Array 1 30657-28906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZEF01000019.1 Streptococcus suis isolate 9401240, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 30656 36 100.0 30 .................................... CTTAAGAGTTAAAGGACTAGCAGCATAAGA 30590 36 100.0 30 .................................... TGATAAGGTTGTTCTTGTACGATATCCTCA 30524 36 100.0 30 .................................... TAAGGGTATGATAGGTATGGGTACCGCCGC 30458 36 100.0 30 .................................... TGTGCTGAGCACAGATGTATTGCAGGGCTA 30392 36 100.0 30 .................................... AAAACCTGGCAAGACAAAGTCGCTAAATAC 30326 36 100.0 30 .................................... CTTTCACACCGTAGTGTTCAAGGATTTCCG 30260 36 100.0 30 .................................... TGAATCAAGAGAATATTTTGAAAGCGTAGA 30194 36 100.0 31 .................................... TATTGTGGATTATGGCATACCCGTTTGCGGT 30127 36 100.0 29 .................................... CGGAAAAATAGGCGAAAATAGGCGAAAAT 30062 36 100.0 30 .................................... TAATAAAATCGCCCCTCTGCAAGTAATGAT 29996 36 100.0 30 .................................... TTTATCTTTTTCCCATTGTTTAACGTCCAA 29930 36 100.0 30 .................................... AGGTGATCCAGATTATCTTGAAGGTATTAC 29864 36 100.0 30 .................................... CTTTACAACCCTAACCCAAAGTATAAGCCG 29798 36 100.0 30 .................................... GTAAATATAACTATTTACACAGTCCGATGG 29732 36 100.0 30 .................................... AGATGACAAGACCAAGAAGCAAAAGGCACA 29666 36 100.0 30 .................................... ACGTATGCGCGTGTTCAGACTAATGTTCAA 29600 36 100.0 30 .................................... CAACCCTAAAATCAAAACTGGGGGTAACAT 29534 36 100.0 30 .................................... TTGTTTGGGATAACGATACACGGTTTTAAA 29468 36 100.0 30 .................................... TGAATTGGCAGTTGCTGAAATCAATGATAA 29402 36 100.0 30 .................................... GTCACCATTTTCACGAATATGTCCGATATC 29336 36 100.0 30 .................................... AATCTATACCGCTATTTGCAAATCCGGATA 29270 36 100.0 30 .................................... AGCATTTTAAAGATACAGTCGTTCCGCAGA 29204 36 97.2 30 .........................A.......... TTTATTTGTAGAACAAATAGCATCTCATAG 29138 36 97.2 30 .........................A.......... TTTATTTGTAGAACAAATAGCATCTCATAG 29072 36 97.2 30 .........................A.......... TTTATTTGTAGAACAAATAGCATCTCATAG 29006 36 97.2 29 .........................A.......... TTACTAGTCTTAGATACTTCGTCTCATAT 28941 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTAAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGAGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAAATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : GTATAGCTATTCAGATTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCACCCTTGTCCCATCTCCCCCTCCATGCTATACTATACATAATCGTTTTACTTAAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCACACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAGGTGGTAGCAGTCAATAGTAAGGACTGTATCTGGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //