Array 1 91268-90310 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALQN01000018.1 Streptococcus agalactiae CCUG 37430 ctg120001208074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 91267 36 100.0 30 .................................... TTCTTTGCTTTCTTAAAGTCTTTTTTGAAT 91201 36 100.0 30 .................................... ATTTGCAACTTTCTCAAGTGTTGCGAGAGA 91135 36 100.0 30 .................................... TTTTCAGGAGGTATTTAGGTGCCTTTTACT 91069 36 100.0 30 .................................... GTTCGATTCCGACTGTTCCTATAACGATAA 91003 36 100.0 30 .................................... TCTATTGTCAGGATTCAGGCTACAAACCTT 90937 36 100.0 30 .................................... TGTCATTGTTAAAATCATTTGCATATTTTT 90871 36 100.0 30 .................................... TATTAGATAACTTAACTGATACAACGTTGT 90805 36 100.0 30 .................................... AGTCGTTTAGAGCGTTCGAAGGGCTGTTAA 90739 36 100.0 29 .................................... TTTAACTTCGATAAAAAATATTTGTCCGT 90674 36 100.0 30 .................................... TAATGACATGTGGATTGATATCTCAGAGAA 90608 36 100.0 30 .................................... GCAAGCACTAAATGAAGCTACTAGACTTAA 90542 36 100.0 30 .................................... CCTACAAACAGCTTGAAGCTGATTTGGTGT 90476 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 90411 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 90345 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //