGGTGACCAGAGCTTTGCTCGACTACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 140815-142673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJOHV010000017.1 Chromobacterium piscinae strain DSM 23278 contig_0000017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 140815 29 100.0 32 ............................. CTTGGCCGTGCGCACGCCGGACAGCAGGTCAA 140876 29 100.0 32 ............................. TCCGTACAACGGGCGCTTGCTGCCGCCGGTGA 140937 29 100.0 32 ............................. CCGCAGAACGACGCCGCCGCCCAGGCTGCTGC 140998 29 100.0 32 ............................. CCAAACCGCTTTTGCGCCCACTGCAGCGGGAA 141059 29 100.0 32 ............................. GTTCAGCGCTGGCTCCGGTATTGCGAGGTGAC 141120 29 100.0 32 ............................. AGCCATGACGAGAAAGCTATTACATGACCTTG 141181 29 100.0 32 ............................. TCGAGCTGGCCGACGCCGTCATTCGGATATTC 141242 29 100.0 32 ............................. CCGTGTCATCGAATTTCCAGATGATGTTCGGC 141303 29 100.0 32 ............................. TAGCCCGCCACATTTAATCCTCCCGGAGATAA 141364 29 100.0 32 ............................. CCGGCAGGCATTAAAGCGCCGCATGACCACGT 141425 29 100.0 32 ............................. CCAGAGACCTTTGTCGACAGCCCGCAGGCCAT 141486 29 100.0 32 ............................. GAATGATCGGTCTCATACAGTTCAATGCCGAA 141547 29 100.0 32 ............................. TGCCACCGTTTACCGTGACAGTGTTTGTTCCC 141608 29 100.0 32 ............................. GGCGAGCGCGTGCCGGTGCAGGAGCAGTTCCT 141669 29 100.0 32 ............................. GCGATCAACGGATTTAAATTCCACTTCAACGC 141730 29 100.0 31 ............................. ATGGCGGTGTGGCCCCACTGCGAGCCTTTGC 141790 29 100.0 32 ............................. GTTTGGTAAACATCCAGCAGCACCGTCTTGCC 141851 29 100.0 32 ............................. CGGCCATCTCCAAGCTCAAGGAAATGAGCTAC 141912 29 100.0 33 ............................. AATCAGTTTTGGGGTCGCATGGAGGTTTACAAC 141974 29 100.0 32 ............................. ACCGACATCCAGCGGCTCAAGCAGATCCTGCC 142035 29 100.0 32 ............................. ACGGACATGTCAGGCCTTGGCAGCTGCAGCAG 142096 29 100.0 32 ............................. TACGAAGCCCAGCAGCTTCGCAATCAGGGCAA 142157 29 100.0 32 ............................. CCGTGGGTTCGGATGAAGAGGTTTGTCGAGGC 142218 29 100.0 32 ............................. CGCACGCCTGAGCGCATTAAAACCATTATGAA 142279 29 100.0 32 ............................. AATAGTGCTTTTGGACGACTCTTGGCACGAGC 142340 29 100.0 32 ............................. TGGGCGGAGTTTGAGTGCCAGCCGGCTCCGGT 142401 29 100.0 32 ............................. AATCTGTTTTAGGATCGCACGATGGTTTATCA 142462 29 100.0 32 ............................. TCGGTAAGAGATGGCGGCATCAGCGGCAGGGT 142523 29 100.0 32 ............................. CAGGCCTTTTGCGCGCTTTTGGAATTTGGGTT 142584 29 100.0 32 ............................. CAATGAGCAGATTACCACCCGGCTGGCGGTCG 142645 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGTTGCTGGAAATCCGCGCCGGGGTCTACGTTGGAAACTACAACCGCAAGATCCGCGATTACCTATGGCAGCAGGTGGAGGACGGGTTGGAAGATGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACGCTTGGGGCCAACCGCCGCATGCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTCTGCCGCCACCGGTACCGGAAGAGAGCAGTGAATAGCATGAGGATCGCTTTGTTCCAGAGGGCGATTTGGCTCTTTGAAAATCGGTAGATTTTTAGGTGGCGTTTTTGTTTTTCAAAATCAATTGCTTGCAATTGGT # Right flank : GGGTGCCGCTGTCAGCTACGCGCCGATTTTTACCTGTGAACCGCAGTCCCGCCACCCGCTAAAGACCGCATGCGCGCGCGCCACGCATGGAAAGGTTTGTCATCCAATCTTTCCGCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAGGCTGAAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCTTTGTTTCGAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTCTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGTTGATCTCCCCCCGCTGGCGCTGGCCGGCCATCCTCGCCGGCGTGTGGCTGGGGTCGGTGATCTGGGGCATGGTTGCGCATGGCCTGAGTCCGGCGGGGGCGGCGGCTTTCGCCAGCATCGAGGTGGTCAGCGGCGCCATGGGCTGCTGGGTGGCCAGCCTGGGGCGCAACGATCCGGATACCCCGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //