Array 1 92293-93516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXU010000008.1 Listeria innocua strain FSL L7-0303 NODE_8_length_99266_cov_125.630161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 92293 36 100.0 30 .................................... TATTCGTCGGTCTCATGTGTTACGTTGTCA 92359 36 100.0 30 .................................... TTCGCACAGGTCGCTAGAATCAACACCTAT 92425 36 100.0 31 .................................... GAAGGATTTGTCGTCTTAGGGATTGTATAGG 92492 36 100.0 30 .................................... TACTATTTTTACGTCATAGCAAATATTTAA 92558 36 100.0 30 .................................... AATTGAAAAACTAGAAACACTGGAAGCGAG 92624 36 100.0 30 .................................... TTTCTACCTTAGAACCAGTGTCAACAACTT 92690 36 100.0 30 .................................... TTGCGCTTGTGTCTTACTAATATGCTTTAT 92756 36 100.0 30 .................................... AATTTAGTGATACAGAAAGACAAACAATCT 92822 36 100.0 30 .................................... TTTTATTTCTGCAATTTTTCGCTCTCGATA 92888 36 100.0 30 .................................... TGGAGAAATCGGCATTATGATGATGAACGC 92954 36 100.0 30 .................................... CCAGCCCGTTGTTTATGCAACCAAAAATAA 93020 36 100.0 30 .................................... TTCGAACCGCGTAATTGTTGTTAGGTGCTA 93086 36 100.0 30 .................................... ATATAAAGCGACACATATTTTTGACGATGT 93152 36 100.0 30 .................................... TTATCTCATCCACAACCATCAACGCAACAA 93218 36 100.0 30 .................................... GAAACAATTGAGTTCCTTTGCACCTCGCTT 93284 36 100.0 30 .................................... AAGGTGCTTATTACAATAAACCGTCGCAAA 93350 36 100.0 30 .................................... TTCTCCTGTTACTTATACTAGTCCAGAAGT 93416 36 97.2 30 .......................G............ AGAGAGGGTGAACTCTAAATAATCGGAAAT 93482 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAATTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACATCTCTCAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAAGGCCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACCACTACATTCGAAAATAAGACAAATTTTATATACCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTTCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAAATATTAATTATTAAAAATAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1145479-1144353 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXU010000001.1 Listeria innocua strain FSL L7-0303 NODE_1_length_1163239_cov_82.302637, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1145478 29 100.0 37 ............................. GTTGGAAATGTTAATCCTTCTGGAAAAGGCATGAACG 1145412 29 100.0 34 ............................. TCGATTTGCAAGATGATCGGTGCAGGCTTGCTAT 1145349 29 100.0 35 ............................. AGCGTAAATGCTCCCGGCGGAAACACTGAAACAAA 1145285 29 100.0 34 ............................. TCAATAAAAGCAAAACGATGATGACGGCAATTAC 1145222 29 100.0 36 ............................. CACTCAAGTAACAACTTGGAACGCCCGCTACTGATT 1145157 29 100.0 35 ............................. ATTATGGGCGGGGATATCTATATTAGATCTACAAA 1145093 29 100.0 35 ............................. GAAATTCGTCAATCTGCACTTTGCACTTTTGCGTG 1145029 29 100.0 36 ............................. AGCCTTGACACGTGCCAGTAATATTTTCCCAAGAAA 1144964 29 100.0 36 ............................. CTAAATATGGCACTTGGTTAATCACTAACACAGAGC 1144899 29 100.0 36 ............................. CGCTCAATGAACTGGGGTATGATGCGGAGTGGCGAG 1144834 29 100.0 35 ............................. GTGGTAAAATTGGCGGTTTTTTCATCAATATTCGG 1144770 29 100.0 36 ............................. TTGTAATCTTCGAGTGTTTTCTTTCCATCGGCAACC 1144705 29 100.0 34 ............................. AAGGAAGTCCGAAACTTTTCGCTACTTGGGCAGT 1144642 29 100.0 37 ............................. ATACAAATCGATGAGGGAGCAGAGCTACAAGAAATAA 1144576 29 100.0 36 ............................. GAATCCGATGTAATGATAGGCACTTATCCTTGTACT 1144511 29 100.0 37 ............................. TTTAAATAGAAAAAGCGGCATAAAAAGTTGTGGTTGA 1144445 29 100.0 34 ............................. AGTATAAGCACAGCAATTCAGACAGCTATAATCT 1144382 29 96.6 0 ............................C | C [1144358] ========== ====== ====== ====== ============================= ===================================== ================== 18 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGATCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTATCTCTCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCAACAAAATCCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCCCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTTCTTCTCGACACCAAACGTCTTGGCTGCGAGTTTGGTATTGGAGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //