Array 1 23710-27197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSNN010000035.1 Pseudoflavonifractor capillosus strain An841 An841_NODE_35_length_29716_cov_69.7955, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 23710 33 100.0 34 ................................. AACTATGCAGAGGACGCCGGAGTCAATCCGTGCG 23777 33 100.0 35 ................................. ATTTCCGGTGGCGCCTTGGCCCGTGGTGGTCGGCG 23845 33 100.0 37 ................................. ATCATGGACGATTTTAGGAGAGCACAGTTGGAATGGC 23915 33 100.0 35 ................................. AGCAGCGAGGACACCGTGGCAGTAGTAGCCCACAG 23983 33 100.0 35 ................................. TGTCCATCGTTGACAGCAGATTGACAGAACCGGGG 24051 33 100.0 35 ................................. AGAGCAGGGAGGCGAGCAGCATGGAGATATTGACC 24119 33 100.0 33 ................................. CACCGCTGGAAAGCAGCGGTGGCCCACTGCGTG 24185 33 100.0 33 ................................. TGTCCATCGTTGACAGCAGATTGACAGAACCGG 24251 33 100.0 36 ................................. TTTTTGAAACATCAGTATGGTGTAACTGTACAACGT 24320 33 100.0 35 ................................. CGGGCATATGATTTCACCTTGTCCAACATCCTCCA 24388 33 100.0 34 ................................. ACAGTGGCCAGGTACTCCCCAGCCTGGGTGGCGG 24455 33 100.0 35 ................................. ATTGAAAGCGGATATGACTTGCGTGTGCTGAAGGA 24523 33 100.0 34 ................................. CGCCGACAACATCCAGGCACTGATCAATGCGGCT 24590 33 100.0 37 ................................. TGTACCCACTCACGCCCAGGTCATCCAGCATGGACAG 24660 33 100.0 34 ................................. TTACTGAGTCGCCAAACAATAATCCAGCATACTA 24727 33 100.0 33 ................................. AACTCCAGAGTGTTGTTGCGGGTGCGGGCCATC 24793 33 100.0 36 ................................. AAATTCAGTTTTTGAAACTGTGTTATATAGACGATG 24862 33 100.0 35 ................................. TTATAAATAGCTTTGAAATAGGGTTGAATAAGGTC 24930 33 100.0 34 ................................. TTTCTTAATGTAATGCGTGTCAGTTGTAGGAATG 24997 33 100.0 36 ................................. ATCTGCACATCTTTTTCCATCAAGAACAATAGGGTT 25066 33 100.0 34 ................................. CCTCTACTCCCCCGCTGGAGAGCAGCGAGGGCCC 25133 33 100.0 34 ................................. AATGGTGGATAGACTGTGTGAAAGTACAGATACA 25200 33 100.0 33 ................................. GGCATATTCGGTCCGATTGATGACGGCACGCAT 25266 33 100.0 34 ................................. CGCCGTCGTAGGTCTTGGCTCCCTGCTTAACCCG 25333 33 100.0 34 ................................. GATATGGATTTTTGAGATATGCCCGCAGCGTTTG 25400 33 100.0 34 ................................. TCCGCCTGGATCACCGGCACCGAGCGGTGCCACT 25467 33 100.0 35 ................................. CACTCCCAGGGAGTCGGCACACATAAAGGAGATGC 25535 33 100.0 37 ................................. AGTGCGCTGATCTGTCTGCGGTTGTAGTCAAGCCGGA 25605 33 100.0 33 ................................. CCGATTGATGTTTTCCCGGAGCCGGACGGCCCG 25671 33 100.0 33 ................................. CCAGACGCCGCCGCCTGGGTGTATGCAGGGTCG 25737 33 100.0 36 ................................. CACGGCGGCCCTCAAGGCGTGTAAAACGGAGCAGGA 25806 33 100.0 34 ................................. ATTTATTCAATTCTCCTCTCTGAATTGCTTTAAG 25873 33 100.0 35 ................................. TGTGCCCATAGCCTTAACCTTAGCAATAGCCATAC 25941 33 100.0 34 ................................. CTGGGCCGGGTCCCCCTTCCGCCACCCTGTCGGG 26008 33 100.0 34 ................................. TTTGCAGCGGCTGGGCAAGACCTGACCGTTGATC 26075 33 100.0 34 ................................. TCCTTCGGCGAAACGTGAGGGACACGCTTCGCCT 26142 33 100.0 34 ................................. CTCAGTGAGGGGATAATATGCACCATCTTGTAGC 26209 33 100.0 39 ................................. TTAGGAATAGTTTTACCAATAGCTTTGGAAATGTGCCGG 26281 33 100.0 34 ................................. TTCTGCGGTTTTTCCTAGTTCCAGACATTTTTGG 26348 33 100.0 36 ................................. CTACGGAGGTTATAAACATGACTGAAAAATGTTTTG 26417 33 100.0 34 ................................. CATAAGGTCGTTAAAATCCATATCTTGCTTAATA 26484 33 100.0 35 ................................. CTTTTCAGAAGCCATTTTTTTCACTTGAAATTTAT 26552 33 100.0 36 ................................. AAGGATTTTTTTAGATTTATTCAATTGTTCACGCAT 26621 33 100.0 37 ................................. CTGTCTTTTGGTATGACTCCGGAAGAGCAGGAAGAAG 26691 33 100.0 36 ................................. CGCCGCCGTCAGATTGAAGGTGTAGGGCGTGCCGGA 26760 33 100.0 34 ................................. TATGTCAATCTTATAATCCGCCACGAAAATCCCC 26827 33 100.0 35 ................................. TGTCCATTGGTGTCCACTTGTGTCCACTCTTGGCC 26895 33 100.0 34 ................................. TCCCGTGGACAAGGTTCAGGTCAAGCAGTCTGAA 26962 33 100.0 35 ................................. CATAAGCACGCCTTTGCCCTGGTCACCCGCCCCCT 27030 33 100.0 35 ................................. TCGTCCAGGATCAGCGTGGCAAAGGCGGGCTCCAG 27098 33 100.0 34 ................................. TTCCGCTGTGAGATCCTCTCGGTATGCTACACTA 27165 33 90.9 0 ..........T..............G......C | ========== ====== ====== ====== ================================= ======================================= ================== 52 33 99.8 35 GTCGCACCCCACACGGGGTGCGTGGATTGAAAT # Left flank : GTACCCACCGTTTCTCTGGAGGTAGAAACATGCTGGTTCTGATTACGTATGACGTGAATACCCAGGATGCCGCTGGGCGCAAGCGGCTGCGGCAAATCGCCAAACAATGTGTCAACTACGGACAACGTGTCCAATGTTCTGTGTTCGAGTGCCTGCTGGACGCTGCGCAATGTCGCATGCTTCAGGCCAAGCTGTGCAGCATTATGGATGCCGAGAAAGACAGCCTGCGTTTTTACTACCTGGGCAATAAATATGAGAGTAAAATCGAACACTTCGGCGCCAAACAAACCTATGAACCCGAGGGTGCGCTTATCTTATAGGTTTGCCAGGTGCGAAGGGGAAGCTCTCATAACATCCCTGGGAGGTTCGCACACACATTTTTCCAGTTTATGTGAGGAGTAGAGATTTTCTCACCTCCGCAATTGTAGCACTTAGAATTTATACTGTGTAATCTGTGCAAGGAACACAACGATTCACCTCGTACCTTGTATAGATTTGCT # Right flank : CATCGTTACCTATGGGCGGATGATTGAACTATATCTGCTCTTTCCATTCTCTGAACTCGTCTCTTCTTTTCCCCGTATAAAATATCCATCGAACCTCATCGAACAATAAAAAATATCCACCCTCCCTGTGCTGCATGAAAGCCACCTGCTTGGAGATACTTACATACAGTATCTTCCAAACGAGGTGGCTTTTTGTGCAAGGTAAGGTGGACTTATGCGGCGTGAACACGTCGAAACTCAAGGTTCTGAAAAGTGAAGAGAGCATCGCCCTGCTCCGCCGGGCCCGACAGGGAGACCAGGCAGCCCGGGAGGAACTGATTGCCGGGAATCTGCGCCTGGTGCTGTCGGTAATTCAAAAGTTTGCAGGTCGGGGTGAACACATGGACGATCTGTTCCAGGTGGGGTGCATCGGCCTCATCAAAGCCATTGACAACTTCAATGTGGACTTGGACGTGAAGTTTTCCACCTATGGGGTGCCCATGATCATTGGGGAAATCCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 71559-70797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSNN010000002.1 Pseudoflavonifractor capillosus strain An841 An841_NODE_2_length_124445_cov_76.9172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 71558 36 100.0 30 .................................... AGAAGGAGCAGTACCGGAATTACCACCAGC 71492 36 100.0 30 .................................... ATGGATGGGTACTGGATGATACGGACGTGG 71426 36 100.0 30 .................................... CAAAGCCCGCCAATGGCTCCAACGGCTGGC 71360 36 100.0 30 .................................... AAACCGGTTTTCATGGCCGCAGCCGTCGGA 71294 36 100.0 30 .................................... TACCCCCAGATGTCCATGAGCATCTGATCG 71228 36 100.0 30 .................................... CTCCTGGCCGTAGATGGTCAGCTCTCGGGA 71162 36 100.0 30 .................................... GGGTGGACACCACGGCCACGAGCGGGAAGG 71096 36 100.0 30 .................................... TTGTCATTATGGATATATAGCCACTTGCCC 71030 36 100.0 29 .................................... TCATGGAGCGTGACAGGGTTTGACAGGCA 70965 36 100.0 30 .................................... CTAATGCAATATTGCGTGCTGTCCCAGTTT 70899 36 100.0 30 .................................... TGGAAGCTCCAGGAGCTCCGCTGGATCATA 70833 36 83.3 0 ..................C.......CA..GG...A | G [70800] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTGAGAGTCGTGTTGTTTTAGATGGTAGTCAAAC # Left flank : TCTCTGATGTGGGAGGAACTGGAGGTGGAAAGTACACATCTCCAGCAGAGCATTCAGGGCTATCTGGCCCGTTTGGCGTCCCAAATTCCGGTTCCCGTGGAGTATGGAGAGGGGGATGCCGTGTGGCCCCTGCTCAAAGGGTTGAAATTTCAGCCGGTGCTGGATGGTGTGTCTCCGCTGGAGCGCTTGACCCAATACCTGGAGCTGTACCATCAACTGATGCCCCGGCCCTGTGTTCTGTTGGTGGGGATGCACCTGTACTTTTCCCGGCAGGAGCTGGAGCAGCTTTACCAGATGGCCCTTTATGAGAAGTGGAATGTCCTGGTGTTGGAACCACACCAGTGCCCTCCACAGCCCCAGGAGCAGTGGTGCATCATAGATCACGATGGCTGCGAATTAAGGGTTGATTCCCCGGGAGAAATCCCGTAAAATAGAATTGGTCAAGAGAAAACCACCTAAAACAACACAGCGCAATGTCGTGGCGTACACTCTCATTTGAG # Right flank : AACCTGCGTGCAGCGGAAACGCTGCACGCAGGTTTTCACTTTATTGGAACGTAGGACTCAACTCCACCTTGCCCTCCACACACTTGACGTCCAGGGCCACAATGGGCTGGTCGTAGTGGTCGATGAGCAGGGTGGCGATGGCGTCCTCCAAATCCTTCTGAATCTGGCGGCGCAGGTTGCGGGCGCCGTAGACGGGGGAGAAGGAGGTGTCCACCAGGTAGTCCAGCACGCTCTGGTCATAGGTGAAGGTGATGCCCTTGTTGCGCAGCACCTGGCTGAGCTCGCCCAGCATGATCTTGGCGATCTCCTGGAAGTTCTCCTGAGAGAGCTGGTTGAAGCAGATGATCTCGTCCACCCGGTTGATGAACTCAGGGCGCAGGAAGGACTCCAGGCCCTTCATAGCCTTATCCTTGGCCAGCTGGGTGGGGGAGCGGTCAAAGCCCAGAGAGCCGCCCTTGACGTTGCTGCCGGCGTTGGAGGTCATGACGATGACGGTGTTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCGTGTTGTTTTAGATGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //