Array 1 3123814-3125786 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDDX01000001.1 Budvicia aquatica strain FDAARGOS_387 pRIID_90.contig.0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3123814 29 100.0 31 ............................. CAAAGTTAACGTTTATAGGCTTTGTCTTGTT 3123874 29 100.0 31 ............................. ATATCCTTAGGGCTAATACTCATAATTGAAC 3123934 29 100.0 31 ............................. CACTAATGGTGCAGAAAGGTATTGCTGGTAC 3123994 29 96.6 31 ............................A GTTCAGCGATTCTAAAGAGCCGCGAGCTTAT 3124054 29 96.6 31 ............................C CTCTACGGCGATACGTGAATAACCTGACAAT 3124114 29 96.6 31 ............................A AATAGAAAGGCACGCTGCCAGATAGGAAAAT 3124174 29 93.1 31 .A..........................A TCCTGAATCAGCTTCATGGACTCCTGCATAA 3124234 29 96.6 31 ............................G TGATGCGCTTTTGAATGCTATAAGTGCGGGA 3124294 29 96.6 31 ............................C AAGATTGGAAGTATTCTGCTTGCTCCCAATC 3124354 29 100.0 31 ............................. CTGTCCTGACTTTATTGATGAGCAAACCGAC 3124414 29 96.6 31 ............................C AATGGCAGATTGCCGCATAGGAATTCAGTAT 3124474 29 96.6 31 ............................A GCTAATCGGTAAGGCTCTTTACGGTAGGCTA 3124534 29 100.0 31 ............................. TAGCCCTACCCTAGTCTAACCTTTTGCTGAG 3124594 29 96.6 31 ............................A AGGTGGCCGATAAGGCCACACGCTTTAAAAT 3124654 29 96.6 31 ............................G TAGGTAAAATCTGTTATTCGTCGGTTATTGC 3124714 29 100.0 31 ............................. AATTGAAAGGGACCGAAAAGGCGCTTTTGGA 3124774 29 100.0 31 ............................. GACTCATATATCTCATATTGCAAACAAAAAG 3124834 23 55.2 0 ................TAATACC------ - Deletion [3124852] 3124857 29 100.0 31 ............................. TATGATAGATACTATTCTTTGTACCTCTCTA 3124917 29 100.0 31 ............................. GAGTTAACCAACGTGTTAACAGTAGCCGAAA 3124977 29 100.0 31 ............................. ACATGATATAGCTCTACCTCTTAGCTCTACC 3125037 29 100.0 31 ............................. AACAACTCGTTAACTCGTAACTCACTACTGG 3125097 29 96.6 32 ............................C AATAATAGATTTACCGTCTGGGATTTCGTCGT 3125158 29 100.0 31 ............................. ACGGGAAGCGGATTATCGTTGAATCTAATCA 3125218 29 96.6 31 T............................ GAAGGCTACGGGCGCTACGGTCAGGGGGGGT 3125278 29 96.6 31 ............................C ATTAACGGCGGTGAAAATATTACGGTTAAAG 3125338 29 96.6 31 ............................A GTCACAGACGCAGCACTCCGAGAAACTCAAA 3125398 29 96.6 31 ............................A CACTTCACCAAGCCGTGATAATTTTTTATTC 3125458 29 96.6 31 ............................A TAAGGTTTTGCGCCTGACTCATGGCATTTGC 3125518 29 96.6 31 ............................C CCATCGTTCAGCTTAAATGTTTTTCCAGACC 3125578 29 96.6 31 ............................A GACTCACAGGAGAATATTTATGCGTTTATCA 3125638 29 89.7 31 ......T......C.......C....... ATTTAACCTATAAGCCTAAGGTAATCTCTTT 3125698 29 93.1 31 ..A.........................G TATATAGTATAGGCCGTCCGTTCGGCTCTAA 3125758 28 75.9 0 ..A..........C....A..CC.-...C | C [3125784] ========== ====== ====== ====== ============================= ================================ ================== 34 29 95.6 30 CTGAACCGCCGCATAGGCGGCTTAGAAAT # Left flank : ATATGCGGTGTTCGTTCGCAAACATGCGAAATCGCAACGTGATATTGAACGAAAACGTCAGCACCTATTGAAGAAGGCCGGTGGTGAATGGAATGAAATAGCGCAGGAAAGTATGGATCGCTTTATGGATAAATTGTACTGCAAGTTACCTTTTATCTATCTGACCAGCCATAGCTCGATACCGGCTAAAGGCGAGGAGAAAAACCATTTCAGCCTTTTTATCAGTAAGGAAAACGGCATGCTGATGAAAGGAAAATTGACAAAATATGGTTTAAGCGACCCAACACACAAAACCAGCGTACCTATTTTTTAACGATTGAAGTTCTAAGTTCTTTAATAAATAGGCTAGAAGTGCCATAACCCTTTTTTTAGCGATAAATTAATCATTAGATAAAACAGACGGTTAAGAAAGTCGCTGAAAAAAAGGGTATTTGACTTACCAAAATAGAACATCCCAGAGGCAGCAATGCGTCTGGGGTGATTTTTTATTGAAAAGTCTA # Right flank : CAAAAAGCGCGCCAATGATAAAACTCACGGCGCGCTTTTTGTTCTCTGATAATGCCTCTATTCGACCAGACTATTAACGCCCGAACTTTTGCAGGGCGGTTTCCAGCGCTTTGCGCAGCAAATCACGATCGTGGCGATAGGGGACGTCGTCGGCTTCCAGCGGTTGCTGAACGATCACCTTATTGGTGATACCGGCAATATTGGTCTGAGGACCAACGATAACACCGTCTATTTTGCGGCCGTTAATCGCCTCTTCAACAATGGTCATTTTTTGCGTCAGGGTTAATGATGCGGCTGCCGGGCTGAGCTCTTTTGCTAAATTGCCGATATAGATAATTCGTGCCTTGCTGCGGCCAAGGGCCTGAGCCAGGTCGCCTAACAGGAGCGGCGGCATCAGGCTGGTCATAAAGCTTCCGGGGCCAATAAGAATTAATTCAGCTTCTTCTACGGCCTCGATGGCTTCTCGGGTAGTGCTGACTACCGGTTCCAGCATCAGCTCT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGCATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3130156-3132104 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDDX01000001.1 Budvicia aquatica strain FDAARGOS_387 pRIID_90.contig.0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 3130156 29 96.6 31 ...........T................. CATTAGAGGGATAGAGGGATAGACCCCTTCA 3130216 29 96.6 31 ...........T................. AAGCATGAAGGATCAGAACCGGTCAGAGATT 3130276 29 93.1 31 ...........T................T TAACTCAGCTTTGCGTTGCTCAAATCCCCAA 3130336 29 93.1 31 ...........T................C GATGATTGGGAAGGTTACAAGTTTGACCATA 3130396 29 93.1 31 ...........T................T CACCGATTTTCTCTGTAAGCTCTTTCAGGGT 3130456 29 96.6 31 ...........T................. GTTATGGCCATCAAGATTGGACCACCTCCCC 3130516 29 96.6 31 ...........T................. GCAGAATCACACCATTCGCAACTTGTATTGT 3130576 29 93.1 31 ...........T................T GAAGAGAGAAGAGACATAGAGGTACAAAGAA 3130636 29 93.1 31 ...........T................T GCTCCACGATGAAGTTAACAGCATGAATACG 3130696 29 93.1 31 ...........T................T AAGCGGTTCATGAGAATAGTTAATGAAATGA 3130756 29 96.6 31 ...........T................. ACCCAAGAATGACCATCTGAGCCCCAACCAC 3130816 29 93.1 31 ...........T................C AATGCTGAGTTAATAGTAAATGATGAGAAAA 3130876 29 100.0 31 ............................. GTATCACTCAAGTTGAGTCCATATTGGTTTG 3130936 29 96.6 31 ............................T AAAGCCTATTCAGTGAATAATTAAACGCTTA 3130996 29 96.6 31 ............................G TAAAGCTCTGGGCTACATGAATCAACGCTAT 3131056 29 100.0 31 ............................. GTTCGTGTGAATACAACGATGCAACCAGGAA 3131116 29 96.6 31 ............................C TCAGTGCTGTTCGCTTTTTCAGCGTTGGCAA 3131176 29 96.6 31 ............................T TTGATGCATCCTCTAACTTCCCTGCTAGCCT 3131236 29 100.0 31 ............................. GTGCAGTTACCGCCTGTTTCTTTTCGTTCTT 3131296 29 100.0 31 ............................. AAGGCACGTTCGATAGCTCGGACATAATGAA 3131356 29 96.6 31 ............................G GATGTATTCAACCGGAACGGTTACGCAACGC 3131416 29 100.0 31 ............................. GAACCTGAGAAACTAACTGGTGGAAAGCGGA 3131476 29 100.0 31 ............................. GGTCGCGAACTCGCATTGATGATATCTCTCA 3131536 29 96.6 31 ............................T TTATATAGGGCGTTGTGAAATGGGCCAGCTT 3131596 29 96.6 31 ............................T TATCGACTTTGACCTCCGCTTTCTGTTCCAG 3131656 29 96.6 31 ............................C AAATTCCAGGGTCACCTTTCGGTGGCCTTTT 3131716 29 96.6 31 ............................T AATGGACACGTTATCTCAGGGGGCTTAATGA 3131776 29 96.6 31 ............................C ATGCTTCAGCATGCTTGAAACAGTCATTGAA 3131836 29 100.0 31 ............................. TGATTTACCCGTTGCTGTGTAGGCTCCTCCG 3131896 29 96.6 31 ............................G ACGACAAACCCGACATGACCACCGCCATTAC 3131956 29 93.1 31 ...........T................G GAATTCAATCAACTCGCTTCGAATCAGCCAA 3132016 29 93.1 31 ...........T................T GTACGGAGCCAACCTGAGCGGAGCCGACCTG 3132076 29 89.7 0 ..............C......C......T | ========== ====== ====== ====== ============================= =============================== ================== 33 29 96.2 31 CTGAACCGCCGCATAGGCGGCTTAGAAAA # Left flank : CATGACTGAAAAAGCACTGGCTGAGATTATTGATTTATCCCGCCAGCGCTGGCCTCTACAGCGGGTGAGTGTTATTCACCGTATTGGTGAATTATTTCCCGGCGACGAGATTGTGTTTGTTGGCGTAACCAGCGCCCATCGCAGCTCGGCTTTTGAAGCCGCAGAGTTTATTATGGATTACCTGAAAACCCGCGCGCCTTTCTGGAAGCGCGAAGCCACGCAAGAGGGCGATCGCTGGGTTGAATCCCGCGATAGCGATAAGCAAGCCGCCGAACGCTGGTAATCAAGTTAAGTCCATCAACGGTTAGCAATGGGGTATATCTTTATATCCCATTGGCTCCGGTCAAAGACGAGCTATCACCCTTATTTTCGCTATAAATATAAAGCCAATAAAATCAGCCTATTATGGGTGGTTGATAAAAAATGGTATTTTAGCTATAGCGATCCCAATTTCCTGATGTTTAGCGGCGTCAGGCGGTGTTTTTATGCTAAATTCTCTA # Right flank : TACGCCATAAATTGGCCTCTAGCTCGGTTACCCAATATCCCGCCCCAGCAACCAACAATCCCACCACCTTGGGTAAACATCCGCAGGGGAAAATGTTACTATTCGCACGCCAGTTTTTGGGGGCGTCAGGCCGCTTGTTATTTCATCAGGCTAAATGAACTTTCCCCCGCTAATGATGATTTTTGATAGAGGTTTTTTTCATGACACGCGTTGCAATGGTATATCACAGCGGATACGGACATACGGCAAAGGCTGCTGAGGCAGTAGCTAAAGGGTTAATGGAAATAGGCGGAACCCATCTTGATATGCTTCCCATCGATGCAGAAGGTAATTTGCCCGAGGCTGCGTGGGCTATACTCTGTGCCGCAGACGGCATTATTTTCGGTAGCCCGACCTATATGAGCGGCCCGTCATGGCAGTTTAAAAAATTCGGCGATGCCTCTTCAAAGCCGTGGGCTGCGCAGCAGTGGAAAGATAAATTGTTTGCCGGTTTCACTAAT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : CTGAACCGCCGTATAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //