Array 1 659748-660708 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNHG01000004.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 659748 36 100.0 30 .................................... GACGAGAGGGTAGCGGTGCAGGGCGGCGGC 659814 36 100.0 31 .................................... CATGAGCGCCCGCTGGTATTACGAGACCGTC 659881 36 100.0 30 .................................... AGAACCGTCACCGATGGTCAGCTCACGGTT 659947 36 100.0 30 .................................... CCCCCCCCATCTGCGCCGGTGGCTGGCGGT 660013 36 100.0 30 .................................... GCAGACGATATGCACAAAATGCAGAAGCCG 660079 36 100.0 30 .................................... GGAGACCGGCAGCAGCCGCCCTTCGGTGAC 660145 36 100.0 30 .................................... GATCGCGTCCATGGCGCGCGCCCACCGTTC 660211 36 100.0 30 .................................... GACGATGGACAACGCGACTTCGACCGGCAC 660277 36 100.0 30 .................................... GACGAGAGGGTAGCGGTGCAGGGCGGCGGC 660343 36 100.0 30 .................................... TGCGACAATATCGTGACCAACCTGCGCCTG 660409 36 100.0 30 .................................... CCCGCGCTCCTGGATCTGGTCTTTGCCGTC 660475 36 100.0 30 .................................... CCAATCTGCCGGCGGTGCGAAATCGACTAT 660541 36 100.0 30 .................................... AGTGGGTAAGTGCACACCTGTTCACACGCC 660607 36 100.0 30 .................................... CAAGAGAAACCAACGGCCACGAGATAGGTA 660673 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 AGCTTAGCCGTTCAGAAACCGCAGGCCAACCGCAAC # Left flank : CCGTCCTCGCTGGCGTCGAAGAGCTTAGCCGTTCAGAAACCGCAGGCCAACCGCAACACGCTTCTGCCTGACGACATGGTCGCTGAGCTTAGCCGTTCAGAAACCGCAGGCCAACCGCAACGTGGTCGGGGTCGCCCGTGATAACCTGCGAAGCTTAGCCGTTCAGAAACCGCAGGCCAACCGCAACGGAGACGACCCACGCCCGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTAGCCGTTCAGAAACCGCAGGCCAACCGCAACGAGACTGACTAACATCAACACGCCCAAAGG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCTTAGCCGTTCAGAAACCGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.10,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 662481-663506 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNHG01000004.1 Pseudogemmobacter bohemicus strain Cd-10 scaffold00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 662481 36 100.0 30 .................................... CGAGATCTCCAACACGCGGCACACATCGGC 662547 36 100.0 30 .................................... CATCATGGCATCGACATCAATGCGCCAGCC 662613 36 100.0 30 .................................... CAGGCGCTCCGTGATCTGATCGTGAGCGTG 662679 36 100.0 30 .................................... AGTTCGAGGCGGTCAGGATCGCGCTGCGGC 662745 36 100.0 30 .................................... CGCGGCAGATAAGTGCCGGGCTCGGCATTT 662811 36 100.0 30 .................................... GCAATATCCCGGCGATACGGCGGGCAAAAA 662877 36 100.0 30 .................................... TCTGGCGATCATATGGCGGCCCAGGCTGAA 662943 36 100.0 30 .................................... GCGGAATTAGGGGGGCATCCGATTCCCGGC 663009 36 100.0 30 .................................... TGATCGATCTCGCCCGAGGGCGGATCGGCG 663075 36 100.0 30 .................................... GAAATACTGCGCGCTGAAAAGGGATTGGAT 663141 36 100.0 30 .................................... AAGAGCAAGGATCTCCATGATCTCGGCCAG 663207 36 100.0 30 .................................... TCATCAAGCGCCGCCGCCCGCAATGGCGAG 663273 36 100.0 30 .................................... TGAAGAAAACGAACGGCGTCAGGAACAGAT 663339 36 100.0 30 .................................... AAGACAGCGCGCCATGCGGAAGAAGCGAGG 663405 36 100.0 30 .................................... CGCATTAACATAGGCCAGCGCCAAACCGTC 663471 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 AGCTTAGCCGTTCAGAAACCGCAGGCCAACCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGCAACGCGGGTGCCGCCTTACTTCGTCAGCATGAC # Right flank : CACTGATGCTCATCGATGACATCAGGCAGCATCATATTGAAGGCGGCCCTCCTGATCGGCTTTCTTGTTGTTTTGACGGTGGCGGATTTTTTTGACACAGGGATCGGAAGAGGGTTGGGCCTGTTTCTCTTTGGACTGCCTGCTGGAATGTCAGCGCTTCTCTTCGTCGCCAATACCGTACGCCCCGACGATGAGGCGGGCGCTGTCAGCCTGTTTCCATCGGCCATTGTCAGGCCGGAGGGGCTTGCCGAGACTTTCTGCTCAGCGAGATCACCGCTTTCAGGCCGCCTTCGGGGCGGTTTTTCAGGACGATTTCGCCCTGTTGCGCCTGAATGATGGATTGCACGATGGCAAGCCCAAGACCCATACCGCCGGTCTCGCGCGAGCGCGATTCCTCTAAGCGGTAGAGCGGCTCGAAGACATGGGCCAATTCCTCTTCGGGAATGCCGGGGCCGGAGTCGCTGACGGTGATTTCCACGTTCTCGGCGGTATCGGAGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCTTAGCCGTTCAGAAACCGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.10,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //