Array 1 42081-41869 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBW01000002.1 Pectobacterium carotovorum subsp. carotovorum PCCS1 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42080 29 100.0 32 ............................. CGATTGATGATCGACTCGCAGAAATCGCCGCC 42019 29 93.1 32 ..G..........T............... TAGGAGTTATCGCTATCATGAATATCAGTACG 41958 29 93.1 32 ..G.....T.................... GTAATCAAATTCCCCGGACCTGAGTCGGGGCA 41897 29 89.7 0 ............T..........G...G. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTATCTCGCACACCTGTGGTATTTCGTTGATTAGTTCAAAGATAATGCGGTAATCCCCAACCCGTAGCCGATATTGTTTACCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTCAGCTCGCCCACTTTTTCTTTGATTCGTTTTCGATATCTGGTGTCAATGGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAATCTTAAGCATGCATCCCTCAAACGAAATCCTTCCCTGATATAAGTTAATTATAAGACAATTTAAGGGTTATGTTCATTTTTCTTATTTTTTTGTTGATGATTATGCTGTTCCTTCAGGGACAAATCGCGGGGATTTGACGTTGGATCAGAGCCATATAC # Right flank : TTATACCCCTTGTTGCATGTTGGTCTACATGTTCCCCGCATGGGCCAAATCCCGTTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCGTTTTTGCATTCACCGTCACGGTGATGCGCGATGCCCATCATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCTGAGAAAGCGGCACTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCCGTTCCTGTTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCCGCCGAGCTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAGGGTTCCGCGCTACTGGGTTTTATCTCGTCGCCGCGCGAAAATGTCGGCAGTGTGCCGCCTTCCAATGTCTTTCAGCCTATTAATG # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44752-42952 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOBW01000002.1 Pectobacterium carotovorum subsp. carotovorum PCCS1 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44751 29 96.6 32 ..........T.................. TTTTCTTTCATCGTTAACGCTTCATCACGCGT 44690 29 100.0 32 ............................. GGTAACGCCTGATTCAACAACCTCAAATCTTC 44629 29 100.0 32 ............................. GCGTGCAATTTATTACTATTGGCACCACTACA 44568 29 100.0 32 ............................. TCAATTAGCAAGGTTCAGCTTAAATTATACTC 44507 29 100.0 32 ............................. AGAAATTCACGGTTGGCGGTGTTTCGATGGCG 44446 29 100.0 32 ............................. TTTGCCCACCTATCGCACGATTGTAGAATGTC 44385 29 100.0 32 ............................. AATACTTTTAGGAGCTACTGAGCATATCGATT 44324 29 100.0 32 ............................. CAGGCCTGAGCACGTTGGCCTGATTATCGGCG 44263 29 100.0 32 ............................. CGACACTCTTGCGATAGTTAATACCGTTGGCT 44202 29 100.0 32 ............................. CCGATAAACTCCCTCATCTGTGTGCACTTCGC 44141 29 100.0 32 ............................. AGCCTACACTCCAAAATGTGCTTTCAGACGAT 44080 29 100.0 32 ............................. GATCGAGAACAACCCCGCCAGGTGGCGTTACA 44019 29 100.0 32 ............................. GTCGGGAGCGTAGCGATTTCCTTCAACAAAGC 43958 29 100.0 32 ............................. CAGCACGATAAATGCTGGTGGCCAGCAGCAAC 43897 29 100.0 32 ............................. GCCCATACCAGTAGGTTTTCCCCCGGAAGCAC 43836 29 100.0 32 ............................. ACGAGCATACGGGCTATTGGGAAGAACCTGAC 43775 29 100.0 32 ............................. TGCCATGTCGTGTTGAGGGTAGTAACCCGCTG 43714 29 96.6 33 ............................A GCTGATTTCGTATTAATTACTGGTGAACTGTCA 43652 29 96.6 32 ..A.......................... GACATTTACAATAACGGGGTCTTTATTTGGTC 43591 29 100.0 32 ............................. CGCCCCAAATGCCGGAACGCCAGCAGCGTGAT 43530 29 100.0 32 ............................. TCCAGCATCTGTTTCTGAGGTCATGAAGAAGA 43469 29 100.0 32 ............................. ACTTCCAGCAGACGGACGGGACGTGGAATAAA 43408 29 100.0 32 ............................. GACGGCACGGTCACGTCAACGTGGCATGAATA 43347 29 100.0 32 ............................. CCTCGCGCAATGGTTGAAGTGAATATGGCTGC 43286 29 96.6 32 ..A.......................... GGCAATTAATATCGCAGGGCTGAATCTTACTA 43225 29 100.0 32 ............................. GACGAAAACTACCACTGGATCGCCATAGTAGA 43164 29 89.7 32 ..A.........T..........G..... TAGGGCATAACAGAGGCACTAAAGATGCTGCT 43103 29 93.1 33 .............G.A............. TGGCACCCCACGGGATGCCTATATCTGCACAAC 43041 29 96.6 32 ............T................ TCCTATATAGACACGACAGCGGCCAGCACGCT 42980 29 93.1 0 .............T..............C | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTGTTGTCTGCGGGTGGAATTACGCCTCCGCTACCGCCGGATGATGCACAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGCGACAGCGGCCACCGGGGGCAGGGTTAAATGAGTATGCTGGTGGTTGTGACGGAGAATGTCCCACTGCGTTTACGTGGCAGATTGGCGGTGTGGTTACTGGAAGTCCGTGCGGGAGTGTATGTCGGTGATACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATTGAACTGGCGGAGCAGGGCAACGTTGTGATGGCGTGGGCGACCAATACGGAGTCTGGTTTTGAGTTCCAAACGTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGACGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAGTCCGTGGAAGCGGCTAAAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGTTTTTCTCGGGTGCGTTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCTGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAAAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCGTGAGGAATAGAGACGTCATCCTCTGCGCCATGATCGTAGGGAATGCTCTCATAGAGGGCGGGATCGTCAGCATTTTCAATAAGTTTCTGATATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGATGTGGTGTAAAGAAGGATGCGCTTTCCTTCTTAGTATGTCGTCGTTGTCCTACGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //