Array 1 164640-163810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSQ010000001.1 Bartonella sp. W8167 NODE_1_length_1580724_cov_221.089699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 164639 36 97.2 30 A................................... TTTGCAGAGCAACCAGTTCCGCCATTTCTT 164573 36 100.0 30 .................................... AACCTTAAGCATAGAGACGGTTATCATTTT 164507 36 100.0 30 .................................... CACCCAGTCGATGTCTACCAAGAACGACGA 164441 36 100.0 30 .................................... CGGCGGCGAGAAAACTTGCTTCAAGATCAA 164375 36 100.0 30 .................................... TAGCGTCGGTAATTGATGCCGACAGTCATA 164309 36 100.0 30 .................................... TTATAATGACGGCGGCGGCTTTGCATCTTT 164243 36 100.0 32 .................................... TTGCAAAATATTCGGCAAGTTTGTCGCGGCCG 164175 36 100.0 30 .................................... TCAGTTGCAAATAGTGTCTTTGTAAAATTC 164109 36 100.0 30 .................................... GCCCTGCCACGAGTGGCGTAGGTGCGAGTA 164043 36 100.0 30 .................................... GGGATTGGTCTTCACTTCCTCGATCATTCT 163977 36 100.0 30 .................................... AGCTTTGGGAATGTTGAACAATAGCGTTAA 163911 36 100.0 30 .................................... CCCACTGTTTCACAGCACCAAACGAATAAT 163845 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 13 36 99.8 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTCCTAAAAATCTGACTATATTTTCACTTAAGTGAACAATCAATTTGCTTGTCCCTTAAGGCAAAAAGAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCCTATCAAAGCGACATCGGAAATTTATTCATCAATCACTGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAGACATTGGCTAAGCGATCTGCAAAAGATACGCTTGCAAGAGCTACTTATAATGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAAATTGACGACACCGTTCGGTCGCCCCCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATACTGGAATTGGCAAATAATATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAATGACATTTTTCCAGCGTTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATACTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCTTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTAACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAATAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 166754-166121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSQ010000001.1 Bartonella sp. W8167 NODE_1_length_1580724_cov_221.089699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 166753 36 100.0 30 .................................... CTGCTGCTGTTGCTGTTGAGCAAACTGTTG 166687 36 100.0 30 .................................... GCACCACGCAGGCGACATCGATGATCGCAT 166621 36 100.0 31 .................................... TCAAAATTAAAACCAAAGATGCCGGCGTTAT 166554 36 100.0 30 .................................... GCAACCATATATCGAGCATTTTACCAAAGA 166488 36 100.0 31 .................................... GAGCATCAAGACCATTCCGCCAAGCACTATC 166421 36 100.0 30 .................................... AAGGATTGCCATTGATACCCCTGCCTCTAG 166355 36 97.2 30 ...................................T GTGCTTGTTATTGACGAGTCCCATATGATA 166289 36 100.0 30 .................................... GCTGGTCAATTCCAGCCATCGGGGCCATCA 166223 36 100.0 31 .................................... TTTGAAGAGAATTTTTCGCGGGGGATCGCGC 166156 36 91.7 0 ...............................G.C.G | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.9 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCCTTTCACGTTTTCCCTGAAAATCTAACAAGATTTTCACATTGCTTGCCAATTCAGAACCGATGTTCGTCGCTCACCGCTTGGAACACCTCCTGTAATTGGCATTTGGTATCAACGAGCAACCTATAATCAAGCCTTATCGTCTCTGCTGTTCCAGAAGCCATTCATATTCCCGATGAAATCGGGAGATTGACGATGATGAACGACTATCAAAGCAAAAAACGGTTAGCCTGCATTCGATAGAGAGGAAACCTGCCGCAAGCCACGACAGTTCCTGAAGTATAAAACAAACAAATTGCGATAAAAACCAGAAAAAGAAGTATATCACAGCACGGAAAGTAACACGCCGGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCATCTTAGATATAACAGAATAAGAGGAACAAATCAATGAATAACATAATTAAGTAAGTAAAGATTGAGTATAACAAGATTTTGCTACCGTTCT # Right flank : CACAATCCAAAATCATCCTGTCAGGCAACCACTAGCCGCGCATTGACAACACGTCAGATGGTATTTAGCGACGCGTGTTTTTCGTGCCTTTGGAAATCCGAGTCCCAAAAGAAAACGTTGGCCATACTTTGCCAAACAACAACACGCGGCGATTTTGGAAAGTAAAAAGGGCACGACTATTTGTAAAGGCATTCGCGTCAAGTCGGAGTTTGTCCAACCCGCAGGCTGTGAAGCGAACACATGAAGAGAGTAACTTCAGTATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTATTTTGCATGTCGCGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 167796-167361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSQ010000001.1 Bartonella sp. W8167 NODE_1_length_1580724_cov_221.089699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 167795 36 94.4 30 A.G................................. GTGTTGCCATACATCCTTAACGCGTATCCG C,C [167788,167790] 167727 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATATTGGCTTTCTTGACCATG 167661 36 75.0 30 C....A..C...T........A..GG...A..T... TTTCATTAGCATGTGTTAGAAAGGTGTTGA 167595 36 100.0 30 .................................... GTTGAGGCGTTAGGAAAAGTCGCGGCTGTA 167529 36 100.0 31 .................................... TCTCGAATGTATTCGATTTTCCACGTGTTTT 167462 36 100.0 30 .................................... CGCCCGTATGGACGCCGACGAAGATGATCC 167396 36 97.2 0 ...........G........................ | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 92.8 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ATAAATGTAGACACACTACGCCTTTGGCCGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACTAGCTTTAAAAAACCGGAAAGCTTTTTGTGAATTAACCGGCAATCATGGCAAAAAACCGGAAGCTCTCTAAAACAAATAATTTTTTGTCGGGTAAACAGCAATAGGCCGGAAAAACTCTGATGCGTTTTAAAAAACGCGGCCCGGGCCCCGCGCAAAAATGAACAAAACAAAGTTGAAATGGTGAGCGGAATTTTCCAAAAAAACAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATGTTTGTTTAACAAATAAAGTTCGCCTTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTCTTTGAAACGACTTCTTTAGTTATGCGCCCGTTCGGA # Right flank : GATATCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTAAAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTCCCTGAAAATCTAACAAGATTTTCACATTGCTTGCCAATTCAGAACCGATGTTCGTCGCTCACCGCTTGGAACACCTCCTGTAATTGGCATTTGGTATCAACGAGCAACCTATAATCAAGCCTTATCGTCTCTGCTGTTCCAGAAGCCATTCATATTCCCGATGAAATCGGGAGATTGACGATGATGAACGACTATCAAAGCAAAAAACGGTTAGCCTGCATTCGATAGAGAGGAAACCTGCCGCAAGCCACGACAGTTCCTGAAGTATAAAACAAACAAATTGCGATAAAAACCAGAAAAAGAAGTATATCACAGCACGGAAAGTAACACGCCGGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 171079-170581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSQ010000001.1 Bartonella sp. W8167 NODE_1_length_1580724_cov_221.089699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 171078 36 94.4 30 A......T............................ GTCTCGTGCATACGGGAACGCAAATCTATC 171012 36 100.0 30 .................................... TTTGGCGGTTAGTGATGCGGCGTCGATTGA 170946 36 97.2 30 ..............C..................... TTTTCCATCAGGCGCGTAGCGACTGTGGTA 170880 36 100.0 30 .................................... GGCAGGGGAAAACAGAGAAGCCTAACGATG 170814 36 100.0 30 .................................... AGCGGACAAACCGGCGCCAATGTCATCAAA 170748 36 100.0 30 .................................... CAAAGACAACAATCCGTTTGAGTTTTGGTA 170682 36 97.2 30 ..............C..................... ATCTGGTGATGTTCCCGTCAACACGCGGCA 170616 36 97.2 0 ...........G........................ | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GTTTTCCCCGAAAATCTAACAAGATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATTGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAGCGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAAGCCATGGCGTTCCTTACTCGGCGCAGCTTAAATATAACAGAATAAGAGGAACAAATCAATGAATAACGTAATTAAGTAAGTAAAGATTGAGTATAGCGACGTTTTATCAGCGTTCT # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTCAAAAAAAATGCTGTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCTTCCACGTTTTCTCTAAAAATCTAGCAAGATTTTCACATAAGTGCACGATCAATTTGCTTATCTGTAAGGTACACAAAATATCGAAATTTCATCGTTCGGGCAAGGTTGTTACGATCTTCCTAAAACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTTAGAAAGACCTCAAGCCATTTTGTGAACCGCTGTTTCCATTTTTTAGGAAAGCTTTTGATAATATACTGGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCGGACTTTAAGATAGCGTGATAAACCGTAAGACAGCGAGTTAAACCGGTTTGTCGCATCCGTTTTGCTTTTGTCAATTTTTAAGCGTGGCTAAAATGAAAAAGCCTGCACCACTCGGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : GTTGCGGCTTGACCCCATTTTCTAATCTGTTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 5 172325-171695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSQ010000001.1 Bartonella sp. W8167 NODE_1_length_1580724_cov_221.089699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 172324 36 88.9 29 ..C..AA.......C..................... TTCATCAATTCAAGTGCCTTACTGGTTAA 172259 36 97.2 30 ..............C..................... AAACCCGCACCCTTTTGCTGGCGAAAAAGA 172193 36 100.0 30 .................................... AACTAAAATGAGCACAAACCGCCCATGGTA 172127 36 97.2 30 .................................G.. TACAGTGTCGCGTGGCGTGTCCTTGACGCT 172061 36 100.0 30 .................................... GCGTGTAAAGTGAACGCCCTTTATCAAATG 171995 36 100.0 30 .................................... CCAGTTTCCTTAATTGCGTTTGTTGATGCT 171929 36 97.2 31 ......T............................. CAAAGGCTATCTCGTTAACCTCATTGTCAGT 171862 36 100.0 30 .................................... GTCTAGCGCGTCGTTTATTTGGGAAACAGT 171796 36 100.0 30 .................................... TTTCTAGCAGATGCAAAAAGGGTGCTGTAT 171730 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTTCCCTGAAAATCTAACAATATTTTCACATAAGAGCACGATCAATTTGCTTATCTGTAAGGTAGAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGACATCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGCCCCCCCCAACACCAAAAAGGTGGCGTTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAATTCAACAAACAGTATCAAGAAGTAAGTAAAGATTGATTATGACGAAGTTTTACCGGCGTTCC # Right flank : CGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAATGCTATTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCATTCACGTTTTCCCCGAAAATCTAACAAGATTTTCACATTGCTTGGCAATTCTGAAAGGTGGTTAAATCTCTCACCGTTTGAAACACCTTGGAACACCTTTAAAATTAGCATTTGCTAACAACGAACAACCTATAATCAGGCCTTATCGTCTCTGCTGTTCCAGAAGCCACTTATATTCCCGATGAAATCGGGAGATTGACGATGATGAGCCAGTATCAAAGCAAAAAACGGGTAACCGATATTCGATTGAGAAGAAACCTGCCGCAAGCCACGACAATTCACGAAGTATAAAGCGCACAAATCACGGTAAAGGCAAGCAAAAGAAGTATATCACAGAAAGGAAAGTAACACGCCGGGGGGCCGGAAATGCAATCCCCACATCGCTAAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 6 173244-172943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSQ010000001.1 Bartonella sp. W8167 NODE_1_length_1580724_cov_221.089699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 173243 36 86.1 30 ACA..C..........................T... ACAGTCTATGCCTACACCTCAACCTGTTCA 173177 36 94.4 30 ................G.......C........... ATTGGTTTCGCTATCTTCGAGCAACGACTA 173111 36 97.2 30 .........................C.......... ACATCCGCTTGTCGCAACTGCTTCCGTTCT 173045 36 100.0 31 .................................... CAAGCCAACGCGCATACTCGGCGTCGTCCCT 172978 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 95.5 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTTGGTATGAAATTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGGAAGGTGTTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATTTGCTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTTATCTCGGCACTTGCTTTCTTCATCTTCCGAACATTGCCACGTGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAATCCACCGCACAACATTGATGAAACCGAAACATATTCT # Right flank : CGATATCCACTTACCCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTCCATTAAAATAACACCGGTAATTTTCGATTTTTTTGACGTGTCTTCCACGTTTTCCCTGAAAATCTAACAATATTTTCACATAAGAGCACGATCAATTTGCTTATCTGTAAGGTAGAAAAATATCGAACTTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGACATCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGCCCCCCCCAACACCAAAAAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //