Array 1 82055-79584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRB01000006.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN024721 CFSAN024721_contig0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82054 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 81993 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 81932 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 81871 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 81810 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 81749 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 81688 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 81627 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 81566 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 81505 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 81444 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 81383 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 81322 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 81261 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 81200 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 81139 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 81078 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 81017 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 80956 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 80895 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 80834 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 80773 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 80712 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 80651 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 80590 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 80529 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 80468 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 80406 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 80345 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 80284 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 80223 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 80162 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 80101 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 80040 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 79979 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 79918 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 79857 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 79796 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 79735 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 79674 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 79613 29 100.0 0 ............................. | A [79586] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101354-98600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWRB01000006.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CFSAN024721 CFSAN024721_contig0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101353 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 101292 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 101231 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 101170 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 101109 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 101048 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 100987 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 100926 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 100865 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 100804 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 100743 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 100682 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 100621 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 100560 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 100499 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 100438 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 100377 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 100316 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 100255 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 100194 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 100133 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 100072 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 100011 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [99990] Deletion [99972] 99969 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 99908 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 99847 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 99786 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 99725 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 99664 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 99603 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 99542 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 99481 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 99420 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 99359 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 99298 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 99237 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 99176 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 99115 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 99054 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 98993 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 98932 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 98871 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 98810 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 98749 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 98688 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 98627 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 46 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //