Array 1 19587-17016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELG010000010.1 Streptococcus dysgalactiae subsp. equisimilis strain T201 NODE_10_length_78106_cov_78.2398_ID_6018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 19586 32 100.0 33 ................................ AGATTAACTTAGGTGGTGGAAAAGAAAGTGTAG 19521 32 100.0 35 ................................ TTATTAGCTGTATTATTTTAGTCACATTTCCACTT 19454 32 100.0 36 ................................ AAGAAATTAAGGAAGTTGTTCTTAAAGAACATAATA 19386 32 100.0 36 ................................ ATGTGTTTTTAGGTGCTGTTGGAGATAGGCCAGTTC 19318 32 100.0 35 ................................ AAATTTTTTGAACTTTGTCCTATTAGTCCAATTAG 19251 32 100.0 34 ................................ GGTTTTGAATCCTCGCCGTTTGGTAATAATCTTT 19185 32 100.0 34 ................................ AAATGCTGCGTCATGTTGAGCAGTTGCTTCAGCT 19119 32 100.0 34 ................................ AAGCTTAATAGAGCTGGTGTTGCCGAATTGATGA 19053 32 100.0 35 ................................ TACTTGCTAAGAGCTGGTGGCTCTTACAAGGTCAG 18986 32 100.0 35 ................................ AAAAACTATCAGCTGATATTGAGTATTTAAAATCA 18919 32 100.0 33 ................................ TCTTTTTTTGGAGATTTAAATAAGTCCCAAAAA 18854 32 100.0 36 ................................ AGATGGTAAGGAAGGAGAAAAAGGGGACGATGGTCC 18786 32 100.0 35 ................................ AAGTTGGTGGACCAGCACGCTATGTCACTCGTGCG 18719 32 100.0 34 ................................ GAAGCTTGTTACGTTGATTCCCATTTTGTTTACC 18653 32 100.0 35 ................................ TTCACAAGCTATCAAAGAGCTAGCTGAGCCTACGT 18586 32 100.0 35 ................................ GCTTCGTGGGGGAATTGAAAAACCTGTTGCATGTT 18519 32 100.0 35 ................................ GACTAATAGCATTCATCTTTTTCTTGCCGAATTTG 18452 32 100.0 35 ................................ ATTGGTCTCACCTCCTTTTCTTACCTTATGATATT 18385 32 100.0 35 ................................ TAACTTAGCTCTTTGCTCGTCAATGGAATAGCCAA 18318 32 100.0 37 ................................ AAAAATACGACAAGTAGCTATACATCCGTTAGCAACG 18249 32 100.0 35 ................................ AAAATATTTATCAGGGTACCTGGCCATTAACTGCA 18182 32 100.0 33 ................................ AATGACTTTAAATTTAGCGAAGACTGGGAGAGT 18117 32 100.0 35 ................................ ATCTTTAAAGCTGGCTGCATGCAACTGGTAAATAC 18050 32 100.0 35 ................................ AAAATCGTTTGCTAGCGGTCCTTGGAAAACAGACT 17983 32 100.0 35 ................................ TAAGATTGAAGCTAAAACTGTTATTGATTGGGTTA 17916 32 100.0 35 ................................ AAATTTAACAAATGTCATCCAATGCGTAGTGCCTC 17849 32 100.0 35 ................................ CAAATTAAACATTGACGTACTGTCCAACCTATATC 17782 32 100.0 36 ................................ TTGTTATTTTGATAGTACTATAATAACATGAATATT 17714 32 100.0 34 ................................ CATCCATAAAGGCAAGGTTCGTGCTTCCAATGAT 17648 32 100.0 35 ................................ TAAAAAGTCGGCATCAACATTTTTAAAACTATTGT 17581 32 100.0 36 ................................ AATAATATCAACAGTCTCCAGTCTCCCATCAAGATT 17513 32 100.0 34 ................................ TTTATCTGTGCCGCGGTTATCATAGAATAAAAGC 17447 32 100.0 35 ................................ TAAAAAGTCGGCATCAACATTTTTAAAACTATTGT 17380 32 100.0 34 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATAC 17314 32 100.0 34 ................................ TTTTCTTACGATAACCTTAAAATTATCATTTTCG 17248 32 100.0 35 ................................ ACTGTATCGTATAACACATTCAAGAAAATTCGCAA 17181 32 100.0 35 ................................ AGGGTATGCGACAAGCACGAGTTATCCTCTTATAT 17114 32 100.0 35 ................................ TTTTCTAACGGAATTAGTACTTTATCTCTTAATGC 17047 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 39 32 99.8 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATTGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGTTTGGCGGGCAATGGCGAGGTTGTGGCAGTGTCTAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37601-36509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFELG010000003.1 Streptococcus dysgalactiae subsp. equisimilis strain T201 NODE_3_length_140889_cov_61.3949_ID_6096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37600 36 100.0 30 .................................... AACGTCAAGGTCCTTTTAACGACGTTTACA 37534 36 100.0 30 .................................... TGGGGCTATTTATACTGTTGCTGCTAATTG 37468 36 100.0 30 .................................... TTTTTGTTGTAAATAAATCAGCAGCTTTTG 37402 36 100.0 30 .................................... ATTTTTATCATTTGAGAGTGATATGTCAAT 37336 36 100.0 30 .................................... TAAAACAGGTTTAACTGCCTCTGGTTTAAC 37270 36 100.0 30 .................................... TAATTCTATCGCCAATAATTTCCACGCCGT 37204 36 100.0 30 .................................... CATTTTCATACCAACGTGGGTCGCTCGCAT 37138 36 100.0 30 .................................... GATTTTGGCAATTGTCATAGCATTATATGC 37072 36 100.0 30 .................................... CAAATTTTTTAACGACATTGATAAAAATGT 37006 36 100.0 30 .................................... GACTGTTTAGGAAGCGTCCAACCTCTTCTT 36940 36 100.0 30 .................................... TTGATGGTTATCTTGAGGAACAAAGACGAT 36874 36 100.0 30 .................................... AACTTGCTAAACTAAATCAAAGTCAACTTG 36808 36 100.0 30 .................................... ACACTTTTTTGCCACACAAGGACAGATAGC 36742 36 100.0 30 .................................... AATCAAGATTTTGCGACTTACGGCGTAAAT 36676 36 100.0 30 .................................... CCTTTAATTTAAAATGGCTTTGCCAGCAAA 36610 36 100.0 30 .................................... GACAAAGCGAATTGCTGAGTTGACGGGAAA 36544 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.7 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //