Array 1 3356062-3355658 **** Predicted by CRISPRDetect 2.4 *** >NC_019695.1 Chroococcidiopsis thermalis PCC 7203, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3356061 37 100.0 36 ..................................... TTGCGATTTCCTACTACTCGATTAATGGCTCGAATA 3355988 37 100.0 34 ..................................... CGGGTTGCAGATTAGAGAAGAGACTGAGCTGATT 3355917 37 100.0 35 ..................................... ACGATTAATTGCAGATACCAAGATAGCTAGATCGC 3355845 37 89.2 36 .........T....GC.T................... CACAATGAAACCAAAAGAACAGGCTACACCGTGCAT 3355772 37 75.7 42 .........T..CG.T.T..........A.....CTT TTTTTTCGGAAGTGTTGGAATAAGATCGCCTGCTGCGCTATG 3355693 36 81.1 0 .........T.G..GT.T...-.............C. | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 91.0 37 GTTGAAATTCAATTAACGCCCTATTAGGGATTGAAAC # Left flank : AAAGGACAGCACCACAGCGCCGTGCTAGTTTCCCTAGAAGACTGGACTGCCATTCAAGAAACGCTATACCTGATGTCAATTCCAGGGATGAAAGAATCAATCCTGGAAGCCCGTAAAGAGCCAATCGAAGAGAGTGCAACCAAGCTGGAGTGGTAAGCGAGTAGTGAGCAGCGGGTGGCAACTGATTTACTCCAAACAAGCTCAAAAGGACGCTCAAAAACTAGCGTCTGCTGGACTGAAGCCAAAAGCAGAGCAATTGCTAGCAGTGTTTGCAGAGAATCCTTACCAAAACCCCCCACCCTACGAGAAATTGGGGGGGGATTTAGCAGGTTACTATTCCCGACGAATTAATATCCAGCATCGCCTAGTCTATGAAGTGCTAGAGAAACAACGAATCGTGAGAGTTGTGAGAATGTGGACGCATTATGAGTGAGACAGCATGATAACTAGACCAGAAAGTGCAAAACCCCTGGAGCCAATACAGCCGTGCAATCAACTGC # Right flank : TAGTACAGACTGAACCAATGCACTACCGACGATTTGGCAAAACAAATCTCAATCTTTCGGTGTTTTCGTTAGGCACGATGCGTTACTTGGCTTCGGAGGAAAATGCCTATAAAACAATCGATCGCGCAGTTGCACTAGGAATCAATCACATCGAAACAGCTAGAGGCTATGGTGACAGCGAATTATATCTCGGTGCAGCACTCAAAAAAGGTTTGCCTGTCCCCCGTTCCCAACTTTACATCACAACCAAAATTCCCCCTACGACAGATGCAGACTCAATGCATTGTTATATTGATGAATCTTTAGAACGTATTGGACTCGATTACTTAGATTGCTTGGCAATTCACGGAATAAACACTTGGGAACATCTCGATCTCGTACAACAACCAAATGGTTGTATGCAAGCAGTACGGGAAGCTGTTGCTGATGGACGGGTAAGACACGTTGGTTTTTCCACTCACGCATCTTTAGATGTAATACTAGCAGCGATCGCGACCGAT # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCAATTAACGCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 3360949-3356802 **** Predicted by CRISPRDetect 2.4 *** >NC_019695.1 Chroococcidiopsis thermalis PCC 7203, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 3360948 37 100.0 35 ..................................... TGCTGAGGCAACAGCACCTATACTACTCTTCTCCC 3360876 37 100.0 33 ..................................... ATAGCGGAAGCGTGGATCTGCCTCTAATTCTCC 3360806 37 100.0 35 ..................................... AGGAAACTGCTATCGAGCTGTACGAACGGCTGCTC 3360734 37 100.0 40 ..................................... CCTCTGAAGTGCGACAAACCACCCAAGAAAACCAAAGGAA 3360657 37 100.0 36 ..................................... TATACCTATGTGGGCGAGTTTGAGTTCGATCCGAAT 3360584 37 100.0 38 ..................................... TGATTAACGTAGTTGCAACCATCCGCAAACGCCTTCAA 3360509 37 100.0 36 ..................................... TCCAGTACCTAACTGCGATAATTTGACCGGCAACAG 3360436 37 100.0 45 ..................................... TTTTATTAGTGTGTGGTGCTGTAAATCTATAAAGGCGTGGAAGAA 3360354 37 100.0 35 ..................................... ATTATTCAACACACTCTGTAATTGCTAGTTCTGCG 3360282 37 100.0 34 ..................................... AAACCAGGCGAATTAGGGCTAAGACTTGCTGATG 3360211 37 100.0 42 ..................................... TAGTACTGATACTTTAACCCGAGAATATGACAGCTTTTACCA 3360132 37 100.0 33 ..................................... AACAAAAAGATTGCGAATAAGATAATTCGCGAA 3360062 37 100.0 34 ..................................... ATTGGTAGGGAGTAGGGGGAGCGATCGCGTTTTA 3359991 37 100.0 36 ..................................... GCTTTCAGACATTATCGGAGAGCCAGGAAACATGAC 3359918 37 100.0 34 ..................................... AGCTACGGGCAGCGAAAGACGGACTACTAATCGC 3359847 37 100.0 34 ..................................... TAGGAATTCTCCTAAAACTCCAGATAAGCTAGAA 3359776 37 100.0 40 ..................................... TGAAACCCAAAAGAATCTCGCACACCTTGAGGAATTTCAG 3359699 37 100.0 34 ..................................... AAATTCCCACATGGCTAAAACGAGCGAAGGACAG 3359628 37 100.0 36 ..................................... TTGTTTTGGGTGCTGGAACTGGCGGCTACATTGGTA 3359555 37 100.0 39 ..................................... ATATCCGTGATGCTGCTAATGCTCTTTCTGGTGAGCTGC 3359479 37 100.0 35 ..................................... GGCTGATATCTGCTAAAGCTCGAACCAGTTTCTTT 3359407 37 100.0 36 ..................................... AGATTTAATAATATGTATGCAACGTCTTACAAAACA 3359334 37 100.0 36 ..................................... GAATAGAGGCATAAACTGAAGTAGGAAGAATGCAAA 3359261 37 100.0 35 ..................................... AGCATTTGAAAGCGGTGGTGGAGATGGAAGGCGAT 3359189 37 100.0 37 ..................................... TCGCTAGCTGCATGCATATAACGTACCTACGAGGGGA 3359115 37 100.0 45 ..................................... TTGGCGCGATTGACTTCATCGATCGCTCGGTTGGGACTCGGTTGG 3359033 37 100.0 37 ..................................... GAAATATCTGTCTAAGAAAGCTGCAATTCCTACTAGA 3358959 37 100.0 38 ..................................... CTTGATGCTGCTGGTAATGTAGTGGCTAATTCTACAGC 3358884 37 100.0 34 ..................................... AAGCGAAAACCCGTTCAGCAAGGCTATTTAGCCG 3358813 37 100.0 47 ..................................... GCATTGTAAGAAACTCCTTAGATTTTTTTGAGTAGAAAAGCAATGAG 3358729 37 100.0 34 ..................................... GCTTATACACTCCCGCGATTGACTCCCCCAGGGC 3358658 37 100.0 35 ..................................... AAACAGTGAACGGGCGAGACGAAAATGCTGCTAAA 3358586 37 100.0 36 ..................................... GGGGGAAAAAATATGATCGCAGCGGTCGCGGCGCGA 3358513 37 100.0 38 ..................................... TCAACGTAGACAATAACTAGAGAGATAAATAATGGCTG 3358438 37 100.0 33 ..................................... GTTCCCGCCCAAGTTTCAGCACCAAGGATTGAG 3358368 37 100.0 31 ..................................... CTAAGGACAATACAGCCACTGCTACCGGGAA 3358300 37 100.0 36 ..................................... AAGGAAATCGCATCATTAAAGGAAATTATTATTAGA 3358227 37 100.0 40 ..................................... GGTGTGAGTGGAGTTGGAGATAGGGGATTAGCTACTAGGG 3358150 37 100.0 37 ..................................... TATTTGATTCATTTTTGCAATGTACCCTGCGGTGAAA 3358076 37 100.0 36 ..................................... CAGATTACGACGGCTGGGAGTGCTGGGTGGTTGACC 3358003 37 100.0 35 ..................................... TGTTTTTATTGCGGTTATTGTGAATTAGGGCGAGA 3357931 37 100.0 40 ..................................... AGTTTAGAGCATTAGGTACTAGCAGACAAGAATCGTTTTT 3357854 37 100.0 31 ..................................... AAGGAAGGTGCTGCTGTTAGCGTCCTGGTGC 3357786 37 100.0 34 ..................................... TAGGACTTTTTAAAGAAGCCCCCTATACTTGCCT 3357715 37 100.0 36 ..................................... GTATTCAGCAGTGGGTTCAAGAATTAGAGCCGAGAA 3357642 37 100.0 36 ..................................... ATCGAAAACGTCCCAGGTTTGCTCACCTGTCCCAAT 3357569 37 100.0 37 ..................................... AGTCGTTCCCGCTATCGCGAGATTGCGGCTAATTCTG 3357495 37 100.0 36 ..................................... ATGTGAATTTTGAGCGATCGCGTTGTGTAAATCCAG 3357422 37 100.0 35 ..................................... GTAGTTCTTGGTGCGATGGGTGTACGAATGGCTAT 3357350 37 100.0 37 ..................................... AAAAGCAGCTAGTTTTTAATTTTGAGATTAACCTTAA 3357276 37 100.0 35 ..................................... GCGCTTGATAAAGCGGTTAATGCGGATTTCTAAGG 3357204 37 100.0 34 ..................................... ATGACATGATCGAGTCTATGCTTGAATTCGTTGT 3357133 37 100.0 35 ..................................... AAGAACATAGATAGCAAACCAATGGGAAGTTGAAT 3357061 37 100.0 36 ..................................... GAAATGCGCCAATTGCAAAGAGAGAGAGATAAAGCG 3356988 37 100.0 41 ..................................... TTAACTGATGGAAGCGACAACGAGAAAAGTCAAGGTAAAAG 3356910 37 100.0 35 ..................................... TTTGCTAATAGTAGATCTTGGATGTCTACGTCGCC 3356838 37 94.6 0 .................A..................T | ========== ====== ====== ====== ===================================== =============================================== ================== 57 37 99.9 36 GTTGAAATTTAATTAACGCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTATTTCTTACGATATCTCCGAAGATAAGCGCCGTACCAAAATCCATAACGTTCTTAAGTCTTACGGGCAATGGGTGCAGTACAGCGTGTTTGAATGCCAGTTGAGCGATACTCAATATGCTAAATTACGTTGGCGTTTAAATAAGTTAATTAAGCCGGATACTGATAGTATTCGATTTTATTTTCTATGCGCCTGCTGTTTTGGTAAAGTTGAGCGTATTGGTGGTGAACCAGTTTATGATGACACTATTTTCTTTGCTGAATGCGCGGATGGGTAGGTGTTGGTACAGAGAGTTTGAAAAAAATGCTGGCGATCGGCGCGATACAGTAGTTTACAGGAATAATAGCTGATGACCCACCGCGCTCCTTGCTACGTCTAGGTTTTCACAATTTGTACCTTGCATGAACCAGCTTTTGTGATGCTATTATTGCTTTATCCGCGCTCTCGAACCTTGAAAACTAAATATGGCTTAGTTTTCAGGCTCCCGCC # Right flank : AAGTGATGAGTCAGTGATGAGGCATCAAAGCCTTACAGTAGAGAAATACTGAGTTTGACGAGGCATCAGCTCCTATACTACTTTCCCAACAGGAAAAACAGCTCGCTCGACATCCGAATAGAATGAATGTACAACGTTATCCCGACGTGTAACATGAACATCTTTTCAGCCACAGAAGCGCGAGACAACCTTTACAAGCTAATTGACCAAACAGCAGAATCTCACCAGCCAGTCACAATCAAAGGACAGCACCACAGCGCCGTGCTAGTTTCCCTAGAAGACTGGACTGCCATTCAAGAAACGCTATACCTGATGTCAATTCCAGGGATGAAAGAATCAATCCTGGAAGCCCGTAAAGAGCCAATCGAAGAGAGTGCAACCAAGCTGGAGTGGTAAGCGAGTAGTGAGCAGCGGGTGGCAACTGATTTACTCCAAACAAGCTCAAAAGGACGCTCAAAAACTAGCGTCTGCTGGACTGAAGCCAAAAGCAGAGCAATTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTAATTAACGCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //