Array 1 108043-106379 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNF01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N18393 SEEH8393_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108042 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107981 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107920 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107859 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107792 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107731 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107670 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107609 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107548 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107487 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107426 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107365 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107304 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107243 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107182 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107121 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107060 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106999 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106938 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106835 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106774 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106713 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106652 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106591 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106530 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106469 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106408 29 96.6 0 A............................ | A [106381] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 313937-314878 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNF01000082.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N18393 SEEH8393_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 313937 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 313998 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 314059 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 314120 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 314181 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 314242 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 314303 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 314364 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 314425 28 96.6 31 ........-.................... AACAGGAACAGGAAAAAAAGATTTGTCCGGT 314484 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 314545 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 314606 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 314667 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 314728 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 314789 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 314850 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : CAGGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //