Array 1 3812-3509 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVMC01000032.1 Clostridioides difficile P28 gcdP28.contig.32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3811 32 100.0 37 ................................ ATGTCTTCTGTTGAATCAATAAGCTTAATTGTTGCGA 3742 32 100.0 36 ................................ GGTTTGTATATCTCCATTTTATACCCCCTTACCATG 3674 32 100.0 33 ................................ CACTTTCCAACAATCTAGGTGCGTATCATGTAT 3609 32 100.0 37 ................................ TAAGCGTTGTGTTATAGTCAAATGCTCCCGTCGTTAT 3540 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 99.4 36 GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT # Left flank : AATGCTCACAAATACGGATTCATTTTACGTTATCCCGAGAATAAAACAAATATAACAGGGACAGCAAATGAACCGTGGCATTTCCGTTATGTAGGAACTGAAGCCGCTACAGAAATATACCGTAAAAATCTGTGTCTGGAAGAATATACACTGCAGCATGGTTTCTCATATCCCGTTTCAATAAAGCGCTGATAGCAAATGGATGATATTCATTATGAACCGTCCAGTTATTTTCCTATGAGGTCAATACGATTTTTATTTCATACTGGAATGTATCCTTTTTATGTATTCGGAGTTTTTTCTGTTATAATACTAGTAGATGGTTATCCCATTAAATAATCCAGCGCGAACCATTAGCTCACATGAATTCCCTGGGAGGTTCGCGCATCATTTTGTTCAAATTCGCACAAATGTAACAATTTCAACGCAATTTTCATTAACCAAAGTTTTATAATTGTGTAAATTTGTTTCATTTAGGGGATTTCATGGGATTTTTCACG # Right flank : TTATTATAAGATTTCCCATTATCCTATGAAAAAATACGATTTCCTTTTGCCTGACAGTAACGCAAGATCATTACAGGCTTAAGAACATCGTATTTTTTAATTCATTTTATTTATCCGCTCTTCTTTTCATATGTGCGCTTTAGCTGTTCCATAAAAACAGCAAGGACTGCAATATCCGCAGGATTCACACCTGAAATACGGGAGGCCTGTCCCATCGTCAGAGGCTGTACCTTATTCAGCTTCTGTCTTGCCTCCAGTGACAGATTCACCACCTGATTATAGTCAAACCGCTCAGGCAGGCATACCTTGTCCATCGCCCGCAGATGTTCCGCATCACGCTTGGCTTTTTTTATGTATCCCTCGTAGCGAATCTCGATTTCCACAAGCTTCGCAATCGCAGGATCAAATTCGCGTTCCAGATAAGGCTCTAAAAGCGCGATGGTAATTCCCGGTCGCTTCAGCAGCTCTGCAGCACTGATCCCCTCCTTCAGCACATCCAG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTAGCCTCCCTGAGGCTAGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10401-10234 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVMC01000046.1 Clostridioides difficile P28 gcdP28.contig.46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 10400 32 100.0 34 ................................ ATATAGATATGCGTAATTGTATCCATCATATTTG 10334 32 100.0 37 ................................ TACTTTTAGCAATCGTACAGATACCTGAATAATCTGA 10265 32 81.2 0 .....................ACAT.....GC | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 93.7 36 GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT # Left flank : ATTTACCTGAATATCCACCGTTTTTATGGAAGTGATGAGAAATGCTTGTTATAATAACTTATGATGTCAACACCCAAAACAGCGCAGGTAAAAAAAGATTAAGGAACGTTGCTAAAGTATGTGTGAATTATGGTCAAAGGGTTCAAAATTCAGTTTTTGAATGTGTTATGGATCAAGCGAAATGCAGAGAGGTTAAACACAAGCTTACTGGATTAATTGATAAAGAACATGATAGTTTAAGATTTTACTATTTAGGTAACAATTACAAAAATAAAGTAGAACATATAGGAGTTAAGCCTAGCTTCAATGTTGAAGAAGATGTATTGTTTATATGAATTATTTTGCGCGAACCGTAAGCTCACATGAAACCCTTGGGAGGTTCGCGCCTTAAAATTGCGTTTTATCGCATTTTGTAACAGCTTTTTCATTTTCATAACATTCAATAGTTATGAAAAGAAATGATTTTGTTACAAACGTCTTAAAATGCAATAATTTTCACT # Right flank : TTAGACAAAAAAAGCAAAGCACTCCTTCTAATGCTATATTTTATAAAATCCTACTTATTCTTCATATATGGTATGACTTTAGTAAATCATTGAAACCTCCAAAAAACCTTTATTTATCGTACTTTCGCAAGTTTTAAAAAGTATATACCATTGAATTTATCGTTTTCACGGAAAATTTAGTCTTTTATATGTGCCTATCTGTGAGGTGTAGTGTACCTGTATGTAATTGTATCGGATTACGAGTAAACCAACGAGGAAACGATAGAAATGAGACACTGTACATAAAGTTCCATCAATTACTGTTTTGCAAGTGAATCAGCGTTACTGCAAATTTATTAGCCATTTAAATCTGGATATTTTATTCTATAACGCATACAGTGATGAAGTACATGAAGGTTACATAAAAATATGTACAGAAAAAGAATATATTGATGTGTGTCTTCCTTTTTAAGTGCTTAAAAACTTAATGAGTGCAAAGCAGCATAAAGCTCCAATTGTAC # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTAGCCTCCCTGAGGCTAGTGGATTTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 146310-146961 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVMC01000007.1 Clostridioides difficile P28 gcdP28.contig.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 146310 34 100.0 34 .................................. ATCATCATTGGTACACCCTCTCTTAGTAAATCCT 146378 34 100.0 35 .................................. TCCTTAATTATAACAGAAGAATGATTTAATGTCAA 146447 34 100.0 36 .................................. GCTTTTATACCTACGTAAATATATAAATTGCTTATT 146517 34 100.0 34 .................................. GTGGAAGATTGCGGAGGGATGATTGATGCTGATG 146585 34 100.0 36 .................................. GGCTATATGACGAATTATAAGGCTGTACAGCGCAAA 146655 34 100.0 36 .................................. CTCATTGTTGCGGTCACCCTATGGACATTATAGGAA 146725 34 100.0 33 .................................. AACGGTGCGTCATGGTCATTGACCTTCGATACG 146792 34 100.0 34 .................................. ACTTTGTTGTATTTTGTCTTTTCCGAAAAATACG 146860 34 97.1 35 ........................T......... TTCCAGCCTTTATCGACAGTATGATTGAATTGTCC 146929 33 76.5 0 .C..........TT.A.......GC....-...C | ========== ====== ====== ====== ================================== ==================================== ================== 10 34 97.4 35 GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT # Left flank : ACTTGGTGCTATGTTAGGGGATCCTATTGTAAAGTCATACACGGCTTTCCCACTAGCCAGCATGTTTTGTTTTTCTTCATCAAGCCTGCTGAAAACACCTTCCGCAAGTAAATCCATTCGTTTGGAAAATTTCATATTCTCCCTCTTTCCTGATATTTCATATTTCTCTCATTATAAAAGAAAAGACCGGTCCCTTCAATAGCTGATGGGTGAATTTCACAACCTTCGTATGGTGTACACTAACAGATTCTAAAAACTGACCTCAATTACATTTTTGTTTAGCACTTTGTAAAGTTTCTGTTATAATAAAAGTAGAGATATCATATCCACTCACATGTTCTTTGCGCGAACCCCAAGCTCACATGATTTTCCAGGGAGGTTCGCGCCACATAATTGTGTTTTAAAACAAAATGTAACAATTTACAATAAAAGTACGATAGATAATTAAATGTAAATAATATTTTTTGTTACATTCGGAGTGGTTTATCACAAATCTCGCA # Right flank : CAGCACAGTACAGATTTTGCATTCCTCCACACTACTTCCCATCCAATACCATTTGCAATCTCTCTCTAAACAGCGTACAATAAACACATAAAGTAAACGCTTACAGGAAGGGGATTTTTTATATGAAATATGTATGCGAAATATGCGGCTACATGTATGATGAAGCTGTTGAAGGCACCTCCTGGGTCAACCTTGATAGCACATGGAAATGCCCGCTATGCACCGCTCCAAAGGAATGCTTTAAAAAAGTAGCATCAGAGGAAGACGCGTCAGCTACATCCAAAAGCAACGATGCCACCTCCCTTGCCATACAGAAAAATGCCAAAAAGGAAGACATCCTGGAAACCAGCATGTCCCTCATTCATGAAATGGCTATTCACAACGCCAGCCGTATCGAAGCAATGCGCACACACAAATCCGTACCAGGATGGGACGACATCCTGCTATTAGGAGGACAACTCGCTCACCCGCCACTTGCTGATAAAGCTGATGTTGATACA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: F [matched GTCAAGCTCTTTCGCGGAGCTTGTGGATCTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16598-16838 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVMC01000069.1 Clostridioides difficile P28 gcdP28.contig.69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 16598 33 90.9 36 .................G....T.G........ GAAAAATTAAAAGGCTTATATGACAAAGAATATATC 16667 33 100.0 35 ................................. TCTGGCAGCTCCTTTTTCAATTGTATCTGACAAAT 16735 33 81.8 34 .................GA.TATA......... TTATGTATGATAATTTGAAGATAAAAGGAATGAT C [16749] 16805 33 60.6 0 AG.....T....T....G...T.AA.CAA..TC | A [16809] ========== ====== ====== ====== ================================= ==================================== ================== 4 33 83.3 35 GTCTAGCCTCTCCTGAGACTAGCGTATCTAAAT # Left flank : GACTGGTTAAACAGCAGCTGGAGCAATCCTGCGCTGCATTTTCTTGATGGCGGTGTCAATGTGCGATTGTTCAATATTGCGGAGAGCTCGGAAAAGATTGTGGATACGACCGGGTTGACAGCGATAGGATTGTGTGATTTGCAGTGTCACTTTCATAATTTGGATATAGATTTTATTATTCGCTATATGTTTAATTTTACATCTTATCTCTATGCACAGGGAGAAGATATTATCAAAGACGGAGATACTATGGATGGTAGGAATTCACAGGAGCGATGGCGTTGTCAGCACGAGGATGCATTAGTTTCTCCAAGTCGGGTGGTTATTGATGTGAATCCCGGTGAATTTGGTGCTGGAAAGCGTGTTGAGCAAATGGAAGCATAAACAAGGCAGCAAAAGATTATGTGAGATTCAGCTGCTATGGTAATTGTTAGTAAGTCATGCTATTCTAATCCTATGGATCTAATTTTATTATGGATGAATGCTGTTTTTGGCCTTTG # Right flank : CGCCTATAAATAAGAAAAGACGAGTATATACCGCTCGTCTTTTTACAATTGTTAAAGGTTATTCCTGGGTTTAAAAAATAGCACAACATTGCTTCCGGTATTACATGATTCCTGATGACATAGAGATACGGAACATGCATACATAAGTAATCACACTATCCTCAGCTACAAATTTGTCTTTTTTTCCAGCTGCCGGCACGCCCATAAAAAGCTGAGGCTTCCCATAAGGATAAACAGCAGCAAAACAGCTGTCAGATTCCCTGTGTCTATTCTGCCATATAGAATCAGAGAACGCAATGCCTGGATCATATGGGTAAACGGATTGAGATTGATTGCAGTATGTAAGAAACCGGTAATACCTGTCATGGGAAACAGTGCATTGCTGAGAAAAAACACCGGAAGTACAATCGCGTTCATAACAGTTTCGTATATCACCTCATTCGGAAGGAGCATGCTGATTCCATAAGACAGCCCTGCCATAAAAAATGAGGTCAGAAAAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.16, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCCTCTCCTGAGACTAGCGTATCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTAGCCTCTCCTGAGGCTAGTGGATCTAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.70,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //