Array 1 72041-74569 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGHR01000009.1 Lactobacillus delbrueckii subsp. sunkii strain JCM 17838 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72041 28 100.0 33 ............................ TAATAAGATCTTTATTAAAGAACACCAAAAATA 72102 28 100.0 33 ............................ CAACGGTGGTAGCGGTAGGCCTAACTCGCAAGG 72163 28 100.0 33 ............................ TGTCAATCTGCAGCGTGTCAACGCCAGACTGAT 72224 28 100.0 33 ............................ TTAGCCAGCAGGAAGTAGTAGGAGTAGTCACGC 72285 28 100.0 33 ............................ TGGGTCAAGTACTTCGTTCCTGATCGTCAAACG 72346 28 100.0 33 ............................ CATGTATACCTACAAAAATCACGAGGGCGAGCA 72407 28 100.0 33 ............................ TGTCCTCACGCATTTTCTTCAATGCTTCTTTGT 72468 28 100.0 33 ............................ TGACGCGGCCAAGGATGCTGACACCTACCAACA 72529 28 100.0 33 ............................ TGGCAGAGTTGGCCGATACTCCACCAGCAAAGC 72590 28 100.0 33 ............................ TAAACTTCCAGTCATCGTCTTCTAAGCTGAGTG 72651 28 100.0 33 ............................ TGCCGATCAAGCTGCCTTTGTGAGCGTACGTTG 72712 28 100.0 33 ............................ TCGCCGACTATAGCGGTAAAACACTGTCCGAGC 72773 28 100.0 33 ............................ TAATACTTACACGGTAACACTCTCAGACGGGAG 72834 28 100.0 33 ............................ CAGGCCGAAAGCTGAAACGTGGGGATGCTGGGT 72895 28 100.0 33 ............................ CATCCCCGCTGGGATTGCTCATGATCCAGACCT 72956 28 100.0 33 ............................ TATAATTTGTGTGTATCCATTTACACTAGAGGT 73017 28 100.0 33 ............................ CGTGCATCTGTATGGCCCTCATATCTTTCATAC 73078 28 100.0 33 ............................ CCTTATCAAGGGCTGGAGACAGTCAGACAATCG 73139 28 100.0 33 ............................ TCCAGGTCGTCATGTCTGCTTTTCTTCGTTAAT 73200 28 100.0 33 ............................ TATCCCCGGATCTTTTTGGCCGCCAAGGTGTCT 73261 28 100.0 33 ............................ TCAGCTAGTCGACACATCCGGGACCATGTTCTG 73322 28 100.0 33 ............................ TGGTTAAAGACAGGATCCAGTTATGGCGGACAG 73383 28 100.0 33 ............................ CGCTCCCCAGTTTGGGACGCATTGTATGCGGGA 73444 28 100.0 33 ............................ TCGCCTTAGAATATGTGCTGAAAAAAGAAGAAG 73505 28 100.0 33 ............................ CCCGAAGGCGTCAAAGCAGGTGGCAAGCTCCAG 73566 28 100.0 33 ............................ TATAAATTGGAGAGACATACTGACCAAATCCCT 73627 28 100.0 33 ............................ CATGTCCTCGTGCTTTTCTTCTTTACCGTCGCA 73688 28 100.0 33 ............................ TTTGGTGATCGACACCTTCTGCACGATCGTGGG 73749 28 100.0 33 ............................ CGTAACCCAGCAAATCGCTGAGTTTGAAACGCA 73810 28 100.0 33 ............................ TTTTCAGCAGTGAGATTTTTAATCGACTGCATC 73871 28 100.0 33 ............................ TAGTACTAAAGGAGTGAGGACTATGTCAATTGG 73932 28 100.0 32 ............................ CAGATCGTCAAAAAGTTCGGAACCTGCCTCTG T [73959] 73993 28 100.0 33 ............................ TGGAGCTGATGATGGACGACGACAAACGAGTGG 74054 28 100.0 33 ............................ TTCCGAACCGTTAGCTGGAAAATTCAAGTCGAT 74115 28 100.0 33 ............................ TGTCTGAAAGCAAACCGGCATCAGTAGTCTTTA 74176 28 100.0 33 ............................ CACGGCACGGCCAGAATCAAGGCTACCAAGGCC 74237 28 100.0 33 ............................ CGTCAAACACGTAACCGTAGAATATCTTTTTTT 74298 28 100.0 33 ............................ CACTGGCGAAACTGGTCGCCATCAAGGCAATCC 74359 28 100.0 32 ............................ CATCGCTTTCCTAGACAAGCCGCACTGCACCA T [74386] 74420 28 100.0 33 ............................ CTTCAATGTCACCAATGGGCGGACTATGGTCCA 74481 28 100.0 33 ............................ TGCTGTCAAGACTTGACAAGGCCTGTAGCTCGG 74542 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 100.0 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATGTTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGAGGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAACAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAGAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : CTGAAGGAACAGAAGGGAGCAAATGGTTATGAACGATAAGATTTTTTTCGAGAAGGAAAATCCAAGCGATAAGATTTGGCATGTAGAGCATGCGGCCGTCCCAGAAGGTGGCGGCCCAGCGGTCCGTGATGTTGGCAGACTAGAAATTTCCTTTGATAAAAAGAAGATTTATAATCTCTGGACCGACTATCCAGACAAATTCACACCAGAGGAAATTGAAACCTTTAAGAAAGAAGAACCATATTGGGCAAACTTTTTCAAAGGCCGCGAAAAGCACTAGTATAGCTAGTGTTTTTTGTTTAATTGGAGGAAGCATGAAAGAAAGAATTGAATATTGGCCGCTTACCAAAATTAAGCCGTATCCTAAAAATCCGCGTATCAACGGCGATGCGGTGGTATTGGTGGCAAACAGTATTAAAGAATTTGGCTTCCGAAGTCCTATCGTCGCAGACAAGGCAGGGGTAATTGTTGCCGGACACACACGATTAAATGCCGCCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84462-85026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGHR01000009.1 Lactobacillus delbrueckii subsp. sunkii strain JCM 17838 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 84462 36 100.0 30 .................................... CTTTTCTGGGTCGGCCTTGCGAAGCTTTTC 84528 36 100.0 30 .................................... AACATAAACATCTTTACCAGCAATTTCTTT 84594 36 100.0 30 .................................... CTGGGAGTCAGCTTTCCCACCTTCAAAAAG 84660 36 100.0 30 .................................... TCAGCGCTGAATCTAACGCTCATGTCCTGC 84726 36 100.0 30 .................................... AGTCATTGACAACAAATCAGAGGACTGGCT 84792 36 100.0 30 .................................... TTCCTTGATTAACGTTATGAAGCGGTCACG 84858 36 100.0 30 .................................... GTACCACAGCAATTCTCTTGAAGGCTGTTG 84924 36 100.0 30 .................................... TGACATAGAGAGCGACTTTCAAACGAAGTT 84990 36 75.0 0 .......C...............G..A...GTGGTT | A [85013] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.2 30 GTTTTAGACCTAATGTATCTGGTTAAGATTTAAAGC # Left flank : TATCAATATATGATGAAGGCTATAACCAACTTGATTCAGAAAAATACATCATGTATTTTGGTAACCCTCTTACTCAGATTAATCCTTTTGGATCGTTTGAAACTGACTTAAGAACATATATTGCCAAAAATTTGTGTCCTTATCAAATAGATGAGATAGAACAGAAGTGGGCAGAATTACAGGAGTCTCTCCAAAAGGTATTGTTTACGTTTAATTTTCCAACAACGATTAGACAAGAATTTGGTGTAAAAAATATTTTGAGAGATTTCCAAGTAGGTATTGATGGATACAAATGTGATTCAGCGTATGATAAAATAAGTTTGATGATACGATTAGGCCGAATGCTTCACCCAGAAAAGATCATGGTGTTTTGTGATTTAACTTCATATTTGAAAGCTTCAGAGCTTGAGCAGCTTGAAGAATTCTGTCGTAACGTGACAGCAAAGGTCATCTTAATCAATTGATATACTATTGGTTCTACTAGATTATTAAAAAAGTCA # Right flank : TTTAAATTACGTATTGTTTGGCCCTCAACAGGGCCTTTTTTCTGTTGAACACAACAACTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCGCGGAGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAAATGTTAATC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGACCTAATGTATCTGGTTAAGATTTAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //