Array 1 93026-92204 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJGB01000009.1 Escherichia coli strain 799 NODE_9_length_168330_cov_110.757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93025 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 92964 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 92903 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 92842 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 92781 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 92720 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 92659 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 92598 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 92537 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 92476 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 92415 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 92354 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 92293 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 92232 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120313-118575 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJGB01000009.1 Escherichia coli strain 799 NODE_9_length_168330_cov_110.757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120312 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 120251 29 100.0 32 ............................. AAAATAAATGATAATCAGACGGTTAGCAACGT 120190 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 120129 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 120068 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 120007 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 119946 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 119885 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 119824 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 119763 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 119702 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 119641 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 119580 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 119519 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 119458 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 119397 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 119336 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 119275 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 119214 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 119152 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 119091 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 119030 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 118969 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 118908 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 118847 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 118786 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 118725 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 118664 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 118603 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTATCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //