Array 1 425943-426976 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIMJJ010000011.1 Neisseria subflava strain MA3-1 MA3-1_contig1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
    425943	    33	 100.0	    33	.................................	GGTTTTGGCATTACCCAAAAATTACCGTTCAAA  	
    426009	    33	  97.0	    34	G................................	TAAATCCAAAAGTTCTTTATCGTTTTTCTTTAAA 	
    426076	    33	  97.0	    35	C................................	AACAGGCTTTAGATCTGCCTCAACTGTACCCGTAA	
    426144	    33	  97.0	    35	C................................	AGCAGTTTTTGGACATGCTGTCTGTCGGCGTGACT	
    426212	    33	  97.0	    32	G................................	GGTATTGATCCGGTTGAATCGGGTAACTGTTT   	
    426277	    33	  97.0	    34	C................................	TTCGAGTGCAGCTAAGGCTTACGGCTGCCGTGTT 	
    426344	    33	 100.0	    35	.................................	AAATCATCGCGCGGCCGCTATGGATAAAACAGCCT	
    426412	    33	 100.0	    34	.................................	AATGCATCATTACCGACCTAATCATTGACTTTTA 	
    426479	    33	  97.0	    33	G................................	GATAGGATTCATGATTACGCCTCGCTTGCCCCA  	
    426545	    33	 100.0	    34	.................................	CGAAGCCTTTTGTTATCTCGCCGCGTAAATTCTT 	
    426612	    33	  97.0	    33	A................................	CATTAAAAAAGGCCGTCTGATTTCAGACGACCT  	
    426678	    33	  97.0	    34	G................................	GCTTCAGTTGACTGCTTCGATAGCTGGTCTTCAA 	
    426745	    33	  97.0	    33	G................................	AACAACAGTTTATGTTGAGTTTCCCTTTGCTCG  	
    426811	    33	 100.0	    32	.................................	AAAATACCTCATACAAATAACGATACAACATT   	
    426876	    33	  97.0	    35	.............A...................	TCCAGTAACTACGAACCCTATGCCGACCCTATCCC	
    426944	    33	  78.8	     0	GT...T.......A....A.........C...T	|                                  	
==========	======	======	======	=================================	===================================	==================
        16	    33	  96.8	    34	TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC	                                   	       

# Left flank :   TGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGTGTGCAGTATTCGGTGTTCGAATGCGACATTGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTCTTGAAAATCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTCAAGGATACATTGATTGTGTGAATCGCCAACCTGCGGTTCACATGAAAATGCGGCAGGGTTGGCGAATGGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTTGCGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTAAGAGAGGC
# Right flank :  TATCGTCCAAGCAGGCCACTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTGGTAAAAGCAGTAGAGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATATTAAATTCGATAGCATATTATCATTGCATTTTTATCAATTTGAATTTTTTAGAATTTCAATATGAGCCCCCTCATTTACTACGCCCATTCCGCCCAAGACAAACTCGGCAATCTCTTGCCTTACAAACATTGGCAAACCTTGCAAAGCCATTCGGTAAATGTTGGGGTAATGGCGGCGGAGTTTGCTTGGGTATTTGGTGCGCAGGAATAGGCCTGCCAGATGGGAAAGCTGCATGACTTAGGGAAATATTCGGAACCATTTGACCGCCGATTGCATGGCGGTCCTTCAGTTGATCATACTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTATAGTGGAGGTCAGA

# Questionable array : NO	 Score: 5.57
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.80,-5.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//