Array 1 292157-292428 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBL01000005.1 Salmonella enterica subsp. enterica serovar Poona strain PTVS026 NODE_5_length_320573_cov_61.1524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 292157 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 292218 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 292279 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 292340 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 292401 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307478-309278 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDBL01000005.1 Salmonella enterica subsp. enterica serovar Poona strain PTVS026 NODE_5_length_320573_cov_61.1524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 307478 29 100.0 32 ............................. AAATTGCTCGAAATTGTCGCCTATTGGGAAAT 307539 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 307600 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 307661 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 307722 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 307783 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 307844 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 307905 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 307966 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 308027 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 308089 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 308150 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 308211 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 308272 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 308333 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 308394 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 308455 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 308516 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 308577 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 308638 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 308699 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 308760 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 308821 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 308882 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 308943 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 309005 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 309066 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 309127 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 309188 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 309249 29 96.6 0 ............T................ | A [309276] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGCCAGGATATTTGGTCTTATCAGCAGCAGGCGGCGTTGGAATGGCTGGTGCGCCAGGGGGAGCAAAATGGCTTTACCCTACGCGAGGCGAGCGTTGATGCTTACCGGCAGCAGCAGATACGTCGCGAGAAATCCCGGCAGATGATTCAGTTTAGCAGCGTGGACTATACCGGCGTGCTGGTGATTAACGATCCCGCGCTTTTCCTGCAACGTCTGGCGCAGGGGTACGGTAAAAGCCGGGCGTTTGGCTGCGGAATGATGATGATCAAACCCGGAGATAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //