Array 1 1198018-1205057 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXA01000002.1 Clostridium perfringens strain NCTC10578, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1198018 29 100.0 39 ............................. TTACATGAGCAACTACAAAGGATATAATCATATTTGCGA 1198086 29 100.0 41 ............................. TAAAAAAAAGCAAGTAGAAGAGTTTACAAGTCTTTTTGTTG 1198156 29 100.0 37 ............................. ACTCCAAATACAACAAAAGACAATATAAAAATTGTCA 1198222 29 100.0 36 ............................. TTTCTTTTCCTGTGTTTAGCAATGCTCCGCTAATTC 1198287 29 100.0 37 ............................. TGCTAAATGTAGTAGATAGTTTTGGAGAGTATAAAAC 1198353 29 100.0 36 ............................. ATCTAAAACCGCTAATAATCTTTCAGTATATAAATC 1198418 29 100.0 37 ............................. CCTCCTAACTTGGTTGAATCTTAAATCTTATTTGTAC 1198484 29 100.0 37 ............................. TAGTGATTACATAAAGTATTTATAATATCTATGCCTG 1198550 29 100.0 36 ............................. CTAATTTGCCTTAATGTCTTATCTACTTTAGTTCCA 1198615 29 100.0 37 ............................. TAGACTTTGCTTATCTTAGCGATAAGTAGGGTGTAAC 1198681 29 100.0 36 ............................. TATATACCATAAAGATGAACTTTTCTATTTTTTCTA 1198746 29 100.0 37 ............................. CAAAATGCTACATATAAAATGCAATGGGAGTGTTTGA 1198812 29 100.0 37 ............................. TTACTATACTTATATTATATATTATAAAAGCTGTTAT 1198878 29 100.0 38 ............................. ATAGCTAAAGCAACTAATGCTACGTTAGAACTATCTGC 1198945 29 100.0 36 ............................. TAGTTAACATTATGACTTAAGCTAACCATTAAAATA 1199010 29 100.0 36 ............................. ACAACATAACAAGATGCTTATACCATGCAACACTAT 1199075 29 100.0 37 ............................. ATGTAATATTGTATTTTTTTTCAAAATAATTATAAAG 1199141 29 100.0 35 ............................. GGTTATAAAGAAGTGGAATGGCAAAGCAAAATTGA 1199205 29 100.0 36 ............................. ATTGTAATGTGCCTCTTAATAGGATATATAGCTTAT 1199270 29 100.0 36 ............................. TCTTATTAACCTTAGGTTTAGTAACATAATCTCCAA 1199335 29 100.0 36 ............................. AACAACACAACAAGATACTTACACCATGCGACACTC 1199400 29 100.0 37 ............................. ACCAAAAAGCTTAAAAAAAGAAATAAAGGTTTAAACA 1199466 29 100.0 36 ............................. TTAGAAATTCTTACCTCGTCAGTTGATTCTGTTAAT 1199531 29 100.0 36 ............................. TATACAAAGCGTTAAGGCTAATACAAAGGATACAGT 1199596 29 100.0 36 ............................. AATAGAAATAATAAACAAATAATTATTGTTGTCAAA 1199661 29 100.0 36 ............................. CCACCAATATCTACTATTAATGTTTTAGCCTTATTA 1199726 29 100.0 37 ............................. AGTTAGTGCTTTAACTCTTATTACAAAGCTACCTTCA 1199792 29 100.0 37 ............................. GTATGGAATGCCTGCAACATTTCATAAGCATCTTTAG 1199858 29 100.0 36 ............................. ATAAATGTTTTTGATGCATTTGTAGATTTGTGTTAT 1199923 29 100.0 36 ............................. TAATCAATAGGATTAGCAGAAATAGTAACTAATCTA 1199988 29 100.0 37 ............................. AATAATAGGGCAAAAGCAGTTATTCCAACTGGAGCGA 1200054 29 100.0 36 ............................. TTCTTAAAAATTCTCTTAAATTCATTTCTTAATCCT 1200119 29 100.0 37 ............................. TTCTAATATATCTTTATTTACTCTTATAAGCTTATTG 1200185 29 100.0 36 ............................. CCTAAAGCTATTATTTTGATTAATTCTTTAATTTAT 1200250 29 100.0 36 ............................. TATGCAAAGCGTTAAGGCTAATACAAAGCCAGTAGC 1200315 29 100.0 36 ............................. CCGTTTATTATAATGGACCAAGCCCTCATTAATTGA 1200380 29 100.0 37 ............................. GTTGAGAAAGTGCAAGGTGTCAATAGAAAAGTTAAAG 1200446 29 100.0 37 ............................. CCAGTTCCGTTAATAAAATCAAAATCTAACATTAAGC 1200512 29 100.0 37 ............................. ACTTTTTAAAACTTATCAAAAAGATATTATATATTAG 1200578 29 100.0 35 ............................. CCAATAAAGCCGACAAGGGGGGAAGGCATAAAAGC 1200642 29 100.0 37 ............................. TTTCCAAGTGCATTGGTTATATTTGGAGATATAAATA 1200708 29 100.0 37 ............................. TTCTTTATTTGGTAAAATATCACACCATCTAGTGGAA 1200774 29 100.0 36 ............................. CAACTTGGGGATTGGACATATGAGTTAAATAGTAGA 1200839 29 100.0 36 ............................. CCAATATCCAATTAAATTACTTATTTTATAATCTAT 1200904 29 100.0 36 ............................. TACGAAATACTCATTATTTACTTTTAATATCATTAT 1200969 29 100.0 37 ............................. TAATTATTTAAGCTAATATTTTATAATCTAAATTTTT 1201035 29 100.0 37 ............................. TCACATGTGTTCAATATGTAATATCCTAAACATCCTG 1201101 29 100.0 36 ............................. ATACAACAAAGGAGATTATAAAAAATGAATAAATTA 1201166 29 100.0 37 ............................. CTAATATATAAAATGACAAATATCTATTTAATTCTAA 1201232 29 100.0 37 ............................. ATACTTGATAAGTGATGTCTATAATTATTTTAATAAA 1201298 29 100.0 36 ............................. TTTCTTTAACTCTTGTTTTATTTCTTCCCTTATCTT 1201363 29 100.0 37 ............................. CCTAATGTTATTACACTTAATATCTATATAAACGCCT 1201429 29 100.0 36 ............................. ATAGCTTAATTTAAAAGGTTCTAGGAAGTTAATCCT 1201494 29 100.0 36 ............................. CCTACAAAACTAAAAGAACATTGATACTTTTTCATC 1201559 29 100.0 37 ............................. TTTTTATTATCAAAATTGTCTAAAAACATTCGTTTAT 1201625 29 100.0 36 ............................. CATCTGTAAGAAAACCAGCTATTGAAAGTGTATCAG 1201690 29 100.0 36 ............................. GAATTAGAAGACTGGACATATGAGTTAAATAGTAGA 1201755 29 100.0 36 ............................. ATTACAATATTAGGAATAGAGATATTGCATACGAGA 1201820 29 100.0 37 ............................. TCTTAATAAAAGTGTTATAATTGTTATCTTGTATGGC 1201886 29 100.0 36 ............................. ATGATTTTAAAGCCCCAATTTTGTTCAATTCCTAGT 1201951 29 100.0 37 ............................. TTTATTATAAATTTTATTTATCTCTTTCTTATGTCTT 1202017 29 100.0 37 ............................. ATAAAGGAGATTGATAGTTATGAGTAAAACATTAGTA 1202083 29 100.0 36 ............................. ATGATTTTAAAGCCCCAATTTTGTTCAATTCCTAGT 1202148 29 100.0 37 ............................. TTTAATAGCTCCTTTCCGTACAAAATAAAAAAGCACC 1202214 29 100.0 37 ............................. TTATATGTATTTTTATCTCTTTCATTATCTTAATTAT 1202280 29 100.0 36 ............................. ATATTTTACTCTTAGCTGTGCTATCATATCAGCTAA 1202345 29 100.0 37 ............................. TTGTGGGGTCTTGTTGGTTTAGTTATTGCTCTTATTC 1202411 29 100.0 36 ............................. TAAATTTTTTAGAAGAAGGACAACAAGTAAGGATTA 1202476 29 100.0 37 ............................. TAACAATTCATTTGATTTACTTTTAGTCTTATTAATA 1202542 29 100.0 36 ............................. TTTGCTAAGTCAAACATAGGTTTTTCTATTTCCATT 1202607 29 100.0 35 ............................. AATAAATATAAAAAAGTTTTAGAATTATTAGAACA 1202671 29 100.0 36 ............................. CAGGTAGAGTTGTAACTGAAAATGGTGGATATGGAG 1202736 29 100.0 36 ............................. GTTGCTTTAGCACTTTCTTTATATTTATTATTTGCT 1202801 29 100.0 37 ............................. ATTTTATCTAGTTGTTGAATTTGAACTTGATAATTTT 1202867 29 100.0 37 ............................. CTATAGTAATCTAAAAATTGTAATGGAAGCTTATATT 1202933 29 100.0 36 ............................. ATATTTAAAGATGCTAAAATACAGATTAATGGCAAG 1202998 29 100.0 37 ............................. TTAGGAAGACAGAAATTACAAAGCGATAAATTAGCAG 1203064 29 100.0 38 ............................. GAACAATCTGTACCAGCATCAGAACCTAATGGTGGGTA 1203131 29 100.0 36 ............................. TAATGAATAGCTTTATTACCAGTTGCTACTTGTTGC 1203196 29 100.0 37 ............................. TTGCTATGACAATGCAGTATATTATTTTCTTTATACA 1203262 29 100.0 36 ............................. TATACCATAAATAGCCATAGCTACTGAAACTATAGC 1203327 29 100.0 36 ............................. ATGACAGCCGTATTTTCACCAGCCACGGTAGAGTCA 1203392 29 100.0 37 ............................. TAGTTTTGGAAAAGTGAATAAAATATTACGTAAGCAA 1203458 29 100.0 37 ............................. TCTAAAGTATTTATTCTACTTTCTGTATTAGAAACTC 1203524 29 100.0 36 ............................. ATTAACTTCATTTACAAAGTTGTCTATTTTGTCCTT 1203589 29 100.0 37 ............................. CCACATCACTCATTTGGTAAAGTTAATAAGATATTAA 1203655 29 100.0 37 ............................. TTATAATAAATATCTTAGCAAGTAATTTTAAAAAATC 1203721 29 100.0 37 ............................. GATGTTGAAGGGTTTAAAACATGGTTAAAAGCTAATC 1203787 29 100.0 38 ............................. AATTAGTTTCAATATTTAAGAAATCATCTACTTTTTTT 1203854 29 100.0 36 ............................. ATATAAAAAAGAGTAGGGAATTACCCTACTCTGTTA 1203919 29 100.0 36 ............................. TAGCATAACGTAAAGCGTCCATAAGGTGGTTGTAAT 1203984 29 100.0 36 ............................. GGACATTACAACAAAGGTATTGAAGTATGGGACTAT 1204049 29 100.0 36 ............................. TTAAACAGTTTACCAATAGGGGTTTTAGATATTTTA 1204114 29 100.0 36 ............................. TAAGAAATAGAATATTAGTTGCGGATTATTTAAAAG 1204179 29 100.0 36 ............................. GTTGTTGGAGCTGGAAGAATATATACTCTATTGGAT 1204244 29 100.0 35 ............................. TGTTTGGTAAACTTAAAATAGAAGATATTATAAAT 1204308 29 100.0 36 ............................. TTAAAAGCAGAATAAGAAGGAACTAAACTAACTAGA 1204373 29 100.0 37 ............................. GAAGAAGCAAAATATGTAAGATTAACTAATCCTACGG 1204439 29 100.0 37 ............................. TGAAAAGTTAAACTATATTTTTTACCTTTCTCTAAAA 1204505 29 100.0 36 ............................. GATTCAATTTGATTAGCTTGTATGTGTTGAGATTCT 1204570 29 100.0 36 ............................. TTAAGGATAAAAAAGTCACCAACTAAAAGAGAATCT 1204635 29 100.0 37 ............................. ATATACAACAAATTCAATTAGACAACAATGAAGAAAC 1204701 29 100.0 36 ............................. CATAAACTCAGACATAGTGCAGCTACAATGTACTTG 1204766 29 100.0 36 ............................. ACTACTAGAGGATTTAAAAATATAAAATAAAAAATA 1204831 29 100.0 38 ............................. AATGAAGACAATTATTTTTTAAGAGGAATATCTTCCGC 1204898 29 100.0 36 ............................. GGTTTTAATTCAGCTTCACTAACTTCTATACCTTCT 1204963 29 96.6 37 .......C..................... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 1205029 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ========================================= ================== 108 29 99.8 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGAACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGCTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATAGATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1525989-1526282 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXA01000002.1 Clostridium perfringens strain NCTC10578, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1525989 30 100.0 36 .............................. TCTATTCTTGCCATTTTATATCACTTCCTTATATAT 1526055 30 100.0 35 .............................. TGTAATAATAAAGATATTCTAATTATATTTTTTTC 1526120 30 100.0 35 .............................. AAGAAACAGAAAATGAAACAAATATACACTCAGAA 1526185 30 100.0 36 .............................. GAAATAGTATGTTTAATATCTCAAGAAAGATTAAAC 1526251 30 86.7 0 ..........................GGGA | TT [1526272] ========== ====== ====== ====== ============================== ==================================== ================== 5 30 97.3 36 GTTGAACTTTAACAAAGGTTGTATTTAAAG # Left flank : TTTAGTGAATATCAAAGTGAAAGTTTATTAAAAAATTGGAGTTATTATGATTTACAAAATAAAATTAAGTATAAAGCCGAAGAAAAAGGTATAAATACTATATTTATAAATCCTCAATATACTTCAAAAAGATGTTCTAAGTGTGGCAATATACATGAAGACAATAGAGATTGTAAAAATAATCAAGCAGAGTTTAAGTGTGTAATATGTAAATATAGTGAAAATGCAGATATTAATGCCAGTAAAAACATAGCTATTCCATACATAGATAAAATTATAAGTGAATATATAAAAGACATAAAATAAAGGTTGTTTTACCAACCTAAAGGTGAGAAAGTAATATTAAAAATGGCTTAGTTTCTAAGTTTAAAGTAGATTTGATACTCTCACTAAACGCTCCAATAATATATTGGTAAAAAGCTAGTGCAAAATAGTCTAAAGCTAGGCGTGTACTAGGGTACAACTTTTATTAAGTTAAATAAAGTGGCTTAAATACAAGT # Right flank : ATATAACTTTGTAAAATTTATTTAAATAAGGAGAATTAAAATGAGAGACCCTAATAGAATTAAAAAAATATTGAATGAAATAGAAGAGATATGGGAAGAGAATAGTGATTGGAGATTTGGACAATTACTTTGTAATATACAATATTTTAAGGGGAAAGACATTTTTTATATAGAAGATGAAGTACTAGAAGAGAAATTAAAAGAAGGAAAAGATAGATTTATAAAAAATAATTTCCAAGCCAAATTTTAATTTGGCGGAAATTATAACGTAGTCTATCTTGTATATAGTCTATCTTATACGTAGGAATCTGTCTGGAATTTCAAGACAGATTCCTATACCCCTAGGAATTTGTCCGTAAAATCCAGACAAATTCCTACATGGGGATTTTGATAAAAAAACAATAAAAAATGTTAGTCGTTTTTAGGAAAAATGTGTGTCGTTAAAAGCCTTTTAAAAGAGTATTTAAATAAATTTATTATATAATTAAAAACTAAAATAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACTTTAACAAAGGTTGTATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 1693314-1695455 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXA01000002.1 Clostridium perfringens strain NCTC10578, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1693314 36 86.1 30 A...C.TA..A......................... GCATGAATTATTCCTGATAGTTCTTCGCTT A,A [1693316,1693326] 1693382 36 100.0 29 .................................... AATACCTTTTATACCTCATAAGGACGAGT 1693447 36 100.0 30 .................................... ACATCTTATGGAAAATATTTGTTTATAGAA 1693513 36 100.0 30 .................................... TCGAACGCTTTAGATTTAATCTTAGATGCA 1693579 36 100.0 29 .................................... TTAAAATGAAAGGGAGATTGAGATGGAAA 1693644 36 100.0 30 .................................... GAGTTAACGGATGCATTACTAATCCCAGGA 1693710 36 100.0 30 .................................... GAAGTAGAAATAGTAGAAACTGGAGAACTA 1693776 36 100.0 30 .................................... GTATTAGAGCAAGGAATAAATCAAAAGCTG 1693842 36 100.0 29 .................................... CATCTTTAAATGATTGTGTTTTTATAACA 1693907 36 100.0 30 .................................... TTAGAGAAATCAGAACTACCTTTGGAAACT 1693973 36 100.0 30 .................................... AAAGAGTTGATTTCAAGCTTAAGAAGAGAG 1694039 36 100.0 29 .................................... ACAACTGATATGGTTGTGAAGGGTATAAC 1694104 36 100.0 30 .................................... CAGATATTGAAAGGAGATATCTTTATAACG 1694170 36 100.0 30 .................................... GGAACAGGTAAAACAACATATGCGAAGCAA 1694236 36 100.0 30 .................................... GAGAGAAAAGAAGAAATTTTAAATTTAATA 1694302 36 100.0 30 .................................... ATTCTTATAGCGAAGCTAGAGAAAAAGAAG 1694368 36 100.0 30 .................................... AAAGGTTTAAAAGATGAATAATGAACAATG 1694434 36 100.0 30 .................................... TTAGCGTGTTGCTTAGTGGGGGTATGCTTT 1694500 36 100.0 29 .................................... TTAAAGTTAATCTTATACCTTTAAAGAAC 1694565 36 100.0 30 .................................... ATAGCAGGAAAGCAAAAAGGCGCTGATGAA 1694631 36 100.0 29 .................................... TAAACTTGATGCTATCCATATAGGCGCTA 1694696 36 100.0 30 .................................... AATATCTATGACCTTTATTGCACTCCAATT 1694762 36 100.0 30 .................................... AATATCTATGACCTTTATTGCACTCCAATT 1694828 36 100.0 30 .................................... TTATTATCTAAAGAGGATATTATCGCGCTA 1694894 36 100.0 30 .................................... GATTTTATAAATTGCATAGCTTATTCTAAG 1694960 36 100.0 30 .................................... AAAACAAACAAAGATATATATATTAAGTTA 1695026 36 100.0 30 .................................... TAAATGCAAAGAAATAATGAGTTATATAGC 1695092 36 100.0 30 .................................... TTTTCTGTTGCTACTTCTCTAAGTGTCTTT 1695158 36 100.0 30 .................................... GCAGGACAAGTAACAGAGGTAGAAGCTTAT 1695224 36 100.0 29 .................................... TCTTATAGATACATTAGTATTACCTAATA 1695289 36 100.0 30 .................................... CTTAGTAAGGCGTGGGTTGAACATACTGGC 1695355 36 100.0 29 .................................... AATTTAATGGAGGATGGTCAGAAGACTAT 1695420 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGCCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //