Array 1 13735-16128 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBY01000032.1 Limnothrix rosea IAM M-220 NIES-208_Scaffold_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 13735 36 94.4 38 ..A.T............................... TTATTAGATCAGTCAACAAAATATACTATCTAATCTTC 13809 36 100.0 36 .................................... CCCACTGCGTAATCTCCCCAGAAGGCGACGATTTTT 13881 36 100.0 35 .................................... TACGTGCACGTTTGGCAGAGTTCCATCTACTTTGG 13952 36 100.0 38 .................................... ACTAGACATGGACAGCGTTCGGATGTTGATTGAGAAAT 14026 36 100.0 35 .................................... ACGGGGGCATTAGCCCAACCGATATCAGTAGATGC 14097 36 100.0 40 .................................... TGCTTGTGGGGAGGGAAGCCGAACGTGTCTGAATTGCTAA 14173 36 100.0 37 .................................... CGAAATTGGGGGGACTGAAAATCCCTCAAATTAAAGA 14246 36 100.0 36 .................................... TATGCTAAAGGGCGTGACCAAGCCGCTCTTATTGAT 14318 36 100.0 37 .................................... ACCAATGATGATTCTCTGGGTATTGTTCTAGTATACG 14391 36 100.0 39 .................................... TCGAATCATCCAACCACACATAGATGATTTTTAAACAAT 14466 36 100.0 38 .................................... CTTGGGAGTTTGTCAACTTAGCTGTCCGGAACAAATTA 14540 36 100.0 39 .................................... AGCTAAAGCTTCCAATCCAGACGCAGTTAACCTAGCTAA 14615 36 100.0 36 .................................... TGTTACTCCTAAGTCTCTTAAGAACTTGGTATACCA 14687 36 100.0 35 .................................... GCCGTCGAGTTTCATGGTCTCATGCAAACCTATGC 14758 36 100.0 36 .................................... TCTTGCTGCACAAGCCGGTGCCAATTCTAAAGTTAA 14830 36 100.0 40 .................................... AAACATTGTAACTTCAAAGTAGGGGCTAACTCTGTATACT 14906 36 100.0 37 .................................... TTTATGGAAAGCCAGCTCATCTACTTCTACATGCAAT 14979 36 100.0 39 .................................... TGCGTAGAGGCTGGCTGCGAACCCTATCAAACCCAAATC 15054 36 100.0 35 .................................... CTTTCGGGGGGCTCGTCTTGCGGCTCGGTTTGGGC 15125 36 100.0 36 .................................... TTTAACGAAGGAAGCCACAACTTCGACATAAACCAC 15197 36 100.0 35 .................................... TATAAGAATACTTACGAAGAGTTGTCGCCTGACTT 15268 36 100.0 45 .................................... ATTTCGGCTTCTGAAGCCTCTTTTAACTGGACAACCCCATGCGGG 15349 36 100.0 45 .................................... AATGCCCTGAATCATTTGTACAAAAAGGGGGTATCTATGCTGTTG 15430 36 100.0 38 .................................... AACTATATCCTCATCGAAGATGGGATATTAAAGTATCA 15504 36 100.0 35 .................................... ACGGAAATTATCGAGATTGGAGAGTCTCCTCGAAA 15575 36 100.0 35 .................................... TCATTGGATATGAGGGAGGTGGCGCTTTGGGTGGA 15646 36 100.0 40 .................................... TCTTCCTGCAATCGAGGTTAACGCTGAGATTCTTGCTGAT 15722 36 100.0 43 .................................... TTCCTTTCTGGGACTTCTTTGAACCCACACATGAGCCCTCTCA 15801 36 100.0 38 .................................... TCTATGGCAGACATTAGCTTACTTTAAGTATACAGAGT 15875 36 100.0 36 .................................... TTGGATGCGCTTTGCATCTTGAACAACATGTAATAA 15947 36 100.0 36 .................................... CTGTGTTTAATCAAAGCACTGGTCACTACGAAGACA 16019 36 100.0 38 .................................... AGGGGACTTCCCCACTTATCGAGAGCTACCCTAGGCGA 16093 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 33 36 99.8 38 GTTTCCAATCTATTAACTTCTCAGGTGAAGAGAAGC # Left flank : CAAGGTCGACAGGAAGGTCTTGAGCAAGGTCTTGAGCAAGGTCTCGAACAAGGTCTTGGACGAGGTCGGCAGGAAGAGGCTTGTAAGTTAGTTTTGCGGTTTATCGATCGCCGTTTTCCTGATGCCCTCCCAGAGTTTGAGCCACAGGTACGGGAGTTATCTCTAGAGCAGTTAGAAATTCTCGGCGATCGCCTATTTGCGCTGGAGTCTAGCACTGACTTAGCAGCTTGTTTTCAAGACCTTCCACCAAATCAATTAGAGGAGTAGGACATCGCATATCGCCTTTTTCTCCTAGAATCTAGCACTGACTTAGAGGCTTGTTTTCAAGACTTGACGCACGATCGCCGTCCAGACTAATACGTGCCCTTTCTCCCTTGGGGGAGATGCCGAAGGCAGAGGGAGTTACAGGGAGTCGCGCCACCCACAAATGACTATAAAAATGATCGCCTTTTGATGGAATTCGGAGGGCGATCATTTTGTATTGAGTATTGCATTGATAA # Right flank : CCCTAGTCTGTCAAACCTTTTGCCGGAGCGAACTCCAGAAGCAGTTTGCGACCGATAGCCAAATCATAACGAAAACTCTCCAAACAAGTCAACAAAAACCCCCTGAAAGCGTTACAGCACTTAACATCGAGCGTTCAAATAAAAGAATAGCCATTTCAGCCATTATGGCGATCAATCGCTAAACAATCGTTGAAGAAGGCGGCATGAGCAACGGCGGTTCGCCCCAAATTTCCACCTGCCCCAAAGTATGACCCGAAATCGGATAAAACCGTAAACTATCCTGTTCTTCCTCCCGATAATATCGCCGCAAACGTTGTTTTAGTTCCCCATATTTTTTTACTGACAAACGACATTCAAACACAGAAAATTGCACCCGACACCCATAACCTTCTAACAAATCAGCAATCTTTTTACGACGCTTATTATCAGAAATATCATAGGCAACAAGATAAAACATTTGAGCAGGTATCAGGTATCAGGTATCAGAAGAAAATTAACGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCTATTAACTTCTCAGGTGAAGAGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 21124-15270 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBY01000050.1 Limnothrix rosea IAM M-220 NIES-208_Scaffold_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 21123 37 100.0 36 ..................................... CGGGTTGAACCCCCCATATCATTGAGAGCGTCTTCC 21050 37 100.0 34 ..................................... TTAAGAATGACTGACATGATTTGGGTGCAAGTTG 20979 37 100.0 34 ..................................... TTTGATTCGACCGAGGGGAATAAAACTGCATCCC 20908 37 100.0 36 ..................................... TGCAGCATTTCCTGATTAAGTTTGTGGTTTAGCTGC 20835 37 100.0 39 ..................................... AACTGTGACCTGCACTTTTGTGCCCGTGAGATACAGGGG 20759 37 100.0 35 ..................................... GCCAGCTCGGCATCGGTGGGGGTAGAACCCGCCAA 20687 37 100.0 34 ..................................... GGGGACTAACGCCGCACCAATTGCGCCGATCACA 20616 37 100.0 34 ..................................... ATTTGCCGTGTCCCCATCAATGTGGTGGACATGA 20545 37 100.0 35 ..................................... TGTACCTCCCTAGCCGTCGCACAGATATTGGCAAT 20473 37 100.0 40 ..................................... GAAATTTATCGAGGGGGCGGCAACATTGACCTTGTGGCGA 20396 37 100.0 37 ..................................... AATTCACCCTAGCCGATGCAAAAAAAGCAGGAACTCA 20322 37 100.0 37 ..................................... GCCTCAGCCTCAACATACTCGCCGTCTTCGTTTACCT 20248 37 100.0 35 ..................................... AATGCCACCGCTAGCCACGTGCCATAGATTGCCAT 20176 37 100.0 34 ..................................... CTCAAACTGCGCATTGTTGATGCGCCATTGACTA 20105 37 100.0 36 ..................................... GCTGACAAGAAGATGTACTTGTGAAAAATCCCGCAG 20032 37 100.0 35 ..................................... TTCGCCTTGTTGATATTGAAGAATTTTTAGTAGGA 19960 37 100.0 34 ..................................... CTGATTTAAGACGAAATACTGAAGAGCACGAAAT 19889 37 100.0 35 ..................................... TATCAGAAAACGACTAAGGGCATGAAAGAAGAGGA 19817 37 100.0 36 ..................................... CGTTGGCATACTTGCCCAAACAGCATCAATTCTTCG 19744 37 100.0 35 ..................................... AGTCGATCATCTACTGTGGCGATCGCCGAACTATT 19672 37 100.0 40 ..................................... CAGCATACTAATTTAGTGCCAATCTCTTCAAACCTATTGT 19595 37 100.0 35 ..................................... TCAGCTACAACAGGCGATCGCCCCTTCTCCAGCAG 19523 37 100.0 35 ..................................... ATAGGAACCCTTGAACACCTGCATAACTAAACCAG 19451 37 100.0 35 ..................................... TTGCCATTGATTCGGCAATACTGCTGGGGTCACCG 19379 37 100.0 35 ..................................... GTTTTGTCTTTGTTGCTGTAGTAATAAGCTTCTAT 19307 37 100.0 39 ..................................... TGTTTTTTGCGCGCTAATAATGCCCGTCGCCTCATAAAT 19231 37 100.0 37 ..................................... TGGAAAGCTCGACCACCCTGTACACCAAACAGAGATT 19157 37 100.0 37 ..................................... CTAGTATCATCGTTGCCACCACTAGAACGACGGGATT 19083 37 100.0 36 ..................................... AATGGCACGGGTGAAACAGTGACGATCGCCGTCAGC 19010 37 100.0 34 ..................................... ACTACTAAACTTTAGCAAAGGTCACAGCTACAAC 18939 37 100.0 39 ..................................... CAGTACTAATCTACTCTACACCTATCTAGTGCGTCAAGA 18863 37 100.0 37 ..................................... CAAAAATTTAGTACAAGTTCGATACCACCATTTAACA 18789 37 100.0 35 ..................................... TGGGGATTCTGAGCACCTTTAAGCGTGATGTGAAA 18717 37 100.0 34 ..................................... AAGAAAGCATAGGCTTCCGTTGCTTCGAGGACGA 18646 37 100.0 35 ..................................... GGCAATAAAAAAGCAGCCCGAAAGCTGCTAGAGGA 18574 37 100.0 36 ..................................... GTTGACTGGACAATTCAGGGCTTTCAGGATTACGAC 18501 37 100.0 34 ..................................... AGTGCAGCGCTATGGCTTCGCGGTGCGTGGCTCT 18430 37 100.0 35 ..................................... GAAGAAAAAGAAGCGATTTTATGGGCACTATCTGA 18358 37 100.0 36 ..................................... TTTGCGTTGTAGTTGGCGGTGACGGCGCGGCTATAG 18285 37 100.0 38 ..................................... CATTAAGTAGAGTGACTAAAACAGCTTCATCGTTGCTG 18210 37 100.0 38 ..................................... CAGTGCGTTCCTTTGCTGCGGCGTTGACATCATCCCAA 18135 37 100.0 34 ..................................... TGGGCAACGGGTTCTACGTAAAAGAGGGGCGTAG 18064 37 100.0 34 ..................................... CAAGAATCAATTCCTTATTACGATACAGGCGCAC 17993 37 100.0 36 ..................................... TTCAATCTTCGGACTTGCTAAGGGAGGTGCAGTTGA 17920 37 100.0 35 ..................................... GGGGGTTGATATCCCCAGCAAGATTCGTGACCTAA 17848 37 100.0 36 ..................................... GGAGGTTCCCATGATTCACAACCCCCATCCTCCCAT 17775 37 100.0 35 ..................................... GGGGGAGAATGGCGGCGATTCCGGATATTTTCATG 17703 37 100.0 37 ..................................... TAGTTTTTGGTAGTTGTTCCCGCCGATGTAAGTGATA 17629 37 100.0 35 ..................................... TGGATTTCGTAACCCATTTGTCACGGCGATCGCAC 17557 37 100.0 36 ..................................... TTGTTTGAGTTTTATGTCTGCATTAATTTCCGTAAT 17484 37 100.0 35 ..................................... ACTTTCGGTGCCCTGATTCAAGAAAGTAAAAATGT 17412 37 100.0 35 ..................................... TTTTTCAAGATACGTTTATCGTCGCATATTATTTT 17340 37 100.0 40 ..................................... TGGCTTGATAGCTTTAGATGCTGTGGCGATCGCCTGCTGT 17263 37 100.0 34 ..................................... AGCAATTCATTGCGCAGCTCGTTGTAAACATTTG 17192 37 100.0 38 ..................................... GCCTCAGTATTGGCATGGGGACGCACATCGCTAGCGCG 17117 37 100.0 34 ..................................... TTTTTTTGGCTAGCAAGTTGGAGCAAAAGGCAAA 17046 37 100.0 35 ..................................... GCGACGACATCTAGCGGAATTCCGATCCCATCCAA 16974 37 100.0 35 ..................................... TCCCAAGTGGACGCAACTCTGCCAAATGTTCACGT 16902 37 100.0 36 ..................................... CGCTACTTGAACTTCCCTGATTGACGATCCAACCAG 16829 37 100.0 36 ..................................... TTGAAAATGATCAAGATTTTAAAGGACTACAGCAAG 16756 37 100.0 34 ..................................... CAATCATAGCCAAGGATTTACCGGTTCCGAACTC 16685 37 100.0 32 ..................................... CTAGATTCGCGGTTGAAGTTGGCGATCGCCGC 16616 37 100.0 37 ..................................... TCTCACCATAATCAAAAATTGTGCCATCAAAATAATT 16542 37 100.0 37 ..................................... GATGAACCAGTAGCATAACTCAAAACAATAAGCAAAA 16468 37 100.0 33 ..................................... GGGAAAGACTCACCCGATATCGATGAGCTGCAA 16398 37 100.0 35 ..................................... ATAACTACCCTCGCAAAGGATTTTAAAGTGAAAGA 16326 37 100.0 35 ..................................... TTGAGATATTGCTCTTTTTTGAGAGGCAAATTCCA 16254 37 100.0 35 ..................................... CAAAATGATAGGAATCTCCGGCACAAGAAAACTAA 16182 37 100.0 35 ..................................... TCAAGCTGTGTTCGATGTTTACGGTTTTGGCACAT 16110 37 100.0 35 ..................................... GAAGGTTCTGCTCTATGCCGTTCGTATTTGTTCCT 16038 37 100.0 35 ..................................... TGGCAGGTTGTCTGAGTCTCTTTTCGAGTTGAAAA 15966 37 100.0 37 ..................................... GCAGTACGACGATCAGAGCAAAATCGTGGTGGTGCAG 15892 37 100.0 34 ..................................... AATTTTTCGAGTTTTACCAGAGTTCAGAGATTAG 15821 37 100.0 35 ..................................... TTTAGAGAGATATTGCACCTCTCTGGTCTTACCGA 15749 37 100.0 36 ..................................... TAGACCTGAATTTAAGCACTATAAGGGCTTAAATAA 15676 37 100.0 36 ..................................... CAATCGCTACGCCATCCCCCAAGTCGGCTACAGCAT 15603 37 100.0 35 ..................................... CTATCTCGGCGTGTCGTTTGGTCAACAACAATATA 15531 37 100.0 35 ..................................... GCCAATCTGTAAAGGATTCTCTGCTCAAATATACA 15459 37 100.0 35 ..................................... AATGCATTGTTTTTCGTTGGCATCATCAACGCTAA 15387 37 100.0 43 ..................................... TCGTTGTAATTGCGACGAATTACATTCTTATGAAATTCTACAG 15307 37 100.0 0 ..................................... | G [15274] ========== ====== ====== ====== ===================================== =========================================== ================== 81 37 100.0 36 CTCTCAAGCATCAAAATCCCTTTCTAGGGACTGAAAG # Left flank : CATGATCGAAGAAAAAGCAGCAGCAAAAGGGAGAGTATTTAAGCGGATCGACCCTAAATACACCAGCCAAACTTGCTCACAATGTGGTCATGTCGATGCAAAAAATAGAAAGAGTCAATCGGACTTTACCTGTGTGAAATGTGGTCACAGTGAAAATGCCGATGTCAATGCAGCGAAAAATATCAAACAGAAAGGCAAATTGTAATAAAATATATATTGCGATTAATCGCCTACCTGACTTTGATCGGGAACGTTAAGTCTGTGGAGATAAGATTTTGATCCTGTCTATGAAGCAGAAAGAAAAATTACATTTCATCTGGATAGGATCTATCCACAGTCCCCCTTTTTCGGGATTTTTGCCGAACCCCTAGCGAGACTTTCTAAAACACCTCTACGATCCGCATTCTTACGTTAGCGGAGCACCTAGAAAATTCAATATTCGCTAGGTTTGCCAAAAGTAGTCTACAAAGCCTTACGGTTCCAGTGATTTCAGCGGCGGT # Right flank : AGTATCGTTAAGAGGGTTGGCGATCGCCTCTGATAGATTGGAGCGGTCAATTAAATTATGAAAAAGTATTTACAAGCAAGCGACATTATCGATTGGCAGCATCCAGATATTCTTGCTCAAGCCAATAAATTAGCTGCTGGATTGGAGGATAAAACGGCGATCGCCAAAATCTGCTTCGAGTGGGTGCGGGACGAAATCCACCATAGTTTTGATTACCAAATGAATCCCATTACCTGCACAGCCTCAGACGTTCTCCACCACAAAACCGGATATTGTTTTGCCAAAAGCCATTTACTCGCAGCCCTACTCCGAGCAAATCAAATTCCGGCGGGGTTATGTTACCAGAGATTAAGCATCGATGACAAAGGCGCACCCTATAGCTTGCACGGCTTTAACGCCATCTTTTTAGCAGACTGCGGCTGGTATCGCGTAGATGCTAGGGGCAACAAAGCGAATATCGATGCTCAATTCACCCCACCCCATGAGCAGCTCGCTTTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAAGCATCAAAATCCCTTTCTAGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 95008-94370 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBY01000009.1 Limnothrix rosea IAM M-220 NIES-208_Scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 95007 35 100.0 38 ................................... GGCGTAAATATTAATATTTCCACCTGAAGTAATACCAG 94934 35 100.0 41 ................................... CTGAGTCTAGTGCTGCCGTACCCGAATCACCTGGATCAAGT 94858 35 97.1 42 ............A...................... GGAAAGCTTGGCAAGACGAGTGGCCTTTACAAGTGCAACAAC 94781 35 97.1 39 ............A...................... CTCTGAGATCCGGAAATGGTAAACTTAAAAGTTCCCCAT 94707 35 100.0 43 ................................... GGGGATGGAAAGACCGAGAACAGCAAAGAGAGTGAGTTTAGAA 94629 35 100.0 37 ................................... AGCTGGAGCAACCACAGGAGCTGGAGCAACCACAGGA 94557 35 100.0 44 ................................... TAAGGCAAAGCAACTTCAGCCAGTCTGACTCCGCCACCTTCACC 94478 35 97.1 39 ............A...................... TGCTGCACTAACTCAGTCTCAATAATGATCGGCTCCTCA 94404 35 94.3 0 ............A.....................T | ========== ====== ====== ====== =================================== ============================================ ================== 9 35 98.4 40 CTTTCCTAACCCTCACCCCGCAAGGGGACTGAAAC # Left flank : GGGATTTAGGGGGATCTACGTTTCGGCACAAACGAAAAATATAATTTTGTCTTTCCTTGGGAAAGTTTTTCCTACGAAGAATAGCTTTGGACAGATTACGAAACCACCAAAAAAACTCAAGTCCCCCTTCCAAAGGTAAAAATAGTTTTGTCCTTCCTTGGGGAAGGTGCCGAAGGCGGAAGGGGTTTCGATTAAGTCACGCAACATTGAAAAGACTTCAAAAGGTCTGAGGCAAAGTTTTCTAACTAATTCACAAATGCTGCTCCACAACCAAAAATCTTTGGTAAGCTATGGACAACTCAGCCGAAACCGACACAGGTCGGTGGATCGCTGAAACCCCTATTCTTTCGTTGACCTCCGTCGGTCGCCTACTGTGTAAGGGTTCTAGCCTCTTTTTTTCTTTGTTTTTATGGATTTCTGGCTCAATTTTCACTCAATTTTCGACCTATGTCGGATCAGGGGGTTGAAAGCCAGTCACAGCAAGGGCTAAAAATGGAGCC # Right flank : CTCGTCTCAGGCGATCGCCACAAAAGCTAAAAATAGTTGCGTAACTTAAAGAGGATCCCCCTAAATCCCCCTTTGAAAGGGGGACTTTTCTTGAGAACTCACCTCATGAGGAGACTCAGAAAATAAAATGCGCTTGATTACTAGAGAATGACTGGAAAATGCCTTTTTTAATTTCAGTCCCCCAAAGAGTACCGAAATTGAAAATTTTGAACTAAAAACAATGAATATTTCGTCAGAAAAAAGTAAGAAAATCTAAAAGTTGTTTTTTTAAACGATCGCCCTACAAGACGACCCAAAGCAAAAAATATTAATCTTGACGACTATAGGGGAAACGTTGCTCTGGCGATCGCTCTAAAAGAAACGCCTTCATACCTAGTTTTACCGCCCCCTCATAATCCTCTAGCTGACTATCGCCAATGTGCCACGCTTGGGATGGTAAACAATTGTGTTTATCGAGGGCGGACAAAAACATCTTGCTGTCAGGTTTCGCAGCTCCGACA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTAACCCTCACCCCGCAAGGGGACTGAAAC # Alternate repeat : CTTTCCTAACCCACACCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.80,-7.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 108622-110285 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBY01000009.1 Limnothrix rosea IAM M-220 NIES-208_Scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================== ================== 108622 35 97.1 41 .............A..................... GATTTTGGCACTGCTCTTGTTGCTGTGCATCAATTAGCTTT 108698 35 97.1 36 .............A..................... ACAAGCTCTCCAAGTACTGATTTTGAATACCTGAGC 108769 35 97.1 39 .............A..................... GCATTTCACCGTTTTCGGTAATTGTGTGGCCACCTTGAA 108843 35 97.1 36 .............A..................... TGCAGCTAAAGACGCGGTAACGGCTAGACCTAGAGC 108914 35 97.1 36 .............A..................... CATACTCGATTACCACTTCTGCTTTGTTTGCAGCTT 108985 35 100.0 38 ................................... CCCGTTCCGTTGCCAGCACCGTCCTCGAAATAGCAATT 109058 35 100.0 36 ................................... CTGAGCTGCTCCAAGAAGATTACAAAAGATTACAAG 109129 35 100.0 40 ................................... ATATAAAATACTTCACGCCATAATAACGACTGTCTTCATC 109204 35 100.0 36 ................................... TTTAAGCCCACAACTTGGTTTGATAATTTAATACCC 109275 35 100.0 40 ................................... TGCTCTTGCAATAGGTGCATAGCTAACAAGAGTCATGATC 109350 35 100.0 37 ................................... ATCCATCAAGTTTTGAGCAGTAGTTAGATCCACACCC 109422 35 100.0 40 ................................... TTAGCAACATGTCTGCATTGCGTTCAGCGTGGTTCATGTC 109497 35 100.0 50 ................................... TCCAGATAATATCACTTTTTTGTGCGCAACTGAAAGATGTGGTGGCAACT 109582 35 100.0 39 ................................... TTTAGAATGGTGTTTAACAAGACTTCAGAAATAGCAATT 109656 35 100.0 39 ................................... GGTGATTGTCATCACCCGTTGGGCGTTCGTTAGTTTCAG 109730 35 100.0 43 ................................... ATACTCACCTTGGAAAGTGAGAGAAGCACCGTTACCCATGTCG 109808 35 100.0 35 ................................... AGCTAGACCACTGCTTAAAGTAGTTAGAGTTTCTG 109878 35 100.0 42 ................................... CACCCTTTCGTGCGAGCCGCCATGAGAACAAGATTGTAAATC 109955 35 100.0 40 ................................... TTGTATATAGTCCGGCACCTGTTTGTCGTGCGGAATAATC 110030 35 100.0 39 ................................... ACGCAGCGATACCTACAGAGATTCCTAAACCAATCAAAA 110104 35 100.0 41 ................................... CCTTCCCATTTGCAACCATCATAGCGCTCTCGTTTTTTGAC 110180 35 100.0 36 ................................... CCGCCATTACCGCCAGTAGCAGTTTGGTCACCGACG 110251 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ================================================== ================== 23 35 99.2 39 CTTTCCTAACCCACACCCCGCAAGGGGACTGAAAC # Left flank : ATGAGCTGTTGCGGGAGTTGTCGGATGAACCTCTCGGTGAGCTTTATGGGGAATACAAGGACAGGTTATTAAATAAGCTCCAGTTTCGGAATTTTTCGATCCTTGCCCACGGTATGAATCCTGTCACCCACGCTGAGTATGGGGATTTTTGGGAGAGTCTGGGGGAATTTATGCAGCAGGGTATTGGGCGGCTCACGGCGGGGTCTAGTTTTTCTGCGTCGCAGTTTCCTCGGAGGTTGTCTCTGCCGTTGTCTTTTTGATGTTGCGCATCGGAAAATCTTTGGTAAACTGAAGGCAACTTGGCTCTGCTGCCATAGGTAGGCAGATCGCTGAAACCCCCATTCTTTCGTTGACCTATGGCAAATGCTGGTACAGTAAGGGTTCTAGCCATTAAAATTTTCGATTTTGATGATTTTTGGGCACGATTTTCGCTTAATTTTCGACCTATGGCAAATCGTGGGGTTGAAAGCCAGTCACAGCAAGGGCTCAAAAATGGGTCT # Right flank : TTGAGACTCCCCCCTTTTCTAAGGGGGGCTAGGGGGGATTCTCCATAAACTCCGCTAAAAACAGAGCCTAGACAAGCCAAAACATAGTTCCGTAACCTACTGACACCCCTTCCGCCCTTCGGGCACCTTCCCCAAGGAAGGACAAAAACTATCTTTATCTTTTGTTTGAAAGGGGGACTTTTTTGACTTACTCCTCAAGGGGACTAACCTATGTGTCCCAATGGTTAGTCATGGTCGCATCCCGATGACGCTCCTACATAAATGACGGCGACGTAGGAGTTGTTCGCAAACCTCAAATTTTAATCGACGAAAAAATACCTTTTTCAATTTCAGTCCCCCAAAGAGTACCGAAATTGAAAATTCTGAACTGAGAACGACAGATTATTAAGGAGAAAAAAGAAATAAATACTAAAGGTTGTTTCCGCGAGGCTTTGTGAGGCGATCGCCCTTCAGACATTGAGAAAGCCTGCGGGGAAGACCTGTAAAGTTATAGAGACCTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTAACCCACACCCCGCAAGGGGACTGAAAC # Alternate repeat : CTTTCCTAACCCAAACCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 115042-113022 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBY01000009.1 Limnothrix rosea IAM M-220 NIES-208_Scaffold_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 115041 35 100.0 42 ................................... GCCCAGTTCATTCGCAAGGTCACCAACTGTAGCGTTGGGATT 114964 35 100.0 35 ................................... GTTAGGTTGCTTAGGTTCCACGACATCGCATTACA 114894 35 100.0 38 ................................... CAGAAATAATCCCTAGTGAAAATAGCATGAATAGAAGG 114821 35 100.0 43 ................................... GTCACCAACAATGTTAGTGTTGTCGATGTCAGAGTCAAAACAC 114743 35 100.0 42 ................................... ACCCCTATTTTTGCAATAAGTGGTATGCCAGCGTTGCCGCTT 114666 35 100.0 36 ................................... TGTCCAAGAACTTTAAAGCCAACATCTGTTGTGCCG 114595 35 100.0 37 ................................... TTTGATATCTCGTGGATCATAGGATATTTTTGTTCCC 114523 35 100.0 42 ................................... AATAATAACAGCTAGAACTGTGTTGTAGTCAATAGACATGGT 114446 35 100.0 36 ................................... GATGCGCTTACAGGCATACCGAAAACCAAACCAAAT 114375 35 100.0 38 ................................... CGACGCTTTTTTGAACGGGAACAAACTGATCATCTGTA 114302 35 100.0 35 ................................... ACAACATGCTCCAACAGACATGGATGGTCGTTCAG 114232 35 100.0 38 ................................... AGCTTCTTCCAGTAACCCACTTCTCCTTGCGGGAGAAT 114159 35 100.0 35 ................................... ACAACATGCTCCAACAGACATGGATGGTCGTTCAG 114089 35 100.0 38 ................................... AGCTTCTTCCAGTAACCCACTTCTCCTTGCGGGAGAAT 114016 35 100.0 38 ................................... ATGCAATACCATTCGGAGGCAGTGCAGTAGCACCAAAG 113943 35 100.0 40 ................................... TAATTAATTTAGATGATTCAGCTTTTATTCTAATAAAATC 113868 35 100.0 37 ................................... AGGCTAAGGAAACACTCGTCGTACCTCCTTTACGACA 113796 35 100.0 36 ................................... CCTGCCCCCGATTCAACATCGTCAGTGATAACGGGA 113725 35 100.0 39 ................................... ATTCAACGGATTCAACGGATTCGACAATCTGAATTTCAA 113651 35 100.0 37 ................................... AGATCAACATTGTTTTCTTGAGGGTCATTTTCGTACC 113579 35 100.0 37 ................................... TGCGATCGTTCAGCTCGTCTTCAAAGTTTTCCAAACT 113507 35 100.0 40 ................................... TTATTTGTTTATTTTTGTTTAAATACAGTTTTGTGAAACC 113432 35 100.0 44 ................................... AGTTTAATACTTCGTGGTAAAGAGCCTTCATAGTTAGAAAGATC 113353 35 100.0 40 ................................... AATAAGATTGCGTAATAGTATTAGCAACCTTTAAATCTAC 113278 35 100.0 41 ................................... CTTCATAATGGTCGACAGATCCGGTGAATAGGCTTTTTCCT 113202 35 97.1 38 .........................A......... CATGGAGATGTTTTGCGTAAATTGTTAAACAATTACCC 113129 35 100.0 38 ................................... ACGCGCCCACTATATTTGACGATTAAGCCTGCTGGTGT 113056 35 94.3 0 .................................CA | ========== ====== ====== ====== =================================== ============================================ ================== 28 35 99.7 39 CTTTCCTAACCCACACCCCGCAAGGGGACTGAAAC # Left flank : TCCGGATAATAAGCGGCGAACGAAGCTAGCGACTTTTTTGGAGGGTTATGGGCGGCGAGTGCAAAAGAGTGTGTTTGAGTGTTTTCTGACGCGGCAGGAAATGCAAGCGTTGCACTGTGCTGTGGAGCAGCGTATTGATGTGACGGAGGATAATGTCCGATTTTATTGGATTCCTGCGGACGCTTTGTCAAGGGCTTTGACTTTAGGCAGCTCTCCGCCTGAGCCACCACCAGATTTTTATATTATCTAATGTAAAAATGCCGTCGCGTGGAGAAATTTTTAGGTAAACTTAGCGTAATTCGGCTGTGCTGCCATAGGTAGGCAGATCGCTGAAACCCCTATTCTTTCGTTGACCTATGGCAAATGCTTGTACAGCAAGGGTTCTAGCCGTTGTTTTTTTCGATTTTGATGATTTTTGGGTGCGATTTTCGCTTGATTTTCGACCTATGGCAAATCACGGGGTTGAAAGTCAGTCACAGCAAGGGCTCAAAAATGGGTCT # Right flank : GGCAAGGTAATGTGTGTTCCGATGATTGGTCGTGGGCGCATCTCGATGTCGCCCTTACATAAATGGTGATATTAGGGTTTTTCGCAAGATATTTTTCAGCAATGAAAAAATCCCTTTTTGAATTTCAGTCCCCCAAAGGATACCGAAATCTTGAATTCTGCCCTCGAAAAGTGAGAGATGAAGGAAAGAAAAAAGAAGAAAATCTAAAGATTACTTTTGTTGAGCAAGTATTGGCCCACGAGTTTCAGCCTTAGTTGAGCAGAAAAAGTCAAAGCCACTGAACTTGTCTCCTAAAATTAAAAAACGACCCGACACTAGAATGATGACCAAGCAACAAGTGCTCGACCTTTTAGCTGAAAATAAAGCCCTACTTCAAGAACAGTACGGCGTAACAAAATTAGCCTTGTTTGGTTCTACTGCAAGGGATACCGCCACCGACAAAAGTGATGTAGACATTTTGATTAGCTTTGAAGGCAAAGCCACCGCGAAAAGATATTTTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTAACCCACACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 6758-225 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBY01000014.1 Limnothrix rosea IAM M-220 NIES-208_Scaffold_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================================== ================== 6757 37 100.0 91 ..................................... TATTTGACTGGGCGATCACAAACTCCCCCCTTCAAACTAGCAATCCCCATCATCGAAAATGCTTGGGCGTTCTCACGGGTGGGGGTGGCGA 6629 37 100.0 41 ..................................... GAGAGACGATCAAACTGCAATCAGAATTATCAATTTTCCGG 6551 37 100.0 35 ..................................... CTGTAAAAGTTCTGCCTTCGTCTAGATCTTTTGAC 6479 37 100.0 35 ..................................... TCAGCAGTATTGGTAGTCCTTCACTCAGCCCCTAG 6407 37 100.0 35 ..................................... TCTACTACCCTCGCAAGGGACTAAAACAAGTGAAA 6335 37 100.0 35 ..................................... GCTACCCAATCTGAAGACAAAGATTGAAACAACAG 6263 37 100.0 35 ..................................... GTAATCTGAAAAAGCAACAAATAAAAAGCCCCACC 6191 37 100.0 38 ..................................... TCAACGGCAGTTAATAGCGGCGCAGCCCCCTGCGACAA 6116 37 100.0 36 ..................................... TTCCCGTTGGGTCATGGGCTCAACGTCTGCTTTGAC 6043 37 100.0 36 ..................................... AATTATGAATAAAAGTTGTTTTCAATCAACTGAAAA 5970 37 100.0 35 ..................................... TCTTAGGGTATTTGCGTCGTTATCTTCCTAAACTT 5898 37 100.0 32 ..................................... AAGTAACACCCCCCTTCAGTGCCAACAAACAG 5829 37 100.0 35 ..................................... TCAAGTGCACCCCCAGTCTCAAATCGCTTGGAATA 5757 37 100.0 35 ..................................... AAGCCAACAGTAAACATCCCCCTTCGTAAGGGTGA 5685 37 100.0 35 ..................................... GAATCACCTGCTATTAAATATGTCTGTGACTTCTC 5613 37 100.0 36 ..................................... ATTCACGCTAAGCAGGTAGGTATCGTTGAACTTCAG 5540 37 100.0 35 ..................................... CCAGCCATCGGCTTTGTCTCTGGCAAAAAGCTCGA 5468 37 100.0 34 ..................................... AATCCAGACAAAATCAATCCACCGGGGCTAAACC 5397 37 100.0 36 ..................................... ACAGCTAATGCCTTGAAGATACGAGGCCTAGCCACT 5324 37 100.0 36 ..................................... TTGAGTTTTTCCCAAACCTAAAATGCGTAATACTTC 5251 37 100.0 34 ..................................... CCCTACCCTAATCTTCCGAGAATTGCCACGGTCA 5180 37 100.0 35 ..................................... ATTTGTTCGAATGTCATTTGATTTTCTCCAATCTT 5108 37 100.0 36 ..................................... TCGCTGGGCGCTACCCGCATAATGCAGAGTGCAAGT 5035 37 100.0 34 ..................................... ACGAATGTGCGAATTAGGCCATCACCCAAGTCCA 4964 37 100.0 35 ..................................... CAAAACCTTAAGGATGGCACTATACTCAGCTTCTT 4892 37 100.0 35 ..................................... AAATTCTCATCGGGAACAATAATCAACGAATGACT 4820 37 100.0 35 ..................................... CAGCCTTCGGTCTTTGATCATATTACTCGATTAAG 4748 37 100.0 35 ..................................... GGATCTACATGTGTCCCAACAAGAAAAATAGCAAC 4676 37 100.0 35 ..................................... AGACAAGGAACCCTTCCATTTAGATGTTGATGAGT 4604 37 100.0 36 ..................................... TGTTGTGCTGGTGTTGATGGCAAAGATTGAGCGATT 4531 37 100.0 35 ..................................... ACTACCTCAAAGACCACCACCAACCCATAAGTTAA 4459 37 100.0 42 ..................................... CAGAGCAAACCGCCGTCGTGCAGGTGATAGGCATCGTGCCAA 4380 37 100.0 35 ..................................... ATTGCAGAGTACGAATTGCACACGGTTGGCGGAGA 4308 37 100.0 34 ..................................... AAGCCACGCTACAGCAGAAAAAACAGCGCCGCTA 4237 37 100.0 36 ..................................... TACTCATTGGCAAGGCGGCGATGCCTCAGGAATATT 4164 37 100.0 35 ..................................... GGTAGTCGTCGGGTCTTGTAGCCCACCGCCTGTTG 4092 37 100.0 34 ..................................... CTTTTATTGTGTCCTTAAACTCTAGAACTCGCTG 4021 37 100.0 36 ..................................... TCGCTGGGCGCTACCCGCATAATGCAGAGTGCAAGT 3948 37 100.0 34 ..................................... ACGAATGTGCGAATTAGGCCATCACCCAAGTCCA 3877 37 100.0 35 ..................................... CAAAACCTTAAGGATGGCACTATACTCAGCTTCTT 3805 37 100.0 35 ..................................... AAATTCTCATCGGGAACAATAATCAACGAATGACT 3733 37 100.0 35 ..................................... CAGCCTTCGGTCTTTGATCATATTACTCGATTAAG 3661 37 100.0 35 ..................................... GGATCTACATGTGTCCCAACAAGAAAAATAGCAAC 3589 37 100.0 35 ..................................... AGACAAGGAACCCTTCCATTTAGATGTTGATGAGT 3517 37 100.0 36 ..................................... TGTTGTGCTGGTGTTGATGGCAAAGATTGAGCGATT 3444 37 100.0 35 ..................................... ACTACCTCAAAGACCACCACCAACCCATAAGTTAA 3372 37 100.0 42 ..................................... CAGAGCAAACCGCCGTCGTGCAGGTGATAGGCATCGTGCCAA 3293 37 100.0 35 ..................................... ATTGCAGAGTACGAATTGCACACGGTTGGCGGAGA 3221 37 100.0 34 ..................................... AAGCCACGCTACAGCAGAAAAAACAGCGCCGCTA 3150 37 100.0 36 ..................................... TACTCATTGGCAAGGCGGCGATGCCTCAGGAATATT 3077 37 100.0 35 ..................................... GGTAGTCGTCGGGTCTTGTAGCCCACCGCCTGTTG 3005 37 100.0 34 ..................................... CTTTTATTGTGTCCTTAAACTCTAGAACTCGCTG 2934 37 100.0 36 ..................................... CTGTGATGTTGGCGATCGCCCCTCCGCCCCTATCTG 2861 37 100.0 35 ..................................... TATTCGCGGGGGCATTGGTGGGCTTATGCAAAGAA 2789 37 100.0 34 ..................................... CAGAATACGAACTCTACCACCTTTTTCTTCCCAT 2718 37 100.0 35 ..................................... AAATTCACTAAAATCGGCCTCAAAAGCTTCAATAG 2646 37 100.0 36 ..................................... AAGATTTTGACCCTAAAATTCATGTTGAAGGTGACG 2573 37 100.0 34 ..................................... CTCACACCCATAGTTATTCGACCCTCTGTGGAAA 2502 37 100.0 35 ..................................... GCTACTTTAAAAGCCCTTAAAAAAGAAAACGGGTA 2430 37 100.0 36 ..................................... GACAGAAACGCCGCCATGCATTGTAATAAATATCCC 2357 37 100.0 35 ..................................... AGCGCCATTGATATTAAATTCTCTAGGTTCGAGCG 2285 37 100.0 37 ..................................... TCGGCTTCGGACGTGGCATCGGTGATCGCCGCTTCAA 2211 37 100.0 34 ..................................... ATGCGATTTAGAGCTGATACGAATTTACTCTTAG 2140 37 100.0 35 ..................................... GGATTTTTCTTGTGTCAACTATCTTCACTCTTCTC 2068 37 100.0 35 ..................................... AGCGCCATTGATATTAAATTCTCTAGGTTCGAGCG 1996 37 100.0 36 ..................................... TGAGTATTTATCGCTGTTTCCAGTTCAGCTTTCAAT 1923 37 100.0 34 ..................................... CAGATCGGCAAAGGGTTGGCTGGATCTTGGGTAT 1852 37 97.3 36 .......G............................. ATTTTACAGAAGCAGATGATGGAACGAAGGTACTAC 1779 37 100.0 36 ..................................... TTGGATAGGGGCGGGCAACTCATTAAAACCGACCAA 1706 37 100.0 34 ..................................... GTATCGTCAAAATTCCGGACGGAAAGACCGCCAG 1635 37 100.0 36 ..................................... CATCTTGGCGATCGCCATCGAGGTCACGCTTTAAAG 1562 37 100.0 36 ..................................... GGGCTAAATTGGGTAGGGGGTCTACCCAAAATGAGA 1489 37 100.0 35 ..................................... TGCTCAAATTCAGAAAGCTTCCCACACGTTTCGGT 1417 37 100.0 35 ..................................... GAGGAGCTAGAAAAATTTATTGATGACCTTGCTAA 1345 37 100.0 34 ..................................... CAGAGAGGATGTGCCCCGCCTCGGTAAACGCTTC 1274 37 100.0 37 ..................................... ATATCACCAACAACGGCTAACGATTCTCCAGTAGCCT 1200 37 100.0 34 ..................................... TTACCCCAATCCCAGTCCCCTCAACGGCTACGAC 1129 37 100.0 37 ..................................... AATGAAGAAACCAAGGAAAGTTATGGAAGACGTAAAA 1055 37 100.0 34 ..................................... TAGATCAGTATTGTTTACGATTGTGGGCATTGTT 984 37 100.0 35 ..................................... GCTTCTTTCTCTTTCTCTTGGGCGATCGCCACTTC 912 37 100.0 34 ..................................... CTAAGAGTTGAGATTTATGATTTTGGCTCAAAAG 841 37 100.0 36 ..................................... CAGTCGTTAAACATTTGGCGATCGCCTTCAGAAATT 768 37 100.0 34 ..................................... TCTTATTAGCCCACCAATGCCTTTTAGCCCCCAC 697 37 100.0 36 ..................................... CCAGAAGGTCTAGTAATCAAAGGGAAGAACGTAGGG 624 37 100.0 37 ..................................... TGGGGAAAGTGCCACGCCTAACGACATTTACGCATGC 550 37 100.0 34 ..................................... CTCAGCGCGCTGAGAACAACCATGGCCTTAGAAG 479 37 100.0 37 ..................................... TTGACGTTTGGGACGATGGCCTGTTGCTGTTCCCATC 405 37 100.0 34 ..................................... AACTATTGGGTCAAATTAGGCAAAGCAGGGCATA 334 37 100.0 36 ..................................... ATAGCGGGTATCAGGGTGCTTTGCACTGCTTGTATT 261 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================================================================== ================== 90 37 100.0 36 CTTTCGATCTATCAAATCCCGATCACGGGACTGAAAC # Left flank : AAACCCTGTAGAGTTGGGCAACCCGGACGCTCTGATTTCTCTTTCGATCTATCAAATCCCGATCACGGGACTGAAACACGGCAGTCATCCCAACCATGCATGCGGCGACTTTCGATCTATCAAATCCCGATCACGGGACTGAAACTCCTTATGGAATGCCTAGGGAAAGGAGAACGGCAAATAGACAAAACGGAGCTGGATCTAGCCCTCGTTTCTATATCTAATTATCTCGCATTGCTGGAGGCATCCAGTGAGTCTTAATCTTGCCGTTGAGCTTCGCGCCGCCTTTGCTCTTCCTTTAGAGCCTCAAGGTCATCACTCAATTCCTCCGTGGTGTTTTCAACCTCAACAGAGGTTCCGGATGGTCGCGTTGTTGACCACAGAAACACCCCAGTAAGCACGATGGCGATCGCTGTCATTCCAGCAACAATTTTCCCTTTCTTCGTTTTTAAAAACTGCATTGTTTTCTCCGCAGACTGACACTGCCAATTATGAATCAA # Right flank : CTTCTATTTGCTAAGGTGGGCGATCGCATGGTTATTTTTCCCATCGTTCAGCATCTCGCCTTAATTTACTGATCTCCTGATGCATTTTTTTCTTCTCTGCTAATAGCTTCTTCTGTTTGTTCGCCAAACTAATTATCTGAGCGTGTTTTTTGTCGTCATCCTTTCGCAATCAGGGTAATCGCATCAAAATAAAAGACAGGAAAGGGGTAAAGTAAAGGAGCTTAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCGATCTATCAAATCCCGATCACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 7113-15530 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRBY01000014.1 Limnothrix rosea IAM M-220 NIES-208_Scaffold_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================== ================== 7113 37 100.0 31 ..................................... TCGCCGCATGCATGGTTGGGATGACTGCCGT 7181 37 100.0 36 ..................................... AGAAATCAGAGCGTCCGGGTTGCCCAACTCTACAGG 7254 37 100.0 35 ..................................... GCAGATTAAGTATTGATGCCACCTTGTTTGTTGGT 7326 37 100.0 37 ..................................... CCTCAATATAAGTTTCACTTAGTCGATGCAAATTCTC 7400 37 100.0 34 ..................................... TCTTCTCGGTACAAGTGCAGTTTCGCAAAAGTAA 7471 37 100.0 36 ..................................... CTTCTCAAAGTCATTTGTTGCTGGGGTTTGAATCCT 7544 37 100.0 34 ..................................... GATAGCACGCAGGGTCGCCGAAGTCCGAAGAAAA 7615 37 100.0 34 ..................................... ACAAACTTGTTAAAACATGGGGCACGGCTGATCC 7686 37 100.0 35 ..................................... AAGCTACCGACCCACCAATCAAACCTCGGAATCGT 7758 37 100.0 35 ..................................... AGAGGATAGCGCCGGGTGCCCTCTCGTTCATGTCG 7830 37 100.0 36 ..................................... CTTCCGTAGCCTGCGCAGCCTCCATCGTTTTAGCAA 7903 37 100.0 34 ..................................... CTGGCACAATGATGGGTTGGTTTTACTTGGGAGA 7974 37 100.0 35 ..................................... TTGAATGTGGGAATGACCCCAACGGCTGGGGGCTG 8046 37 100.0 36 ..................................... GAACTTATTAAGGACATTGAATCGGCATCGTACCCC 8119 37 100.0 35 ..................................... GCTAATTTGCAGCGGCACTGGTAGCACTAAAAACT 8191 37 100.0 34 ..................................... AACAATCGAAGGTTACCTAAAGTTTTATTTAGCT 8262 37 100.0 35 ..................................... CAGCACTACAGCAGCAGAAGCCCAAGCGTACGCCC 8334 37 100.0 36 ..................................... AGCGCGCTATTACAATGGAATCAGCTTTTTGGGTGC 8407 37 100.0 35 ..................................... GAGACCGCCTACAGCTACCCCCTGTGTCGGCTAGA 8479 37 100.0 38 ..................................... TTAACAGTTTTGCTCATATATTTTGCCAAGTAAGCTGA 8554 37 100.0 36 ..................................... TTTGTTCATGCGAATAACGAACAGATTATTGAATAT 8627 37 100.0 36 ..................................... TCTCCCAGCACCGACTTCTGTTGATGGGTCGTTGTT 8700 37 100.0 34 ..................................... TCTTTGTATCTAAAATTGTGAGCCTGCCCCAAAA 8771 37 100.0 34 ..................................... TCTATGTTTTCCTTCTCTATCAGTCGTGGGAACA 8842 37 100.0 36 ..................................... CTCAATATCTCATCTACTATAGCCTTCATTTTTGTT 8915 37 100.0 35 ..................................... TCTTAAATTTCCAAGTAGCTGTGTAAGATTCCCCA 8987 37 100.0 36 ..................................... GCCAGATAGCAACGGTGAGGTTTACTGGAAGGTAGA 9060 37 100.0 35 ..................................... TGACCAACGGCGACTGAGTTCTGTTTCGCTAACTC 9132 37 100.0 35 ..................................... ACGCATGGGCAGCAGAGCGACGGTTAGAAGCAAAA 9204 37 100.0 33 ..................................... ATAGCACGCAGGGTCGCCGAAGTCCGAAGAAAA 9274 37 100.0 36 ..................................... GACTATTGCCTCAGCCCCCATCCTCTCCGAAGTCCC 9347 37 100.0 35 ..................................... TTAGAAATGTTTTTAATCATTGATTTAGAGACCGT 9419 37 100.0 37 ..................................... TCTCGCGTTAAATCATTGGTTAAAATCCCTTTTAAGT 9493 37 100.0 35 ..................................... TGTTATGTCAGATAGGTTTGCTGTAGAAAGCAGAT 9565 37 100.0 36 ..................................... GCAATTTTAGCCAATCACCACGAACGCAAGGGACTA 9638 37 100.0 35 ..................................... GATCCGGAATTGGTGGATGTGCCATAAAACCTCGT 9710 37 100.0 34 ..................................... TCTCTGTAGCAGGCGGTGGCGGCAATTACATCGT 9781 37 100.0 35 ..................................... AGAGCTTTGACAGCTTGGCGGTGGAAGCTTTTTAT 9853 37 100.0 78 ..................................... TGGCGCAATTAACAACGACAAGGTAGCGGCTGGTGCTGGCATTGTCACCACAAAATTAGCGGACGGCGCAGAATTTAT 9968 37 100.0 35 ..................................... ATTGTTTATAGCCTCGGCTATGGCGACGCAGCATT 10040 37 100.0 34 ..................................... TCACGACTCAAAGAGCACCAGTCGTTAATTAATC 10111 37 100.0 35 ..................................... TTGGCAGCGGCATACAATTCGGCGCGGGAATTTGG 10183 37 100.0 33 ..................................... ATGCCAGCACTGAAACGTTCTCTTTCAGGTACA 10253 37 100.0 37 ..................................... CGTTGTCAATGGTACGAAGTGACAGAGGGGTTTGAAC 10327 37 100.0 35 ..................................... AATTGTGGATGTGCCTTGGCTTATAGAGACTTTTA 10399 37 100.0 36 ..................................... TTTCTCTCGGTTGTTCGTAAATCTAGCCGTTTCATT 10472 37 100.0 35 ..................................... TGATTATAATGGCGGGAAAGGATGCAACCATGCAG 10544 37 100.0 36 ..................................... CGTTGAGGTAAACGTGCTCGCTCCCAGAAGTGGGTG 10617 37 100.0 42 ..................................... CAACTGGAGCCACAAAAATAAGCCTAAGAGGGGCAGTGGGTG 10696 37 100.0 34 ..................................... CGGGACGGCTTCTCCGTATCTCAAGAAAGGCTTT 10767 37 100.0 34 ..................................... ACATTGCCTCTAAAGTTAGTGATTGCTCTTCTGT 10838 37 100.0 41 ..................................... ATGGAGGCTGCGCAGGCTACGGAAGGGGCGGCATTAGGTAT 10916 37 100.0 34 ..................................... TGTTCAGAGCGTCTATTACTCGTTGTTCTTGCGT 10987 37 100.0 35 ..................................... GAAAGTTTTGGGTCGCGCACCGCGTCATTAGAGAT 11059 37 100.0 35 ..................................... ACTAACGGGAACTTTGAATAATTCGGGGCCATTTA 11131 37 100.0 35 ..................................... CAAGCCCCGGTCGCCAATTGATTGCACAGGGATTG 11203 37 100.0 36 ..................................... TTTTGTTTCAACCCCCAAGTCACCAGCCGTAATCAT 11276 37 100.0 36 ..................................... TTGTTCAGGAAACACAGGTGGTTGTTGATGGGCGAT 11349 37 100.0 38 ..................................... CCTGAAAGAGGTTGAGTCCTTGAATGAATCTGACAAAA 11424 37 100.0 39 ..................................... CAGGTTCCGGAGATAGATTTGCCAGATGGCGATCGCCTA 11500 37 100.0 35 ..................................... TGTTAAACAATTTGGACGGTTAAATTGTCAGACCA 11572 37 100.0 33 ..................................... CCTAGGCGACTTGGCTATGTTGGCGGCATATTG 11642 37 100.0 35 ..................................... CTGTGGGAATCCCGGCGATCGGCACAGCGCCAATA 11714 37 100.0 35 ..................................... ATTCGAGCATTGTTTCAAGTGCTCCAGCTAACGTG 11786 37 100.0 34 ..................................... TTTTCACCGAGGCCGTAGTTGCCAACTGGAATTC 11857 37 100.0 34 ..................................... GCTGAAAATCTAGCGCAGCGCTACGCGGGTCTGT 11928 37 100.0 35 ..................................... AATCGAATCTCTAAAGGATGAGCGCTCGGAGGCTA 12000 37 100.0 36 ..................................... CGACTATTGTTAAGTTGTTGGCGATCGCTAATAACT 12073 37 100.0 35 ..................................... CATAAGCTTTGTGCCACTTTTCAGGGAAGCGATCA 12145 37 100.0 36 ..................................... GAGAGAGAACAGCCTACAGACTGCAATTAAGGGCAT 12218 37 100.0 45 ..................................... TCCGCCACAGTCATCTGCCCACACTGCCGCGTTGAAAATTTCTTT 12300 37 100.0 36 ..................................... TTAGTGATTGTTGCAGTTGTTGTGGTCATATTTTTA 12373 37 100.0 35 ..................................... TTTTCTTTCAGGTACACAGACGGTCTCCCCTTCTG 12445 37 100.0 37 ..................................... TCATCTACGCTGGCGATCGCCGTCTCAAATGCTTTTA 12519 37 100.0 34 ..................................... AAGAGCTTTGCGCGGGTTAGCCCCCAGCCAATTT 12590 37 100.0 34 ..................................... GTTGCAGATTTGCGGGGGGAAATTCAACATGCAC 12661 37 100.0 36 ..................................... CCAACAGGATCGAATCGAAAGGCTAGAACAGCAACT 12734 37 100.0 34 ..................................... TAGGCGCAAATTGACAATCGCCATCACTTCATTG 12805 37 100.0 33 ..................................... CTGACCCAAATGACGAGGTAAGCATTCATCGCA 12875 37 100.0 43 ..................................... AAGTTTTTGGGGAGGTGATTGCTGATTTAATACAACTTTCGAT 12955 37 100.0 38 ..................................... CCGAAGTTGAGCGTATCTGGAATGATATTGCTGAGATG 13030 37 100.0 35 ..................................... TCCTGACGGCTCCATTTGTCGAGGTCAAAGCCCGT 13102 37 100.0 36 ..................................... CCGCTTCCGACGATTGCGATCAACCGACAAGCCATT 13175 37 100.0 35 ..................................... GAGACTTCGGGACGTTTGCCTGTGGCAGTCTGTTT 13247 37 100.0 38 ..................................... CTCGGATGGTTTGGGAGCTTAGTGGTGCGTGATGTCGC 13322 37 100.0 36 ..................................... ATTGCGGTGGTCTTTGAACGCCTCTAAAAATGTCGC 13395 37 100.0 36 ..................................... GCTGAAATCTCGCGATCTAGTTCGATGATTTTGGTG 13468 37 100.0 33 ..................................... GAAGATTTTTACGTTCAACAACATCGCCTTTTA 13538 37 100.0 34 ..................................... CCAACTCTTCAGGCGTGTAGACAGGGGCGGAGAA 13609 37 100.0 36 ..................................... TCAACAAGATTGTTCCGCTAGTGCCTGATCATCATC 13682 37 100.0 35 ..................................... TCAGGTTAATCTTCATTTATGCTTCCCAACCATCA 13754 37 100.0 37 ..................................... TCTTGCTCCAAGAAAAGAGTGAAGCTGCCGAACTTAT 13828 37 100.0 35 ..................................... ATGGGTGGGTAGAATATTGAACAGAAGTTGTACGG 13900 37 100.0 34 ..................................... TTGCTGGTTTGCGCCGGGGGGCTATTGCTGACAA 13971 37 100.0 36 ..................................... CAGCAACATTCCAAAACGAATAATTTCAAGCGATAT 14044 37 100.0 34 ..................................... TTCCCCCATTCGTCGAACTGAGGGGCAAGCCACA 14115 37 100.0 33 ..................................... TTGATTTGCAGACATTCGGGAAAAGTGGCAATG 14185 37 100.0 35 ..................................... CCCCACGGCGATCGCCACCCAATCAGGAACGGTCA 14257 37 100.0 42 ..................................... TATGGCTTTATCTAAATCGGTATTCGGAGAGGAGGGGAAAGT 14336 37 100.0 36 ..................................... AGTGGTGCAAGCTCACTCATAAGCAATGGCTTAAAA 14409 37 100.0 35 ..................................... ATGGCAGTGAAGAAGGGAAAGAATGGCACAAACTT 14481 37 100.0 35 ..................................... TCTTCCATCGCATCAATTTCTCGCTCTATCCCCTC 14553 37 100.0 36 ..................................... ATGAACTTGATTAAAAACATCTTCTTGCTAACAATG 14626 37 100.0 34 ..................................... TCTGGGATGATGCCGAGGGGGATTTTGACGATGA 14697 37 100.0 36 ..................................... CTGGCAAGATGTTTGGTTATCTTCTGAGCCTCCCAC 14770 37 100.0 34 ..................................... CAGAATAAATCCCGCGTCAATCAGCTCAGAATTT 14841 37 100.0 37 ..................................... AGGTCAAGAACTGCCAAAAGCTGTGGAAAACTTTTTT 14915 37 100.0 34 ..................................... CTGACGCTGTGGAACGTTTAGGGGAGGCACTACA 14986 37 100.0 35 ..................................... AGGGAATTAAATTTGTTGACCTGCTTATCGTCAAG 15058 37 100.0 35 ..................................... TCGAGCTTGATGGTGGTGCTGGTCGTCGCCTCTAC 15130 37 100.0 37 ..................................... CTGCCAACAAAGCTTTTTCTACAGCCTCTATAGCAGC 15204 37 100.0 35 ..................................... TTGGCAGGGACGGCGATCACCCTTACTGATGATGG 15276 37 100.0 35 ..................................... TCTGCGGCGTTTAATGCGACCATCGGCTCCCTTGT 15348 37 100.0 35 ..................................... TTTCGTCGACAACTTGAGTATCGTCTAAATAAATT 15420 37 100.0 37 ..................................... TCTCGGTAATCTTCGAGGGGGAATTGCAACGTGCCTG 15494 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================== ================== 116 37 100.0 36 GTTTCAGTCCCGTGATCGGGATTTGATAGATCGAAAG # Left flank : ATTTGATAGATCGAAAGTCGCCACCCCCACCCGTGAGAACGCCCAAGCATTTTCGATGATGGGGATTGCTAGTTTGAAGGGGGGAGTTTGTGATCGCCCAGTCAAATAGTTTCAGTCCCGTGATCGGGATTTGATAGATCGAAAGTTGATTCATAATTGGCAGTGTCAGTCTGCGGAGAAAACAATGCAGTTTTTAAAAACGAAGAAAGGGAAAATTGTTGCTGGAATGACAGCGATCGCCATCGTGCTTACTGGGGTGTTTCTGTGGTCAACAACGCGACCATCCGGAACCTCTGTTGAGGTTGAAAACACCACGGAGGAATTGAGTGATGACCTTGAGGCTCTAAAGGAAGAGCAAAGGCGGCGCGAAGCTCAACGGCAAGATTAAGACTCACTGGATGCCTCCAGCAATGCGAGATAATTAGATATAGAAACGAGGGCTAGATCCAGCTCCGTTTTGTCTATTTGCCGTTCTCCTTTCCCTAGGCATTCCATAAGGA # Right flank : GACTGTTGTCTAGATCTGTTGATATGGTTGGGCTTGATCGATATTTTTGGCGAACCAGAAGATTCTAGCTTGAATTTGCAGCGATCGCCACAAAGATAGCCTGTTCCATATCCGCGAAAAGTATTGATTTATCAAGGTTCTGGAGATTTTGGCAAAGCCTCTAGGGTTTTTGACCTCGCTATAGGTTTGCCAATTTAATTTTAGAGGAACTTTAGAGAATAATACTACCAGGCTCTTCAGGTTTTGTTGTGCCATAGGCGATCGCCTTTTTGACAGCAGTAGCATCGAGAACATAAATACAGACAGCATCTTCATCGGGTTTAATTAACTTTTCGATAGTGGTTTGTAGCTGGGCAAATTGCTTTGCTGTGAGAAAACATTCAAAGACACTAAATTGTTTCCACCTACCATAACCTGATAACAAATCAAACAATCTTTTACGACGCTTATCACCCGCTTTTGTAGAAGGCAAATCGTAGATTACAAGATACAATAATTTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTGATCGGGATTTGATAGATCGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //