Array 1 30536-26802 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034665.1 Moraxella catarrhalis strain 142P87B1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30535 28 100.0 32 ............................ TTTATCTGACTAACCTGTATATTTAATATACC 30475 28 100.0 32 ............................ AATAAATATGAGATTGGTGCAAACACCAGCGA 30415 28 100.0 32 ............................ ACTGTGCATGATATTGATATTTTGGAGATATG 30355 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 30295 28 100.0 32 ............................ ATCAGAATTGAACAAATTGTTGGTAAGCAAAA 30235 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 30175 28 100.0 32 ............................ TTGAATGCATTGCCTAGGATGGTTCGCTCATC 30115 28 100.0 32 ............................ TAGAAAGCGTCCTAGCGTGCGTTATATTGCCG 30055 28 100.0 32 ............................ CACGGCTCTCATGAAAACACCGCTCCAGTCAT 29995 28 100.0 33 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTG 29934 28 100.0 33 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTTC 29873 28 100.0 32 ............................ GTAAACTTTACGCCCAATGTAGCGACTATTTT 29813 28 100.0 33 ............................ AGTATGGAATCGGCAACTACTCAGCTTGGCTAT 29752 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 29692 28 100.0 32 ............................ CAATCATTAATGCGTTGGCGGTGGCGTTTTTT 29632 28 100.0 32 ............................ AAAAACTGCAAGCACTTGGAATATTGATTTTC 29572 28 100.0 32 ............................ TTTATCACAATGCGTCAAACACAAGAAGCATT 29512 28 100.0 33 ............................ ATAAAAGTGCTGGTAATAGCGATGTAACAGCAG 29451 28 100.0 32 ............................ AAAAGCGTGCAAGTAGAATCTAATTTGCCCAA 29391 28 100.0 33 ............................ GCTGATGTTGCTTTCAATTGTGCCGATTTTGCC 29330 28 100.0 32 ............................ ATACATTGCCACCAATATCAGATAGACTTAAA 29270 28 100.0 32 ............................ TGTGCCAAGTCCTGGTACAAGCCCTGATACTT 29210 28 100.0 32 ............................ CATACAAAATTCATTAAAAATAAGCTCTTGTT 29150 28 100.0 32 ............................ TTTATTTTTCGATATTTTGTGCATTTTACACT 29090 28 100.0 33 ............................ GCCCAAGGGGTTTTTAGCACATACACGCCGTCA 29029 28 100.0 32 ............................ TTCGCCTGCGTTTTGACTTGCCTGTATTTTTG 28969 28 100.0 32 ............................ GCTCGGATAAGCTTTGGTTTGTCGTTGTTAGC 28909 28 100.0 32 ............................ AATGCTTGATACTGAATATTTTAGAGATTTTG 28849 28 100.0 32 ............................ TCTAGGCGTTGTTTTTGAAACACTTTGGCAAT 28789 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 28729 28 100.0 33 ............................ ATGTTCTCAGTGATAACACGCCCAACATCGATC 28668 28 100.0 32 ............................ ACCGACCCGCTGTTGATATTACTTTTTCAGCA 28608 28 100.0 32 ............................ GCATTGAGCATTGATTTTTTCACGCACTTTAG 28548 28 100.0 32 ............................ TCTTCACTGGTACGAATAAACATCCAGCTATC 28488 28 100.0 32 ............................ AGTGATAGGGTATTTTCCTGCCACTTTCAAAT 28428 28 100.0 32 ............................ CAGTGTACCACCACCAGTTAGACCATTACCTG 28368 28 100.0 34 ............................ GCACAAGAGATTATTTTGGTTCCGCCAAGCTCTG 28306 28 100.0 32 ............................ AATAGATTTTTTAAAAGTTTATTGGTTGTTTT 28246 28 100.0 32 ............................ ACCCAACCCATAGCGTTCGGCAGTGCATAGGT 28186 28 100.0 32 ............................ TCTTGACCACAGTTTACGCACGCCGATTGGCA 28126 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 28066 28 100.0 32 ............................ AATTCACGGATTGATGAGGTATGAGACCCCAC 28006 28 100.0 8 ............................ TACTAACT Deletion [27971] 27967 25 89.3 9 .........................--- GTCGCTTAG Deletion [27943] 27945 28 100.0 32 ............................ TTTTATCATAATTACTTGTTATTTCTTATTAT 27885 28 96.4 32 ...................A........ CACTCAATGTATAACACCGTCCGCACCAGTGA 27825 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 27765 28 100.0 32 ............................ CTGGCGGCTGGGAAGTTAAACAAACAGCTTAT 27705 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 27645 28 100.0 32 ............................ TATATCCGCAGAGCTTTAGCAGATAATGGTAG 27585 28 100.0 32 ............................ ACGTGTGAAAAAGCGTGTCACTGCATCATAAA 27525 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 27465 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 27405 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 27345 28 100.0 9 ............................ TTTTGCTGT Deletion [27309] 27308 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 27248 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 27188 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 27128 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 27068 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 27009 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 26949 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 26889 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 26829 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 64 28 99.8 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //