Array 1 347653-350266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPBC01000012.1 Listeria monocytogenes strain FSL R8-7149 contig000012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347653 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 347719 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 347785 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 347851 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 347917 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 347983 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348049 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348115 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348182 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348248 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348314 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348380 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348446 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348512 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348578 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348644 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 348710 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 348776 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 348842 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 348908 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 348974 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 349040 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 349106 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349172 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349238 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349304 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349370 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349436 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349502 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349568 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349634 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 349700 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 349766 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 349832 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 349898 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 349964 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 350030 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 350096 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350162 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350228 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350253,350259,350262] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //