Array 1 467-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMM01000014.1 Methanocaldococcus villosus KIN24-T80 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 466 37 91.9 36 TG......................G............ TCTCATAATAAATGGAGAAGCTTATAAAATCAGCAT 393 37 100.0 37 ..................................... AACGAACAAATTACTGTTTTGGTGTGGTTCAATCCAA 319 37 97.3 37 ........................G............ CTAATTTATCATTAAAATATGCACTTAACAAGATAAT 245 37 100.0 35 ..................................... TTATAATGAAAACAAAAGCAAGAGGTGAAAGGATG 173 37 100.0 35 ..................................... GAAGATGAGAACACCATCACCCTCACAAGACTCAA 101 37 97.3 0 ........................G............ | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 97.8 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : GGATAGAATAAGAGTGTGTAAGCTTGTTAATAAATATGGAATAGAATTATCCTCTGGGTTATTAATAGGGGTTGGAGAGAGTTACGAAGATAGGGTAAAACATCTATTTTATCTAAAAAATGAACTTGAAGTAGGAGAAATACCAATAATGGGATTTAATCCATATAAAGGCACACCAATGGAAAATTTTCCAAGATGTTCAGCTTTAGAACAGGCTAAAACAATTGCTATAACAAGATTGATCTTTCCAAATATAAGAATAACCTCTCCCTCTCCAACTATTGGACCTGAATTAATCTATTTCTCATTATTAGCAGGGGCAAGTAATATAGCTACAGTAATTCCCAAAAATTACCCAAGAATAGTTAAAGGAGTAGGTAATCCAAAAGTAGCTAATTTAGATGATACAGTTAAAATAATAGAATCTCTAGGCCTAAAACCTAAGTTAGATTATAATAAATATTACATGTATTTAAAAAGTCAGAAATAGTTTTTTTATA # Right flank : CCCTATGCAACCACTAACTATATTCGCCAAAACTCCTATATAAATCTTTCTTTTTCAACAAGATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : GTTTCCATCCTTGTTTTAATGGATGAGCGATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 5690-6085 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMM01000025.1 Methanocaldococcus villosus KIN24-T80 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 5690 37 100.0 34 ..................................... TCGAGATTTCAGAATTTGTTAGTGATGGAGCAGT 5761 37 100.0 36 ..................................... CTGATTTAGGAAACATTGGATTTATTTATGATTTTT 5834 37 100.0 36 ..................................... AGGGCTTAGGGTTTACAAGGAAATTTTGAGAATGAA 5907 37 100.0 35 ..................................... GGGTTCAACTTGGTGTTAGAGGATACAATCAGTGT 5979 37 100.0 33 ..................................... GAGACAGTATAAAGGAAATGATTACTGATATAA 6049 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : CTACTCTTTCATGAGCCTGTAATCTTGTCATTCCAGGTCCTGATATCCCTAATGTGACAGGTTTATCATATTGAACAGAAAGATCTGCTATCTTTCTTGCTGCATTATGGACAACTATCTCATCATGCTCTGTTTCACCCTCAATAACACATCCAATAGCAACTACAGCATCAACATCATCTTTTTCTAGAAGTTTTTTTATGGCTAATGGCATGTCAAAAACTCCTGGAACATAGAGTTTATATTTTATCTCAGCTCCTAAAAATTCTGCATGCTCTTCAGCTAGTTTTTCCATCATATATGTTATATCTCTATTGAACTCTGCAACAACCAAAGCTAATTTAACCATAATGTTATCACCTAATTTAATTTTTATAAAAAATTCTTTATTTTTTATTTAAAAACTTTTTTTATGAATAAAAACTTAAATATAATATAATTTCAATGAACTTCTATTCAAAAATAGAAGTCTTCTTTTTCATCCTTGTTAGTTTTCATCA # Right flank : CCTACGCAACTACTAACTATATTCACTAAAACTCCTATATAAATCTTTCTTTTTCAACAAGATTTTTCTTACTACCCAATTATTAAAACCTTTATAAAGTTAAGAAAGATTATGCAAATTATTTATAAATATAACGCACAACTGTATTATAAAATATAAACAATTATAACTTATCTAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 584-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMM01000028.1 Methanocaldococcus villosus KIN24-T80 contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 583 37 97.3 37 ........................G............ TAATACAGATTAAAGACGGATATTTTATAGTGAATGG 509 37 97.3 34 ........................G............ GATAACTTAATTAGAAAAATGAAGGAATTATTTG 438 37 100.0 34 ..................................... ATGATTTAAAGGACTGGGGATTATTCGGAGAATT 367 37 100.0 35 ..................................... TTGTTAGACATATATAATAAATTAATGAGCAAAAT 295 37 100.0 37 ..................................... ACCTTTCTTCCTAAATTGCTAAGGTTTAACTCATTGT 221 37 100.0 36 ..................................... TGGAAAGTGTGGATACTATATAAATAGAGAAGGCTA 148 37 100.0 37 ..................................... TTGGGATTTAAATGTCAAATCAAAAATGTTTTTAGAA 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 99.3 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : TTTTTGGCATTTCATCTACACCCTTTATAAAATATAAAATAAACTTCAAAAAAAGGATATGAGTTTTTTAGAATATCTCTTTATATATTCATGAACCTAATTATTATATCATAACCCAATAGGAGGTGAAATCATGGTAGGTCCAAGAAAACCAAAAAATCCAAAAAATTAATGGTAATTACATAAGGTCATGAAATTCTTTCAGGGTTATTCCTTATTAAATTTCCTTCTATTTCTTTTTAATAATATTTATCCCTTTTTTAAATTTATGTTGTTTCCATAAACCATAAGGATTTTTTAAGCTAGATATACAACTTTGTTTCCATCCTTGTTATAATCGCCCCATTGATTGGTTTTGACATTAAAAACACCATCAATCTTTTTTCTTCTCGCCTGTTATTATACCACCAATCGCTCCAACTATTGCAGATAACACAAGTATCCAATCCTTCCAACCATCTGGATAATACACCAAAACAAATATTGTGATTATTACCGCA # Right flank : CCCTATGCAACTACTAATTATATTCGCCAAAACTCCTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : GTTTCCATCCTTGTTTTAATGGATGAGCGATTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 11585-11849 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMM01000041.1 Methanocaldococcus villosus KIN24-T80 contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 11585 36 100.0 38 .................................... TAAAGAGTAGGTGATATTATGGCGGCACAAGGGGGAAA 11659 36 97.2 47 ..........................C......... GTTCAGAATATACAAGTATTGATAGCGTGGATTTAACCGATTATTAG 11742 36 100.0 36 .................................... TGGATAAGTATAATATTAGTTTATGGGAATATAGAG 11814 36 94.4 0 .......................A..C......... | ========== ====== ====== ====== ==================================== =============================================== ================== 4 36 97.9 41 TTTCCATCCTTGTTTTAATGGATGAGTGATTCAAAC # Left flank : GGGTGTTTTATGGTATAGAGAGTGGAAGTGATAAGATATTAAAAGATATGAAAAAAGGAACCAATAGAGAAAAAAATTTATATGCTATACAGTTGGCTAAAGAAATGGGTGTAAAAGTTGCTGGTAGTTTTATTGTAGCTTATCCAACAGAGAGTGAAAAAGATTATTTGCTTACTAAAGACTTTATTGCTGAAGCTGAGTTAGATGATATTTTTGTTTCTATAGCTGAACCTATTCCAAAAACTGAGATGTGTGATTTAATATTAGATATGAATAAAGAAGATTTACTATTATATAAAACATATAACCATAATTTGAGTGTAGCAGAGTTCAGATGCTATGATCTTTTAGTATATGGGGAAATGTTTAAACCTAACCCAAGACTTTCTCCTTATTTATATAAAATATATCTAAATGAAGCTAAACAACAAGGAGAAGACATTAGAAAAATTATAGATATTATTTTCAAATATAAGGATATAATAAAATAATTACATAGG # Right flank : CCTATGCAACCACTAATTATATTCGCCAAAACTCCTATATAAACCTTTCTTTTTCAACAAGATTTTTCTTACTACCCAATTATTAAAACCTTTA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCATCCTTGTTTTAATGGATGAGTGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 579-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMM01000069.1 Methanocaldococcus villosus KIN24-T80 contig_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 578 37 100.0 35 ..................................... CTTTTGCCCCGGCACCTTGGGAGGTGGAGCTAGGC 506 37 100.0 34 ..................................... GAAATATTAGAGGAAAAAGAGATAGTAATGAATA 435 37 100.0 37 ..................................... TCAGCACCGCAGGGATGAAAAAAATAAAAAAACAAGA 361 37 100.0 38 ..................................... GGCGGGGTGAAAAAATGGAGTGGTTAAATGAGGAAATA 286 37 100.0 35 ..................................... GTTGCAATACAGCCCCACTTTCGGGGGCTGGGAAG 214 37 100.0 35 ..................................... CAAACAAGGGAAGATCCCAGACGATAGTGAACTAA 142 37 100.0 37 ..................................... ACTTAGAATACGCATTAATCGAGATCAGAAAAGAAGA 68 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : TTCTTCTAATTTTAATATTTTTTAAACTCTTCCTCATCCATATAACCTAAAAGCCCATTCTTCATAGCCATTTTACATTTCAAACTACATGGAATAAAACCAGAAGTTATAACTATAGCATAAGTATTTATCTCTTTTGCCTCTTTTAAATGTTCTCTATCAATAGCTATTCTAAAATCCTCTGAAAATGATTTTATGCAACATAATGGATAGTTTAATAATTTACCTATTTCATAGTCATCTAACCTTCTATACACTCCTAATTCAAAAGAAATTACTGGATCAAGAGCAGGTCTAACCTTTGGTTTATATTTATTAACAATTTCTATTTGTGTTTTTAACCTGTTTATTAAATACTCAAATTTTATATCATCCATATTTTTTATATTTTCCTCTAATTTTTTAAATTCTGATTTTCCTTCTCTCATTTGTAAAATCTTTTTTAAAATATCCTCCATCATATTAAATCCTTTCTGTTTG # Right flank : CCCTATGCAACTACTAACTATATTCGCCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 6523-6777 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMM01000042.1 Methanocaldococcus villosus KIN24-T80 contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 6523 35 97.1 39 ................................G.. TATATGAAGATAAAGAGCTGTGGGCTAAGTTTCATATGT 6597 35 100.0 38 ................................... AGGTGACAACATGGAGCATGTGAAGAACACAAACGTGT 6670 35 97.1 38 ......................A............ CCAACTGATGAGTGAATGGGAAAAGAAGGCGAGAGAGT 6743 35 94.3 0 ......................A.......T.... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 97.1 39 TTCCATCCTTGTTTTAATGGATGAGCGATTCAAAC # Left flank : ATTTTTTCTTCCCCCATAAGCAGTTCTTAATCTTGAGACCCCTACAGGACCATTTATATATACTTTTCTTAATATAGATGCACACCTTATATACCACCAATCATCCTGTTGAGGCCTTCTCTCTCTACTAACTCCTGTTTTTACAAACTTAGCCCATTCTGGTTCTTTTAAACCAATTTCTTTTAATTTTTCAGCAGTTTTTTGTATTAGTTTATCTGCAGGAACATCATATACAGTAACCATTATTCCACCTTTTAGAAATTTTTGAAATAAAAAAAGAGATTAATGATATTTATATTTTATTACATCAAAAAATAATTGGAGCCGGGGGTGGGATTTGAACCCACGTAAAGCGGATCTGCAGTCCGCCGCCTAGCCCCTAGACTACCCCGCTCTATAGCCAAGGTATTTCTATAGTTATATGTGGTATATAAATTTTATGTCTTAGTAATTCAAGACTATGTTACTATTATATATATACTTTTCGTTGTTTTTATCTC # Right flank : CCTATGCAACCACTAACTATATTCGCCAAA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCATCCTTGTTTTAATGGATGAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 516-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMM01000073.1 Methanocaldococcus villosus KIN24-T80 contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 515 37 100.0 36 ..................................... CCGCATTTCCTTGGTCGTCTACATGTCTTTCTGTCA 442 37 100.0 33 ..................................... AAGAACATTAACAATCTCATTATTATCATTCAA 372 37 100.0 36 ..................................... TTGACATTCTGACACAAACTCTCGCCTCCACAATAT 299 37 100.0 35 ..................................... TAAATCCATCTTCGATATTAATATTGGATAATTCA 227 37 100.0 37 ..................................... TATAGAAAATATAGGAATAAAGGAGTTTGTTAAAAAT 153 37 100.0 36 ..................................... TTTCATGTAACGCCGCAACTACCGGGTCTATTTCCT 80 37 89.2 0 .........A.....................AA...A | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.5 36 GTTTGAATCGCTTATCCATTAAAACAAGGATGGAAAC # Left flank : TTTAGTTTGTTTTTATTTTAGTTAGATAAGTTATAATTGTTTATATTTTATAATACAGTTGTGCGTTATATTTATAAATAATTTGCATAATCTTTCTTAACTTTATAAAGGTTTTAATAATTGGGTAGTAAGAAAAATCTTGTTGAAAAAGAAAGGTTTATATAGGAGTTTTGGCGAATATAATTAGTAGTTGCATAG # Right flank : ACATTAAAAAATAAAAGAGCTATCTTTAAATTTTAAATATAAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGCTTATCCATTAAAACAAGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 12079-12332 **** Predicted by CRISPRDetect 2.4 *** >NZ_APMM01000010.1 Methanocaldococcus villosus KIN24-T80 contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 12079 37 89.2 35 T...TT..................G............ ACCTTGAATACTTGCTTGACATGGTTAGATATGCT 12151 37 100.0 34 ..................................... CTGGCCATTGATGACATTGACACTTACGTCGATG 12222 37 97.3 37 ........................G............ ATTACAAAATTATGTATATTGTGAAGATATTGATGAT 12296 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 96.6 36 GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Left flank : GCACTAACTGGTGGAGATAGGGAAGTTCAAAGGACACTAATGCAATTGTTAGCAGAAATGGATGGGTTTGATCCAAGAGGAGATGTTAAAGTTATAGCAGCAACAAATAGATTAGATATCTTAGATCCAGCCATTTTAAGGCCTGGAAGATTTGATAGAATTATAGAAGTTCCACCTCCAGATGAAAAAGGAAGATTAGAGATATTAAAAATCCATACAAGAAATATGAACTTAAAAGATGTGGATTTAGAAGAAATAGCTAAAATTACAGAAGGTTGTGTAGGTGCTGATATAAAAGCTATATGTACTGAAGCAGGGATGAATGCTATCAGAGAATTTAGAGATTATGTAACTATGGATGACTTTAGAAAGGCTGTTGAGAAAGTTATGGGCAAAAGAATTAAAAAAGAAGAACCTGCACATCTTTCAGTATTATATAGATAAACTTTTTTTATTTTTTATATTTAAAATTTATAGATGGCTCTTTTATTTTTATAATG # Right flank : CCTATGCAACCACTAACTATATTCGCCAAAACTCCTATATAAATCTTTCTTTTCCCATACGATTTTTCTTACTACC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCTTGTTTTAATGGATAAGCGATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //