Array 1 721657-720788 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKS01000001.1 Listeria monocytogenes strain FSL L7-0115 NODE_1_length_891637_cov_109.915142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 721656 29 100.0 36 ............................. ACCTTTAACTTGCAGGGGCAAAATCATAAATCTAAC 721591 29 100.0 36 ............................. ATGAAAGACTTAAACGAATTGTGCATCCTTCAAAAA 721526 29 100.0 36 ............................. AGGAATGGCCGAAGAAGTGAAAAAATCTGTAGATGA 721461 29 100.0 35 ............................. AAGGAACTGTGCTTGTAGAATGCGGGCATCTCTTA 721397 29 100.0 36 ............................. GAATTCAGTCGCGTGTTATCCCAGACCGGAATACGT 721332 29 100.0 35 ............................. ATAGTTCCGGATTCACTTCCAAAATAGTTGATTCG 721268 29 100.0 36 ............................. AATTTTACATATCTAGCAATTAGCGGTTGAGTAGCA 721203 29 100.0 36 ............................. TTTTCCATCATTATCGCCCGCCAAGATAATTCGCTC 721138 29 100.0 35 ............................. GAATATGCCTCAATAAATTTTCCAACTTCGAGAAT 721074 29 100.0 34 ............................. GAGTTAGTTGGCCAGAACTGTATAGGAGCGGTAG 721011 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 720946 29 96.6 36 ..............A.............. ATACCTTTTGCAACTTTAAGCAACCGTGATTGGAGT 720881 29 93.1 37 ..C...........A.............. AATCGTCACGATGTGAAAGTCATTGATAGCGCGCCAC 720815 28 79.3 0 A.....A........CA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 97.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATATTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCAGGGATCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAATTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCCTTCATATACAACTCCACCACCATCCATCAAAATCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 5993-4967 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTKS01000003.1 Listeria monocytogenes strain FSL L7-0115 NODE_3_length_523802_cov_154.637802, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5992 36 100.0 30 .................................... ATTTGAAAAGCCTATTGAACAATGTGGTGA 5926 36 100.0 30 .................................... CTCGTGCAGTCTAAGTAAAACCGATGTTGT 5860 36 100.0 30 .................................... TTTAACTCAAAAGGAGTTAGGAATTGCTGT 5794 36 100.0 30 .................................... GATATAGTAGCTATGTAAAGTACAAAGAGG 5728 36 100.0 30 .................................... TTATACTTTGCGTTTTTCCGCTGCATGTTC 5662 36 100.0 30 .................................... CAACTTTCTAGCTTATCTACTTTTGCACGC 5596 36 100.0 30 .................................... AAATTAATGTTGAATGCCTTCGCTATACTT 5530 36 100.0 30 .................................... TTCAGCTGAAATCTTTGGCAAATTGATAGT 5464 36 100.0 30 .................................... TTTGTTTTTCTGCGGTTGTTATACTACACA 5398 36 100.0 30 .................................... TTTCTATTTTAATCAGCTTAGCACGCTCTT 5332 36 100.0 30 .................................... TTCGTTTAAGCCGATTTCTCTTGCTAACGC 5266 36 100.0 30 .................................... TTTTCCTCGATATTGAAACCCTTCCGCCCC 5200 36 100.0 30 .................................... ATGCAAATGTCGATTTCAGTTTTGTAAAGG 5134 36 100.0 30 .................................... TCCAGTATGGGATAACACGCGACTGAACTC 5068 36 100.0 30 .................................... CAAAGATGAGTCGAGTCAAGATTTAATCCA 5002 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAAAACTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCACTACAAAAGAAACCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCTATTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCAAATCCAAGAAACCTCGCCAGCCCAAATAGACCCAAAATACGTACAAAAAATCCTCCTGCTAAACAAATAAAACTCTCTCGTCCGCAGAGGTTTTTTTCTTTTCTTAAAAAAATAAACTCAAATTCCTTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //