Array 1 44880-46433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFM010000015.1 Salmonella enterica subsp. enterica serovar Anatum strain F20 NODE_4_length_225043_cov_29.597446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44880 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 44941 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 45002 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 45063 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 45124 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 45185 29 100.0 33 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGGAT 45247 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 45308 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 45369 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 45430 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 45491 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 45552 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 45613 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 45674 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 45735 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 45796 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 45857 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 45918 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 45979 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 46040 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 46101 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 46162 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 46223 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 46284 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 46345 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 46406 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62748-63204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFFM010000015.1 Salmonella enterica subsp. enterica serovar Anatum strain F20 NODE_4_length_225043_cov_29.597446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62748 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 62809 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 62870 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 62931 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 62992 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 63053 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 63114 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 63175 29 93.1 0 ............TC............... | A [63202] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //