Array 1 295093-296095 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMT01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 206 NODE_2_length_523318_cov_12.5955, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 295093 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 295154 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 295215 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 295276 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 295337 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 295398 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 295459 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 295520 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 295581 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 295642 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 295703 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 295764 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 295825 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 295886 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 295947 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 296008 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 296068 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 312765-314502 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMT01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 206 NODE_2_length_523318_cov_12.5955, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 312765 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 312826 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 312887 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 312948 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 313009 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 313070 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 313131 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 313192 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 313253 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 313314 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 313375 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 313436 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 313497 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 313558 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 313619 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 313680 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 313741 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 313802 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 313863 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 313924 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 313985 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 314046 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 314107 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 314168 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 314229 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 314290 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 314351 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 314412 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 314473 29 100.0 0 ............................. | A [314500] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //