Array 1 600-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHX01000069.1 Acinetobacter venetianus strain LUH13518 AVENLUH13518_contig000069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 599 28 100.0 32 ............................ TGGTAAACACAAACCTATTTCTTGAGTTATTG 539 28 100.0 32 ............................ TGGTAAACACAAACCTATTTCTTGAGTTATTG 479 28 100.0 32 ............................ TGCCGACTACTATGCACTTGATTTAAATTCAC 419 28 100.0 32 ............................ CAATGCACGACTCCCTGTGCCATCAGTTCCAC 359 28 100.0 32 ............................ ACTGCGAATACCAGTAACCAATTCATCAATAT 299 28 100.0 32 ............................ CGGTAGTGTTTGCATTTACAAGTCCTCTAAAA 239 28 100.0 32 ............................ CAAAATTTTTGCTAAATCTTTTTGAGTCAATT 179 28 100.0 32 ............................ ATGAATGGGCATTCTGAAACTGGTGAGCAGCT 119 28 100.0 32 ............................ TTCCTCGCGTCACCAAAAACCTATCAGCTTCT 59 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCGTCATCGCTTAGATGATTTAGAAA # Left flank : | # Right flank : AAAAATCCCTTCACCAAGACCACTTCGACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCTTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCTTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 181-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHX01000006.1 Acinetobacter venetianus strain LUH13518 AVENLUH13518_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180 28 100.0 33 ............................ AGTTGGCGCATCTACGATTCAAGTATTTACACA 119 28 100.0 32 ............................ CTACCGTGCGCCAGTTGATCGCTCGATGTGGA 59 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCGTCATCGCTTAGATGATTTAGAAA # Left flank : ATTTGGCAGCCAATACTTATTTACCTCAA # Right flank : ATGGTAAACACAAACCTATTTCTTGAGTTATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCTTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCTTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19625-20972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHX01000076.1 Acinetobacter venetianus strain LUH13518 AVENLUH13518_contig000076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19625 28 100.0 32 ............................ AGTACCGCGCTCGGGAATGCTTCGATTTCGGC 19685 28 100.0 32 ............................ TAGGATGGACGCCCGCATGGTTCGCCGAAATC 19745 28 100.0 32 ............................ GGCGCGATGCTTAGCATCTAGCAGATCATCCT 19805 28 100.0 32 ............................ GCCGTACTTCTTCACCCACTCCATGCAAAGAT 19865 28 100.0 32 ............................ CATCAACCCCACCGTTCCCTTGTATTTCACCG 19925 28 100.0 32 ............................ TTATTCGCATTCCACCAGCAACTACTGAACAA 19985 28 100.0 32 ............................ CATCAAAGATGGTCGATTTAGTTACTACCTAA 20045 28 100.0 32 ............................ AAAAGCGGATACGGAGGGGTGAAGATGTTGAC 20105 28 100.0 32 ............................ GTGTCAGCCACAATGGTGTCTCGAATGATCGT 20165 28 100.0 32 ............................ AAAGAAGCAATCCAAAAAGGCGACAACTACGC 20225 28 100.0 32 ............................ AACTGTTACCACGGAACTTATTAGCAGCAGTT 20285 28 100.0 32 ............................ TTTCAGGCTCAGTTCGTTTTAAAGTGGGTTCA 20345 28 100.0 32 ............................ TGAAACGGTGCGTAACGTGCCGCCATTATCAG 20405 28 100.0 32 ............................ GCAACTATTTACAGACACTTCAAAACAGGTGA 20465 28 100.0 32 ............................ ATACGCGCCAAAGCTAAAGTACAAATTGCCTT 20525 28 100.0 32 ............................ ATCACTTTTCGCCTGTTTGGCTTTTTGCCACA 20585 28 100.0 32 ............................ AGAACAGGCTGGAATTCTTTATAACATTGTTC 20645 28 100.0 32 ............................ TGATTGGAATGAATATAACTTGCGATGTGCAA 20705 28 100.0 32 ............................ TGGACGCTGACAAGCATTCATTACACGGTCAT 20765 28 100.0 32 ............................ CAACCCGATTAAAATCAAAAGAGTTACTCCAA 20825 28 100.0 32 ............................ TACTTCATACGAATATTCACCATTGTCTTTAT 20885 28 100.0 32 ............................ TACAGGGGTATCTACTATTCAAGTTTTCACAC 20945 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 GTTTGTCATCGTTTAGATGATTTAGAAA # Left flank : TATGATGTGGCACGCATGCGCTCATAGCTCAACTGGATAGAGTACAGGTCTCCGAAGCCTGTGGCGTGGGTTCGAGTCCCGCTGAGCGCACCATCTTCTTATTTTACTTAATCCAATTCATGATAAAAATTATTACTAAGATAAGAATCCCCCTCACAATCCAAACTTGTTTTAAGTAATCATTTTTTATGACAATCCTAATTTAGCAAAATTGCAATACAAAATTACTTATGGATCAATATACAAAAATCCAGCTTTCGATAGAAAATTCTTTTTTGCTTTATCATATTCATATAAAAGTAACATCAAAACCTTCATATGTAGTTTATTAATAAATTCCCAAGAACTTATTTTAGGTCATATGTTTAGTTTTATTTTTGACTCTCTAATAAAAAAATAATAAAATCAATCAACTAGCAACATATACTCTTTTTGAAGTATTTTCATTCATTAAAAACTTATATAGTTGATTTTAGGAGTTTTGTTTATCCTTAACTCTA # Right flank : AAACTGAAGTGTGATAGCTTTCGCATTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTCATCGTTTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTGTCATCGTTTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 26719-25911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHX01000079.1 Acinetobacter venetianus strain LUH13518 AVENLUH13518_contig000079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26718 28 100.0 32 ............................ AAACTGAAGTGTGATAGCTTTCGCATTTTTGC 26658 28 100.0 32 ............................ TGTAGCTTTTCCACCAAAAGCGGTGTGTTGCA 26598 28 100.0 32 ............................ TAAACTTTTAGTGACTGCTTTTAATCTGACTA 26538 28 100.0 32 ............................ AAGAGGTTGGGATCATGGCAGAGGAATAGATA 26478 28 100.0 32 ............................ CACAGCAGCCAACACAAACAAGTGAAGCTGAT 26418 28 100.0 32 ............................ AAGTTGAAACCCACCTAGCCCATCTTGCATAT 26358 28 100.0 32 ............................ CAGTTGCTTTTCGTCATCACGTCACTGACGGC 26298 28 100.0 32 ............................ ATGTAACTGCCAATATGGTGGATCGGCATACA 26238 28 100.0 32 ............................ TGATCTTTTTGAAGCTCAGCTTGCTTCAGAAT 26178 28 100.0 32 ............................ GAGGGGAGTGTAATTGGTATTCAAACACCAAC 26118 28 100.0 32 ............................ ATTTCATGCATAACAAAACTATGAACAATTTA 26058 28 100.0 32 ............................ ATTTGCACCAACAAAAGTACAACTAGGAAAAC 25998 28 100.0 32 ............................ ATTAATGCAAATCACCATCCTTTCATGAATCA 25938 28 82.1 0 .......................CTCTG | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTTGTCATCGTTTAGATGATTTAGAAA # Left flank : | # Right flank : ACTTGTCTAATATCAAATTTTTCATATAATTAATTTTAAAACAAGGGATTAGCTTTTAGCAATATTATTAAGAAGCTCAGGTTCTAGCATAAAAAAATCTTTCCCAAAATTCTCTAAAGGAATTTCCGAAACATTAATTTGATATTCAATATCACCATTCAAAAAACTTTGTGATTTCTGTATAGAACGCTCCCAACCAAACCCCTTTCCGCATTGCATTAGTAAATACTGATAGACCTTTGCATCATTAATTTTTAATAAGAATGTGTTATCTGATAATTGGTGTATTGAGACATTTTCAGAATATTGCACATCAATCATGATCTACCACCTAGAATGAATAATAAATGATCAATATTTATCATTATAGATAATTGATGTGATTTCAATTAATTTTTCATAATTATTAATACGTTAATCCACATTTAAAGCATAAATAACCACATAAGTCTCGATCTGGCAAAAAATGTCACTCTGTTGATTATTAATAATCGCTTAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTCATCGTTTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: R [matched GTTTGTCATCGTTTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHX01000093.1 Acinetobacter venetianus strain LUH13518 AVENLUH13518_contig000093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AAAATCCCTTCACCAAGACCACTTCGACAAAA 61 28 100.0 32 ............................ ATGGATTCAATGGAGGGTAACGGGATGAGCGG 121 28 100.0 32 ............................ GAGTCGATGCGTCTAGTGACGCCCAGCGTGAT 181 28 100.0 32 ............................ AAAACGCTTAACGCCAAAAGATGGAATCCGTT 241 28 100.0 32 ............................ ATCAAGTGAATTACGTTTTTCTGTTTGAGTTG 301 28 100.0 32 ............................ AATTTTTCAACAGCAGCTGCACGAATCATAAA 361 28 100.0 32 ............................ ATTTATTTTCTAATTTTTTGATTGCCCCAAAC 421 28 100.0 32 ............................ TAAAAGTTTTGATCATGTAAACCCTCGTAATT 481 28 100.0 33 ............................ ATAAGTGGTGAAATTCTCAATTCTTCAGGTTAT 542 28 100.0 32 ............................ TTGGTCTTGCTTATCGCTCTATGAATGTTTCA 602 28 100.0 32 ............................ AAAGCTGACTTGGAGGATGCACAATCCTCCGC 662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCGTCATCGCTTAGATGATTTAGAAA # Left flank : | # Right flank : AATCGCTCACTCTAATTCTAAACTCATTCTTAAAACCAACTTAGTATTTGATGTCTTCAAAGAATCAAACAACAAAGTAAATAAATTCGTTTTTGAATGTAGTTTTAGTACATTAACTCGCCAACAACTCTCTCGCTTTGCTCAACAAGTTCTGTTGATCAATCTCTGAAGGATGGAAGCTAGCTTTATAAAATGCCAAATAATCAGGTAATAAACGCCAGATCATTTGTGTTAGGCCGGCTAACGTTTTCGCATTCTTTATAATTTGTTTTGGCTGATACAGTGTATTTCGACGATCTTGCCATACTAGATGACTTGTCATAATTACAGTACTACTGATAAACCCTAAGGTAATGGTTCTCATACTTCGACGGCGCTGAGCAAGATTATCAAAAACCTGTTGATATACATCAAATGCCACATGTTTATGTTCAATTTCTTCAACAGCATGCCAAAGCCAAAGATTTTTCATATTTTCAGATAAACCTTTGAACATGACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCTTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCTTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 81783-84093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRHX01000010.1 Acinetobacter venetianus strain LUH13518 AVENLUH13518_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 81783 28 100.0 32 ............................ AAACCTTTGGAGAGGGTCGATGGGGGTCATTA 81843 28 100.0 32 ............................ TAAAGAGTGCGAGCGTCTGCAAGGTTTCCCGG 81903 28 100.0 32 ............................ TTGGTGCTCTGCCCCGGATTGGGCGCTTGCCC 81963 28 100.0 32 ............................ AATTACGTGATTACGGGCTTACAGCGCTTAGC 82023 28 100.0 33 ............................ CGCTCGGAGCTGTGACACATCCTCGGACTGGCC 82084 28 100.0 32 ............................ TGTAAGCATTGTTAATAAAACTAGATAAATCA 82144 28 100.0 32 ............................ AAAGTGGTGGCCTCCTGCACAGATGACATTGC 82204 28 100.0 32 ............................ TCTGAAATACCAAGGTGCTCATTAGTCAAACC 82264 28 100.0 32 ............................ GTGGGGCCGTTCCAATCGTCAACCGGCTCGGA 82324 28 100.0 32 ............................ ATCAGAATTAATCAGGATTTTAGCAAATTGGT 82384 28 100.0 32 ............................ TAGATGATCTATTGATGCACCACGCGGTAAAT 82444 28 100.0 32 ............................ TCGGCTATCGCATTGTGACTAAAGGTTTTTGC 82504 28 100.0 32 ............................ TGTTTGTTCAATCGACCTAGATGATCTATTGA 82564 28 100.0 32 ............................ ATCCAGTCAAATCACTGTTTGGGTCATTTGTA 82624 28 100.0 32 ............................ GATAAGTTTGGCAATTACAAGTTTGAATTATT 82684 28 100.0 32 ............................ AATTAAATTTGAAGCTTTACAAATGTTGCCGT 82744 28 100.0 32 ............................ TGTTTTTCACGCTCAATTGCTTGCTGTTTCAA 82804 28 100.0 33 ............................ ATATGGATGCATTTGTAAATAGACTCACACCGA 82865 28 100.0 32 ............................ AAGCGGAAAAAAGAAGTGGGTGCTTTCTTATC 82925 28 100.0 32 ............................ ATTAATGATCATTTTAGCAATACGAGTTTCTA 82985 28 100.0 32 ............................ TAGATCATCAACAAAATCTAAATCTAAGTGTT 83045 28 100.0 32 ............................ GTCTGCTTGCTCTTTCAATTTAAAACCGTTTG 83105 28 100.0 32 ............................ AAGAGGAATTGCAATTAAGTACACCGATGAAA 83165 28 100.0 32 ............................ AGTAGCATCACCTGTAAACTGCCCCTGTGCAT 83225 28 100.0 32 ............................ AATATCTTGGAAATTTCCATCGCTACGAGGAT 83285 28 100.0 32 ............................ AATACTTCAGCAAAAAGTTTCATCCCCTCACG 83345 28 100.0 33 ............................ CTAAAAAATGACATGAAGTACTCAAAGTCTTTA 83406 28 100.0 32 ............................ TTGAAGCCTGCAAATTGCAGGCTTTAATATTT 83466 28 100.0 32 ............................ CAACAGGATAAAGACAATGGTGAATATTCGTA 83526 28 100.0 32 ............................ CGATTGAGCCAGTCCTGGACGCTGACAAGCAT 83586 28 100.0 32 ............................ ATCGTATGAATGAATAATCCATCTGCCAGTCG 83646 28 100.0 32 ............................ AATTGTTCCTTGGATGGGTGGTAAACGTCGAC 83706 28 100.0 32 ............................ GACACGTCTACGGCGCGACCCTTGCGCCCAAA 83766 28 100.0 32 ............................ CAAAGCGTAGGCAAACATACTGACGATCCGTC 83826 28 100.0 32 ............................ ATAAGTACTGAATACCATTGAGTTTTGCTGGT 83886 28 100.0 32 ............................ GCTGCCATGTGTCCAGTAATATTGTAATAAGC 83946 28 100.0 32 ............................ ATACCAAATTCTTACTTCGCTATTTCTTGCAA 84006 28 100.0 32 ............................ TTCAGCAATGACAGGCTTATAGCCCCCGTGAT 84066 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 100.0 32 GTTCGTCATCGCTTAGATGATTTAGAAA # Left flank : TCGATGGGCAAAAGCTTTATATAAAGAATTGGCAAAAGGTTTTAAATTTAATTTCACTCGCGATGAGGGAAAAAACTCCCACGATACCATTACAGATATAGCCAATAATTATCTGGATCATGGTAATTATATTGCTTATGGATATGCAGCCGTTGCCCTAAATGGTATGGGAATTAGCTTTGCCTTACCTATCTTACACGGTAAAACCCGCCGTGGTGGCTTGGTATTTGATATTGCTGATTTGGTTAAAGATGCTTTTGTGATGCCACTTGCTTTTTCTTGTGCTGCGAAAGGACAAAATCAAAAAGACTTTCGTATGCAATTGATAGAAACTTGCCAAGATAGTGATCTGTTAGATTATATGTTTGGCTTTATTTCTGAGCTATGTTCTAAAATCAAATAAAATCATACTGTTACAAACACAACTTCTTTTTGAAGTATTCTCATTCATTAAAAGCTTATATAATTGATTTTAGGGGTTTTGTGCTTACTCAACTCTA # Right flank : ACTTGGATACTTACCAATCTTGCTAGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCTTAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCTTAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //