Array 1 30512-31201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000051.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 30512 30 100.0 36 .............................. GCGCGACCGTGGCGCCGACGAACGGGCCGACCGTGG 30578 30 100.0 34 .............................. AACCACATGCTGGCGTTCACGTTCACGGCCGCAG 30642 30 100.0 38 .............................. CCGTGCAGGACGCGGACACCTCCGCACCCGAAGACGTG 30710 30 100.0 34 .............................. GCGAGGAGGAGCGCCTGCGCGCCATCGGGCTCGG 30774 30 100.0 37 .............................. CCGTTCAACCGCCGCAGGGTGGGGGCGCAAGCGCCAC 30841 30 100.0 34 .............................. GCGGGTGCCACACCGGTGCCGCGATAACCAGCGG 30905 30 100.0 36 .............................. CTGGAGGACACGGCGGCAGCTCCGGCCGCAGCGACG 30971 30 100.0 40 .............................. AGGTCGACGACGCCATGGCCGGGCTGCGCGCCGATGTCCA 31041 30 100.0 35 .............................. GACGCCGGCCGGACGGCCAGGCGGATCCCTCTAGG 31106 30 100.0 36 .............................. TACAGCTCGGACCGGACGACCCGCTCACTACGCCGC 31172 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 100.0 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTGTGCAATATCCAGCTTGTAGTGCCACGGCAT # Right flank : GCTGGCAGGCCAGCGGCGACCAGCGCCGCCCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 2455-2210 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000149.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2454 36 100.0 33 .................................... CGGGGAGCGTGCCGCACGCCGCGCGGCCTCCAG 2385 36 100.0 37 .................................... ACTGTTCGGTTCGCGGCAGCCCCTTGAGGTACGACGT 2312 36 100.0 31 .................................... CTTCTCGATCTCGCCGGCGTTGTTGATGCGC 2245 36 97.2 0 .........C.......................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 99.3 34 GTCGCAAGATAGGAACTTTCCGAGTCGGATTGAAAC # Left flank : AACCTCCGACACGCCGACAGAACAAGGAGGTTGTGGGAAAGATCCATAACCCCGTGAGCTGCGAAAACATAAACGATCAAGGATTTTGGGCCAGTTGTCCACAGCCCCCTCCGGGAGGTTGTGGGACGATCTTGCAAACCCGCAGGTCAGGACCCCCAGGATCAGTGGTAC # Right flank : GTCCCTTCCGCTGCTGGCGGTTTGAGAAGGGGAATTCGTCGCGGTCGAATTGCGTCGCCGATTTCCTGGTCAGCCGATCGGTCGTTGGACGAGGATCGATTCCCCGTTTCCACAGGGATGCGACCATCAGGGACACGAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGCCGAAATGGAAGGGCTTTGCTGTCCGGTGCGCAGGACGACATC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAGATAGGAACTTTCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1450-2075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000052.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1450 30 100.0 37 .............................. CCTTCAGGCGACTCTGAGAAGCCGCCGGCTTTAGCCG 1517 30 100.0 36 .............................. ACCGGGTCCGCGGCACGGCGCACACCGCTGCACCCT 1583 30 100.0 37 .............................. GGCGGCCATGAGACGTCCGCCGCCGACGTCCACCATG 1650 30 100.0 36 .............................. TGCGGATCAGCCAGGACCGCGCCGGGCGCGTGGTGG 1716 30 100.0 35 .............................. CGCACGCGCGGGGCAAGGGTCACAGCTGGGCGGAG 1781 30 100.0 36 .............................. CTCGCCACGGTGTGATCTGGTACGCGAACATCCACC 1847 30 100.0 37 .............................. CAGTTGTAGTTATCGAACCAGTTTCCGTCAGGCACTG 1914 30 100.0 35 .............................. TCCTCGGCGTCTGCGCTCCATCCCTGGTCGCCCAT 1979 30 100.0 37 .............................. TGTAAGCGCTCGCGCCGGTAGCGCCCGCCGAGCTCTT 2046 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAAACGCCGGCTGGTCATCGTCGTCCCGGGGCAGTCCG # Right flank : CGTGTGCTTCGCGCGGGTGCGCCATCTCGCCGAGCTGCGTCCGTGATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGAGCAGCCGGTGATCAGGTCCGTCGTCGTCCACGTCCGTGATCATCCCTGGAGGGATTGAAACAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 2541-3232 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000052.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2541 30 100.0 40 .............................. AGCGGCATTGCCTCCCTTGAGGCGTTCGGCACCGCCGTGC 2611 30 100.0 36 .............................. GGGGTGCTGGTCAGGATGTCCCACACCTGTGACCAC 2677 30 100.0 37 .............................. GCCGCAGCCTCCCGCCATGCCCCCGGATCGCAGTCGG 2744 30 100.0 36 .............................. TCTTACGAAGCTTGATCGCAGCATCTAGATCATCAA 2810 30 100.0 36 .............................. TAGGTGATGATCAGGTGGTGATAGCTGCTGTCCGCG 2876 30 100.0 35 .............................. GCCGGCAGGCCGGCAGCGACCAGCGCCGCCCCGCC 2941 30 100.0 36 .............................. GTCTCTAGAGCAACGATGCGCTCACGAAGCCTAAGG 3007 30 100.0 35 .............................. CACGACTGCCACCTGGTGAACGCCGGCGTGGGACG 3072 30 100.0 36 .............................. TCTGGCGCTTGGTCGATCACATCAACGGGGCAAGCA 3138 30 100.0 35 .............................. ACGGGTTCGAGGGCTGCCGGATGGTGATCCCGCTG 3203 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 100.0 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : CTCTTGTCCGTGATCATCCCTGGAGGGATTGAAACGTGTGCTTCGCGCGGGTGCGCCATCTCGCCGAGCTGCGTCCGTGATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGAGCAGCCGGTGATCAGGTCCGTCGTCGTCCAC # Right flank : ATCCCGTACGTGGCGCGCGAAGCGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 2-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000053.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2 30 100.0 40 .............................. CCGGACAGGGTGAACCCGTAGTAGAGCTCCACGGTGCCCG 72 30 100.0 37 .............................. AGGATGCCATCACGCGGATCGCCGCGATGGCGCGCGC 139 30 100.0 38 .............................. GAAATTACCGGGGGTGAGCCATTGGGCCGCGTTCCGAG 207 30 100.0 38 .............................. CCAGTGCTGTCACATACGGCCGGCAGGTCGCGGCGACC 275 30 96.7 35 .............T................ CGGCGGGTCGTGTCTGCTTGCAGCGCGCGGCTTCG 340 30 100.0 38 .............................. CGTAGCCGCAGGAAGGTCTCCCCGTTGTAGACCAGGTT 408 30 100.0 37 .............................. AAGACGCTCAGGACACGGCGATTGATGTCCATGGCCT 475 30 100.0 40 .............................. ATCTCCTCTCGTGCCCGCACGGCGGGCCTACTGGTATCTG 545 30 100.0 34 .............................. CGGCGGCAACCGCAGTTGTCGGCGTCCTCGGCTC 609 30 100.0 36 .............................. GTAGCAGCCGGGCGGCCTCCGCCGGTCCCTGCGTTC 675 30 100.0 36 .............................. GTCCTCCGGGCGGTGAAATACCCCAGGTAGATCGTC 741 30 96.7 34 ..................G........... TCGTATATTTTGCATGTTCTAAACGCAGATACGC 805 30 100.0 37 .............................. ACCCCGACTGGAGTGTCCAGTGGAGCCTCACCCACGG 872 30 100.0 37 .............................. CCACGCAGGACCGCCACGTCGGTATGGAGAGCTTCCT 939 30 96.7 36 .............T................ TCGACAGCCTCGGCCAGGCGCTCTCTTCCGGACGGC 1005 30 100.0 36 .............................. GTGACCGGCTCGACGGCGGGCTTCTCGATCGCGGTT 1071 30 100.0 35 .............................. ATGACGCGCTGGCCGGCGTGCGCGAGCACGCGCTG 1136 30 100.0 37 .............................. TCAGCCGCTGGGGAATGGCCGGCGCGGAGAGCGCTGA 1203 30 100.0 35 .............................. CGACACCACCGGAACATTTTTGCGAGGGCAGTGAG 1268 30 90.0 0 ..........G.AT................ | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 99.0 37 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : GG # Right flank : CACCACCGGTGATCGCGAGATTGAAAAACTGGGGGTCGAGGTCCTGTCCGCATACGGGTCGTACCTATGACGCGCAGACGAAGTGCGTCGCTTGCCAGAACGCGGGGATTCGCTCCTGCTGGGTCTTCGATCCGAAGATCCTGTCGGTGACCGTCCGTCTGCTCGGCGGCCACGGAGCTTATGACGTCGTCGCCACCGTCCGTGGTGGCGACCGCTGTGAACTCGCGGAACCGTTCTCTGCCGCGTTCCGCCTTGCCGGCCTACTGGCCTGAGTCCCTATTTGAGACCACGCCTTGGCCGATGGACGGCCGTTCCAGGTTCGATAATGATTTTGATCATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 55885-55381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000058.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 55884 29 96.6 37 ............T................ AGCGCATCTATCGGCCGCTCACCGACCACCCCGAGTG 55818 29 100.0 38 ............................. GCGCGGTAGGCGTCGGTGCGGCCTTCGGTGCCGACACG 55751 29 100.0 39 ............................. GTGAGCAGGCATTCGGAGTAGCCGAGCGCCCTGCTCGGG 55683 29 96.6 39 ........A.................... TCCTGCCCGGCAGCGGCAAGAGCACGTGGGCACGGGCGG 55615 29 100.0 41 ............................. TAGATCACCAGGCCGCCGTTGGGAGTCAGCGTCCAGCGGTA 55545 29 100.0 38 ............................. ACGATGACGACGAACGCAGGAACAGACGAGTCGACCGG 55478 29 96.6 40 ...............A............. TTGGCGAAGGACCGCCGTTTGCTGGTGGTCCAGCTGCTGC 55409 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 8 29 98.7 39 TCCTCATCGCCCCTACGAGGGATTGAAAC # Left flank : GCTGCCCCATGCCGAGGTCCTCATCGCCCCTACGAGGGATTGAAACTATATTAAAGAATAACGTCCAAGCGATTTGCAGACACGTCCTCATCGCCCCTACGAGGGATTGAAACGCTGTCGCCCTGTTCGGTCGCATGATCCAGCCGGAGGTCCTCATCGCCCCTACGAGGGATTGAAACGAGCCCAATTAGGGATTGGTGTCCCCGTCAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAAACGCAAGTCCGCGTTAGCGCACCGGCTGATCACCGGGG # Right flank : CACCTTGGTGTCGATGCTGGCGGCCTGCGCCTGCAGCGCTGCCTCCATCGTTTTTCCTTTCTTTCTTGGTCTTGTCGATGGGTGTGTGAGTGGCGCGTCGGCGCTTGAAGGAAGCCCGGCCGGAAATCGGGTCAGGGGGCGGCCGGTGTGTCGACCATCTCCGGGGGCTCGAATACGCGGACGGGTGGGGCGTCCGTACCGAGCGGTTCCACCTCGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCATCGCCCCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : NA // Array 2 58731-57257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000058.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 58730 30 100.0 36 .............................. GATTGCACCCTGCACCCGGACTCCGCCACGGGATAC 58664 30 100.0 34 .............................. ACCAGCGGTATCGGCTTGCCGAGGTTGTCTCGGC 58600 30 100.0 34 .............................. ACGGACTCAACAAGGCGCTCACCGGCAGCTCCAC 58536 30 100.0 36 .............................. GTGTCGGGTCGCCTCCGGTCGGAGTGGGCGTGGGTG 58470 30 100.0 35 .............................. ACGTGTAGGCATTACGCGCCTCACCCAAGGGGGGC 58405 30 100.0 37 .............................. GACCCGGGGCTGGCCATGCTGCTGCTCGGCGTGGCCA 58338 30 100.0 36 .............................. CCGCGCACGAGCAGGCCGGAGGAGCCGAGCTGTGAA 58272 30 100.0 35 .............................. CGGGCCGTCTTGTACGCCTCGACGCTGGCGCGGGT 58207 30 100.0 36 .............................. ACCTGCTGCGGAGTCGGAGCGTCCACCAGGGTGGCG 58141 30 100.0 36 .............................. CGACCAGCGTTGCCGTTGCCATGGACGCCGCCGGCC 58075 30 100.0 36 .............................. CGGCTGGCACCCGACCGGCGAACCGGCTGGCCCGGC 58009 30 100.0 36 .............................. CGGGCGACGCGAATCTACCCGCCAACTGCGGCGTGG 57943 30 100.0 34 .............................. GTGGCTACGAGCGACGGATCTCTGGGAGCGTGCC 57879 30 100.0 34 .............................. TCGCTCCCCATGAGCGCGTCCACATAGCGCTCCA 57815 30 100.0 36 .............................. TGGATGTCCGGGCGCAGGCCGAAGCTGCGGACGCAG 57749 30 100.0 34 .............................. AGGTCGTTCATGCGGTCGCGCTCGCCCGTCTGAC 57685 30 100.0 36 .............................. CCTCCCGCTGGTAGGGCCGCAGCGGCAGTGCCCCGC 57619 30 100.0 37 .............................. GCGACCGACTCGCGCGTACCGGCCTCCAGCTCGGCGA 57552 30 100.0 35 .............................. GTGGTGTCGAGGTGCCCGCCGGGGACCATGCGCTC 57487 30 100.0 35 .............................. CGGCGTAAATCCGTGCCAGGTCCCGGAACACGACG 57422 30 100.0 40 .............................. CGCACTGCGTCCCGCGACACGACCAGGCACAGCCGGCCCT 57352 30 100.0 36 .............................. GTGAGCGGCCCGAACCGGCCGAGAAGGAACGGCGTG 57286 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 100.0 36 GTCCTCATCGCCCCTACGAGGGATTGAAAC # Left flank : TGAAGCACCGCACGCTCGGCCGTCCGGTCGCCTACGACGAGCTGCTCTACCTCGAGGCGCTGAAACTCACCCGCACCTGTCTCGAGGGCGAGCGCTACCAGCCGTTCCGGATCTGGTGGTGACCCATGTATGTGATCGTCGTCTACGACACCGCAGCGGAACGCAACAGCAAAGTCCTCAAGACCTGCCGCCAGTACCTCCACCACGTGCAACGGAGCGTGTTCGAAGGTAACCTCAGCCCCGCGCAGCTCCTCCGCTTCCGGCGGCGTATCGAAGCCGTGATCGACCACTCGTACGATCACGTCCTCGTCTACACCCTCCCGCCCGGTGCGGACGTCGTCCGGGAGAGCCTGGGCGCCGGATGGGCGGCCCCAACTGACATACTTTGATCATGTGTTTGCAGCGGACCCCCGCGTGGTGATGTTCGACCGGAGGTTCGCTGCAATCCGACCCCTCACCGGGGCCTCGACACGCCGTCCGACCTGGGCGTTTATACTCGG # Right flank : GACTTGCGGCTCTGGCGGTCGTAGGTCCCGATCTCGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 9535-12003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000094.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9535 29 100.0 32 ............................. ATACGGCCGAGCGTCGGGGCGATCTTGTCAAA 9596 29 100.0 32 ............................. CAACTCGTGGTAGAGCGGCAGCTTGAGATCGG 9657 29 100.0 32 ............................. CACGGTGGCCGCGTTACTGCGGGCCGCGTGGG 9718 29 100.0 32 ............................. CTGGAGTACAGCAAGGGCGAGCTTCTCCAGAT 9779 29 100.0 32 ............................. CGTCCTCGCAGGCATTCCGCGACGCCTGCTGG 9840 29 100.0 32 ............................. CTCAGCGCCAGTGCGATCCCGGACGGGACCTC 9901 29 100.0 32 ............................. CCCGACCAGGCCCTTGACCAGGCCCGGCTCGA 9962 29 100.0 32 ............................. CAGCGCGAGGCGCTGCTTCAGGGCCTGATGGA 10023 29 100.0 32 ............................. ATCACCGATCTCGTCCACCACGCGATCCAAGA 10084 29 100.0 32 ............................. AAGATGCCGAGTCACGTTGCCTGCCGGACGGC 10145 29 100.0 32 ............................. CTGATCGGCGCCATCGACACCGCGACCGGCCT 10206 29 100.0 32 ............................. CGGGGCCGTGTGGCGTGCGGGGCTACCGGCGG 10267 29 100.0 32 ............................. TCGTCTCGGCCGATCCGGTCGCGGATGCGTGC 10328 29 100.0 32 ............................. GACAGGGGTATGTCCGGGACGGACGTACGTAC 10389 29 100.0 32 ............................. CGCCGGGGGGCGCGCCGATCGTCACCCAACAG 10450 29 100.0 32 ............................. ACCCGCTACGCGCTCGGGGGACGTCGGTCCCG 10511 29 100.0 32 ............................. ACATCAACATCGGCAAGAGCAAGGCTCCGCTG 10572 29 100.0 32 ............................. CTGTTCTTTGGTGTACCCGAGCGCGGCTACGA 10633 29 100.0 32 ............................. TCTTTGCGCCTGAGCAGCTCCAGATCGGAGCC 10694 29 100.0 32 ............................. AATGCAATTGCATGGATTGCGCAACTTGAGCC 10755 29 100.0 32 ............................. CAACAGACCGTTCCGTACTCGTCATTCGCGAG 10816 29 100.0 32 ............................. CGGTACCGGCCCCGGAGGAGGGCACGTTCCTG 10877 29 100.0 32 ............................. GCTCGTCCATCCGGCAGTCATGTCAGACCTAC 10938 29 100.0 32 ............................. TAATGCAGGTCGGGCGGGTCGCCTTGCACATA 10999 29 100.0 32 ............................. ATCAAATCCTGGCGCGACGTGTGGGGATCAAC 11060 29 100.0 32 ............................. GTGCACCGGGCGAAGGCGTGGCCCCGGCAGCG 11121 29 100.0 32 ............................. CCGGCCAGCGAGAAGCAGTTGGCAATGGCCGA 11182 29 100.0 32 ............................. GTCAGGTACAGCGTCGGGGCATGACCCGGCTG 11243 29 100.0 32 ............................. ATCGTGCGCGCCACGTTTGACGCCATCACCAC 11304 29 100.0 32 ............................. TACGAGCTGCTGTTCCGGTTCGCCCGCCGGAT 11365 29 100.0 32 ............................. CTGGTCAAGTCCGGCACCGTCCTCGGCAAGGT 11426 29 100.0 32 ............................. GCATGGCTGATCTGGGACGGCCGCCGCTGGCG 11487 29 100.0 32 ............................. CCGAGTGGGCCTGCTGGTGCGTCCGGCGGAGC 11548 29 100.0 32 ............................. CCAGGTGGCGTGGGTGTGGCGTAGATCGTGCA 11609 29 100.0 32 ............................. CCGGAGTCGACGGCGTCCCACAGTCCGACCTC 11670 29 100.0 32 ............................. CCGTCCAACCCGAACCTCACCGCGTACAGGTC 11731 29 100.0 32 ............................. TAACCTGGCCTGGCTCCCGGCCGGGGAACGCA 11792 29 100.0 32 ............................. CCGCAGCGGACGCCCGCGCCCTCGCGATAGAG 11853 29 96.6 32 ............................C CACCCCGAGTCTGAGGAGAACCATGCCCCCGC 11914 29 100.0 32 ............................. GCGTCGACCTCAGGACACTGATAGCTGCGAGC 11975 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.9 32 GCCGTCCCCACGCCCGTGGGGGTGATCCG # Left flank : CGCGTCGTCGACATCGTCCACCTGTGGGACCCCGAACTCGGTTCTCTCCCCGCCGGGGTCAACTATGCGGACGGTACGGACACCGCGGAGGGCTCCGACTACACGGACGGCATGGACGGCTCCGACCCGGTGCTCGATCTCGACCATGACGACATCCTTACCAACCTCGGTGAATCATGGCCTCAATGATTGTGATCTCCACGACAGCGGTGCCCGATCACGTACGGGGCGCTCTCAGCCGCTGGCTCGTTGAACCAGCACCGGGTCTGTATGTGGGCACGGTCTCTGCCCGCGTCCGTGACGAACTGTGGTCCGCTGTGAGCGCTGCCATTGCGGACGGCGCTGCCGTCTGCGTCCACCCAGCTGAGACAGAACAGGGATTCCAGATCAGGACCGCCGGTGAACGGCGGCGCCACGTCCTCGATTTCGATGGCCTTCAACTCGTCGGACTCCAATCACAACAACTGCCGGAGGCGCTATAAAGTTCCAGGTCAGCAAGT # Right flank : ATCCGGGACTGGGCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1404-3600 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000054.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1404 30 100.0 36 .............................. CCGTCCGGCAGTGGCGGCAGGAGCTCCATATCTCCT 1470 30 100.0 34 .............................. TTTCCCGGGGCCGCTCCCCGGGGTGTGACTTAAC 1534 30 100.0 36 .............................. GGCGGACCACCCCGATCTGGGTGCCGTCCAGCGCTA 1600 30 100.0 35 .............................. GGGAGCAGGACTGCGGGTTGCGCTTCTGCTCGCCC 1665 30 100.0 37 .............................. CCTTGACAGCATCCAGGAGTTTCCGACTGGTCTCCGG 1732 30 100.0 35 .............................. CGCCGTTGAGCGAGGAGGGCTGACCCGATGCCCTG 1797 30 100.0 36 .............................. CAGTCCCGATGAGCGGACAGCCGGGCCGCAGGGAGC 1863 30 100.0 34 .............................. GTGAGCTGCTTTTTCGTCCGCCAGCTCGCGCCGC 1927 30 100.0 36 .............................. GCCGCGTGCGCCCGCAGCGACGGCCAATCCCGCCCG 1993 30 100.0 35 .............................. AGGATCGTGGCGACCCGATTGAACAGGTCCTGCAT 2058 30 100.0 36 .............................. CCCGCTGCCTGCGTGCCGACCCGGCGGCGTTCCTGC 2124 30 100.0 35 .............................. CCGTGGAGGACAACCAGGGCGGGGACATGTGCGCG 2189 30 100.0 35 .............................. ACGGGTCGCATCAGGCGCATCGCCAAGCGGCTCCG 2254 30 100.0 33 .............................. GCGGACAGCTCGACCTTGTTGGATGCGCTTGTT 2317 30 100.0 34 .............................. CGTCGAACGCGGGCAGTGCCGTGTTGGCGTACTG 2381 30 100.0 37 .............................. GTCTACCGGAGGCCGCCCGTGCGGTCGGCACCTCCTA 2448 30 100.0 36 .............................. GTGCCGTCCCGCCAGCTCCAGGCCACGTTGACCGCA 2514 30 100.0 36 .............................. TCGGGCGTCAGCCCGGCCCACACGCCGTCCTCGGCG 2580 30 100.0 36 .............................. AGGTACCGGTTCCCGTCGAGATCCCAAACGTAGGCG 2646 30 100.0 34 .............................. AGGCGGACAAGAAAGCGATCTACGACGCGGCCAT 2710 30 100.0 36 .............................. TTCAGGTCTACGGCTGGGATCTCAAGCGCCTCGCGC 2776 30 100.0 36 .............................. AGATCAGTGACCCGAACGCGCCGATCGGCGTCCACC 2842 30 100.0 36 .............................. ACGACCCACTGAAGGCCGGCAAGGAAGCGTCCTCGC 2908 30 100.0 36 .............................. TTACCGGCCAGGACTGGGAATACAAGATGATCCAGG 2974 30 100.0 38 .............................. GCCCGGCCGACCAGCACCCGGCACGTGAAATCGACCTG 3042 30 100.0 37 .............................. GTGACGGCATACTGTCCCATCAGACGGGACAGGAGGC 3109 30 100.0 36 .............................. TTGTCCCAGAAATACTCCTCTCCTTCCTCCCTATCC 3175 30 100.0 37 .............................. CCGCCCGGCGTGGCCCGGACGTACCGGGCCTCCACCG 3242 30 100.0 36 .............................. GGAGACGGCCGAGATCTGCACTGGCGAGGACGGCGC 3308 30 100.0 38 .............................. GTGGTCGTCCACGAAGTCATGCTGCCTCCGTTGATGAG 3376 30 100.0 36 .............................. GCGCTGTGCTTGTAGATCTTTCCGGCGCCGTGGCAG 3442 30 100.0 35 .............................. AGTCGTACTGGCTGTTGCCGCGCCCTTGCGCCCAG 3507 30 100.0 34 .............................. CGGTCCACGTGCACTGGTAGTGACCCGTTACCGG 3571 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 34 30 100.0 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : TCATCCCTGGAGGGATTGAAACACGATTGCAGTGGACGCGTAGATCGACGTCGTGCCCGGTCCGTGATCATCCCTGGAGGGATTGAAACCTGGGGACGCGGTCCCCGGGCAGGAGCTCCGGTACGACGTCCGTGATCATCCCTGGAGGGATTGAAACCCGACCGTTTCAACGATCCGACTACCGGGGTCGCGTCCGTGATCATCCCTGGAGGGATTGAAACGCCGCGGCAGAATTGATAGTGCAGCCCGGGAATCCTGTCCGTGATCATCCCTGGAGGGATTGAAACATCTCCCACTCGTCGCCGGCCGCGCCCAGCAGGGCCGGTCCGTGATCATCCCTGGAGGGATTGAAACGCCACGCGGGCGGCGTACGCCGCCTCAACCGCCGAGGTCCGTGATCATCCCTGGAGGGATTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGGAGGGATTGAAACGCCACGCGGGCGGCGTACGCCGCCTCAACCGCCGAG # Right flank : CTGCTGATCAGAATGTGTGTGATGTAGACCACATGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCTGCGGCGTCAGGTCCGTGATCATCCCTGGGGGAATTGAAACTACTAGCAGATGACAGCAGATGCAATCCTATGTCAGGTCCGTGATCATCCCTGGAGGGATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 2 4008-6345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000054.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4008 30 93.3 36 ..................G..A........ TACTAGCAGATGACAGCAGATGCAATCCTATGTCAG 4074 30 100.0 35 .............................. TCCCACCCCTGTCCCGGTGGGCGCGATGGGACGTG 4139 30 100.0 36 .............................. TGGGTCGCGGATCGGTTGGGTCCAGACGCGGGACCT 4205 30 100.0 39 .............................. CAGAGTCTCCTGAACGGTGCCCGCCCATCCGTTTTGCCC 4274 30 100.0 34 .............................. CCGAGCGGCTCTGGCGGCGTGCCATCCCGCGCTG 4338 30 100.0 36 .............................. ATGTGCCTGGCGCGCCAGAACGCCTGATCGTTCATG 4404 30 100.0 32 .............................. GGGATCCGGACGTCCAGGACGCCCGAGCCTGC 4466 30 100.0 37 .............................. CCGCGGCGTTTTGGCACCTTGGGCGGCCTGATCCCGG 4533 30 100.0 37 .............................. CACGGGCCGAGGCTTGGATCAGGGAGGCCCTCGCCAG 4600 30 100.0 33 .............................. ATGACCTTGTTGAACAGGCCGTGACGTTCGTCC 4663 30 100.0 36 .............................. ACGTCGCTGGGTAGCGCCGAGAATACCGAGACAAAG 4729 30 100.0 35 .............................. ACGCGAAACCACTGGTTCAGCGGAATGCTGTTCGT 4794 30 100.0 37 .............................. AAGCGGTCCCCTGCCATCAGGCAGACCACTCCTTCAA 4861 30 100.0 39 .............................. ACGCACGACAACCTGGATGACATCCCCTCCGGCGCCCGG 4930 30 100.0 36 .............................. CGGGCGCTGGACCGGCTGCCGCCGGAGCCGGAGCCG 4996 30 100.0 37 .............................. GCGGCGGTTGGCCGGTCCATGGTCGGCCCCCTAGCCC 5063 30 100.0 37 .............................. GTCGTCCCGGTCTCCCCGCCGGCGGCCGGCGAGGCTG 5130 30 100.0 37 .............................. GAGTGCGCGTGCAGCCGGCCGTAGGAGTCGTCTTCTG 5197 30 100.0 35 .............................. GTGCCACAAGGGCCGGCACGGCCACGCCGCCACGG 5262 30 96.7 36 ...................A.......... TCGTTCTCATCAGGCTGCGGCATTTACCGGACCCAC 5328 30 100.0 34 .............................. GGGAACACGATGACGTCGTCGGGGCTGTTGACGA 5392 30 100.0 35 .............................. GCTGTGGTTCCAGGCCACCCGGCCGGCCGGGTCCT 5457 30 100.0 36 .............................. AAACACCGTTGCCGGTCTGCGCGCTGGACAGGTTCG 5523 30 96.7 39 .C............................ TGGTCCTGCACGAGACCGATCAGGGCCGCCGGTTGGCTG 5592 30 100.0 36 .............................. GCCGACCGTCCGGTGAGCCGCAGCCGTTCCGCCTCC 5658 30 100.0 38 .............................. CTTGTCCGATCGCTCGCGCTACCGCTGTGGCATCCCGT 5726 30 100.0 35 .............................. CCCTGTGGGCGGCTATGACCGCGCGGCAGGAGGCC 5791 30 100.0 33 .............................. GGTTGAGCCCGGCGTAGAGGTCGCCACCAGCGG 5854 30 100.0 35 .............................. CCACGGCCCTTGATGCCATGCCCAGCGTGGCCGTA 5919 30 100.0 36 .............................. CCGCGCTGGCCCGGGAGCACCGGGCCGCCCTTATCG 5985 30 100.0 38 .............................. ATCGCGAACGCCACCGGGTCCAGTGCCTGCGACTCGGC 6053 30 100.0 35 .............................. CCGAGCACCTCGCTGCCGACCCGCCGCCGTCGATG 6118 30 100.0 37 .............................. ATGTCGAGCGCGGTGCACACCGCCTCGTACTGCTCAC 6185 30 96.7 36 ..........C................... AAGACGTACCAGCCGCGCGACGAGGAGGGCTACCAG 6251 30 100.0 35 .............................. TGCCTCAACAACCTTGGCATTGCTGGCCATGACGC 6316 30 96.7 0 ............T................. | ========== ====== ====== ====== ============================== ======================================= ================== 36 30 99.4 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : TCCGTGATCATCCCTGGAGGGATTGAAACCGGTCCACGTGCACTGGTAGTGACCCGTTACCGGGTCCGTGATCATCCCTGGAGGGATTGAAACTGCTGATCAGAATGTGTGTGATGTAGACCACATGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCTGCGGCGTCAG # Right flank : CTTTAGGCGGCGGGGTTGGCCTGGCGTGCCGCGAGTCCGTGATCATCCCTGGAGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 1012-1528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000095.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1012 29 100.0 32 ............................. GATCGCGCACCCTCAGACGTGAGCGGTCCCAG 1073 29 100.0 32 ............................. ACAAACCCCACTGGCCTAGCGCGCCCTCGACC 1134 29 100.0 32 ............................. CACTCGCGGCCCCGCTCGCCCGCAAGGGCGTC 1195 29 100.0 32 ............................. GCACCCGGCGAGCTGGAACTGCGCAGCAGCGT 1256 29 100.0 32 ............................. GACACCGCGAACGCGCTTGCGCCGAGGATGGC 1317 29 100.0 32 ............................. TACCGGCCGACATCGCCATCGGCCGTGGTCCG 1378 29 100.0 32 ............................. GTCGACAACCTGGTGTGGGTGATCGACCTGTC 1439 29 100.0 32 ............................. GCGCGCGGCTCGTTGCGCGTCGCCACGCGCTG 1500 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GCCGTCCCCACGCCCGTGGGGGTGATCCG # Left flank : GGACCGGTGGGCGGACGCCTACCGGGCGCCGTCCCCACGCCCGTGGGGGTGATCCACACGGATGTGCGTGATCCGCTCGCTGGGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTCCCCACGCCCGTGGGGGTGATCCGTAGGGCGAGGCATGTTGCACGCCCCACTCATG # Right flank : GGCGTCGTCACGGTCCAGGAAGCCGGCGACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATCGAGATCGCCGAACGCGACGACTGGCGGCCGTCCCCACGCCCGTGGGGGTGATCCGACCCCGCGGGCGCGGGCCAGCGGGCCGGTGGCGCCGTCCCCACGCCCGTGGGGGTGATCCGAATCCTCCTGCCCGAGCATGCCTCCGTCGCAGGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1901-3819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFO010000095.1 Candidatus Frankia datiscae isolate Dd1 Dg vc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1901 29 100.0 32 ............................. ACCCCGCGGGCGCGGGCCAGCGGGCCGGTGGC 1962 29 100.0 32 ............................. AATCCTCCTGCCCGAGCATGCCTCCGTCGCAG 2023 29 100.0 32 ............................. CTGGACCAGGGACAGCGCCGGCTGCCGTAGGC 2084 29 100.0 32 ............................. CTCATCCCCGGACGGGCCTTCCCCCAGTGCGA 2145 29 100.0 32 ............................. GATCAGAGGCAACCCTAGAAGGCTTGATCCAA 2206 29 100.0 32 ............................. CCGGGACAGTCCGCCCCGTTCATCATCGTCAA 2267 29 100.0 32 ............................. GTCGTCGATGTCAAACCGGTCCCACACCGGCG 2328 29 100.0 32 ............................. GTCAGACATCAGCGGGCACCTCATCCGGGCTG 2389 29 100.0 32 ............................. CCCCGTCTCAGCGCCGAGCTGGCCGCGATGGC 2450 29 100.0 32 ............................. GTCATTGCCGCTGAGCGTGAGATGCGCAGCGG 2511 29 100.0 32 ............................. GCCATGTGCAACCGCTGTCCGGTCGAGACGGA 2572 29 100.0 32 ............................. GCCATGTGCAACCGCTGTCCGGTCGAGACGGA 2633 29 100.0 32 ............................. GTGAGCGCCGATGTCTGATCTCCGCACTGTTC 2694 29 100.0 32 ............................. CTGACGCCCGAGGCGGCGATCACTGCCGACGG 2755 29 100.0 32 ............................. AACGACGACGTCGGTCAGATCCAGATCATCCC 2816 29 96.6 32 .....................A....... CCGTGACCGACACCGAGCAGCAGCGCAAGTGC 2877 29 100.0 32 ............................. GCGCCGCCACCATGGCAGTCAGCCGGCGCGAC 2938 29 100.0 32 ............................. CGTCCGTCATGGTCATGGCGGGGGACCGGCAC 2999 29 100.0 32 ............................. ACGCGCAGGCGTGTCATGGGCTTGCAGGCGTC 3060 29 100.0 32 ............................. CCGTCCGGACCGTCGTTGTCGATCCACGTCGT 3121 29 96.6 32 ............................C CCGCCGATCGCGTTGATGACCTGAGCGGACGC 3182 29 100.0 32 ............................. ATCTCAACATCGCCAAGGACAAAACGCCGCTG 3243 29 100.0 32 ............................. GATGATCTGCGTGGCCATTTCGGGCTCCCTCG 3304 29 100.0 32 ............................. GCGCTCGACGAATTTCATCGTCACACCAAGGC 3365 29 96.6 31 ............................C GAACCAGGCGTGTTCGAACCAGCCGGCGCAC 3425 29 100.0 32 ............................. CGGGACGAGGCCGCCGACCTCGGCAAGGCGTT 3486 29 100.0 32 ............................. CGCCGGTATTCCTGTTCCTCCGTGCAGATCAC 3547 29 100.0 32 ............................. GCATGTCTCGGCCGACTGCCTTTGATTGGCTC 3608 29 100.0 32 ............................. AAGCGGTTCCGCTCCTCCTCCAGCATGATCCC 3669 29 100.0 32 ............................. CCGGCGACAATCTGGGCCCATTGCGCGTCGAC 3730 29 100.0 32 ............................. CAACGGCGCGGCTGGTTCGCGGGAAGGTCTTT 3791 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GCCGTCCCCACGCCCGTGGGGGTGATCCG # Left flank : GATCCGGTCGACAACCTGGTGTGGGTGATCGACCTGTCGCCGTCCCCACGCCCGTGGGGGTGATCCGGCGCGCGGCTCGTTGCGCGTCGCCACGCGCTGGCCGTCCCCACGCCCGTGGGGGTGATCCGGCGTCGTCACGGTCCAGGAAGCCGGCGACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGATCGAGATCGCCGAACGCGACGACTGGCG # Right flank : GTACACGGATGTGCTCAAGATGTACGCCCGCCGCTACCTGGAGCAGGAGGTCCAGCGCTGACCTCCTTCATCGAGCCCGGCCCGGAGTTCGGCAAGCTCTTCCGCGCGTTCGAGCACACCGCCTTCCGACTGGAGACGCGCGACGAGTACAAGTCCGCGAACGAGACGCAGGCGCTGCGCCAGTTCGTTGCGGGCGAGCCGGTAGACATGGGCTGGTTCCAGAACTGGCTGAGCATGATCCGGGAGGCCACCGCGGCAGGCCGGCGCTTCTCGCGTGTACGAGTCGTGAGCACGCCCCTCACCGACTACAGCCGCTTCGGCGTCTTCTGCTCAGGGCACACCAACGCGGCCGGCGAGGACATCCGCTACCTGAGCCGGGAGGACGCCGCTGGCCTGCCGGACTACGACTATTGGTTGTTCGACTCGTCCAAGCTGGTGCGGATGCACTTCGATGACGACGAGAACTTCCTGAGCGGTGAACTCATCGAAGACCCCGCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //