Array 1 17489-18411 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJG01000007.1 Campylobacter lanienae strain P0084 .11822_4_46.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 17489 37 97.3 36 .......G............................. TCAAAATCACCAGTAGCATTAAACCCACTAGGTGTT 17562 37 100.0 39 ..................................... TTACTGTATATGATATTGTTGATTGTTTGATTGGTAAAA 17638 37 100.0 35 ..................................... TAGTAGTGAGTTTTTAAACAAAGATTTAGTTAATA 17710 37 100.0 35 ..................................... CCAAATACTTTAGCATAATGATAAGCTTTTTTGTA 17782 37 100.0 38 ..................................... TTAGTAGAAAAAGGCGAGAAAATCAACGAGCAAGAGCT 17857 37 100.0 36 ..................................... TCATTATTTTTAGCAAAAAAGAAAACGCCATTTTTA 17930 37 100.0 35 ..................................... TTAAAATTAGCCCATTGTGTTTAGCACACTCGCTA 18002 37 100.0 37 ..................................... CTAGAGAGAGTTTAAGCGCCTATGGGGATTTATACAT 18076 37 100.0 38 ..................................... TAAAGATAATAAAGAAAATATTCAAGATGCTGAGGTTA 18151 37 100.0 38 ..................................... TTTAGGAGCATTGATAGAGCCGTTGCGTGGTATAGTTT 18226 37 100.0 37 ..................................... TAAAATAGAATTTTTTGTAATTCGTGATTTCTAAGTA 18300 37 100.0 38 ..................................... TTAAATTATCATTGATTAGATTTTGTATAGCTGTGCCT 18375 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 99.8 37 GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Left flank : ATAGCGTTATAAGAGAGAGAAAACTTCTCTTACTCTAAATCTAAAATAAGAGAAAATGAAGTTAAAAATAAAGAGATTTATTTGGGGAGATGATTAATAGTAATAATACATTATCATAATAATTATTTATAAATCTAAAATTTTTTAAATTTTTGATATTTTTAAATAATTCTATTATTTGTAGTTTGAGTTAATATTTCCATTTTACTCTCCTAAAAATTGTTTAAAAACTTCTCTACATTATCACGCTCAAAATATTAATATTGTGTAGCGATACGCATTAAAATCATCTCTCTCTTAAACTTATCAGCTCGAGCTCATCACTTTGATAAATTTTATATAACGAAGCATTTACTAAATCTATATCATCAAAATTAGCCGCTATACCTAATTCTGGGACAATCTCATCATAAAATAGCTCTATTTGCTCCCCTTTTTTGTAAGCACAATTCTAAAAGCATCTATAAAGTCTTGAGTGTTTGTAAAATTTTTGTATTTGT # Right flank : CCCCGCACAAAATGCCCTGTTTTAGGGATTTTGTGCTTAGTTAATTGTAAAATTTTTTCCACTTAGAAAAAAATCGCAAAAAGTGGCGAATTTGTGGAAAAATATGTTATAATCCAAGCGCAAATTATACCATAATCTAGCTTATAGCGTTTGAAATCACCACAAGGTGTTTTCATATCGGGGCAACTGCCTTTGGCACCCCCGGTTATTCTCTATCGTCACAATAATTTTTAAACTCACATTGCGCACAAGCTGTAATGCTAGCTGAGCTTTGGGGAAAATATCCTTTTTTTAATAGATCTTGAATTTGCGTTAGTGTTTTATCAAAATAAGCTAAATCCTCTTTATAAATTTCAAAGATTTTAAATTTTAGATTATTTGAATAGCATAAAATCACCCTATGAAAAGGCTTTTTAAAGTGCTTACTAGCAAGTTTAGAATATGCTATAAGCTGCATTTTTGCGCCCTTGCTTAAAATTGGCTTTGATTGATTTTTAAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 61676-62841 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJG01000005.1 Campylobacter lanienae strain P0084 .11822_4_46.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 61676 41 95.1 34 ......A.............................A.... TTTTGCAACCAGCAAACATCCTAATCATATCAAC 61751 41 100.0 34 ......................................... TTTTGCAACCTCTAAACATATAACTCATAACAGC 61826 41 92.7 34 ..............T........T...C............. TTTTGCAACCAGTAAACATATTTTCCATATAAAT 61901 41 95.1 34 ...................T...T................. TTTCGCAACTAGAAAACATCCCACTCATCTTAAC 61976 41 90.2 34 ..............T....T...T............A.... TTCTGCAAACAGCAAACATCCCATTCATATCAGC 62051 41 90.2 34 C..................T........A.......A.... TTCTGCAAATAGCAAACATCTGACCCATATCAGT 62126 41 90.2 34 ...G...............T...T...C............. TATCGCAAAGGCAAAATATCCAGCTCATATCAGT 62201 41 92.7 34 .......................T...C...........T. TTGTGCAATTTCTAAACATCTCACTCATATCAGT 62276 41 100.0 34 ......................................... TTTTGCAAAAAGCAAACATTCCGCCCATATTAAC 62351 41 92.7 34 ...................T...T...C............. TCTTAACTTTATAAAACATAGAATTCATATACTT 62426 41 82.9 34 ....T.AGA.....T....T................A.... TTCTGCAAACAGCAAACATCTCACTCATATCAAT 62501 41 92.7 34 .......................T....T.......A.... TTGTGCAACCTATAAACATCTGACCCATATCAGT 62576 41 92.7 34 .G.................T........A............ TTCTGCAACCAGCAAACATCTCACCCATATCAGT 62651 41 90.2 34 C.......C..........T...T................. TTTCGCAACCAGAAAACATCCCACTCATATTAAC 62726 41 92.7 34 ...................T...T........T........ TCTTAGCTTCATAAAACATAAAATTCATATACTT 62801 41 85.4 0 ....T.AGA..........T................A.... | ========== ====== ====== ====== ========================================= ================================== ================== 16 41 92.2 34 TACACTGCTTACATCCCAGCTATCAAGTGGTTGATTGAAAT # Left flank : TAGTGTGGGCTATAGGGCTATTAAGACAATCGGGCAAAATACTTCTTGATGCTAATATGAATGAGCCAATAGTTAGCGAAGTGGTAGATATTTTACGCCTATTTAGAAGTGATATAGAAATCAAAGATCTACACCTTCTAAAAGTAGCAAATGACAAATATACTTGTATAATCTCTCTAAATTCCATTGATCCAATTGATATAAATCTTATCAAAAAAGAGCTATCAAAGCATGAAGAGCTAGTTCATATAATAGTGGAAATATATCCAAAAAAATATTAAATTAAATTTTAATAACAAGAAGAAAATATGAATAAAATTTTAGCTATTATATTATTTACTAGTGCTTGCTAAGCTTTAATAAATAGACCAAAGCAAGTAGCTTTAAAATGGTATCTCATCTTCATCATCATCTTTTTCCATCAAATCATACATATTAGTAAATTTAGGCTTATTCTCATCATTGATTTTGCAATCATCAAATATCCCACTCATTTTAGT # Right flank : TTTTCGCGACCAGCAAACATCCCACTCATATTAGTTACACTGCTTACATCCCAGCTCTCTATACCACTAAAATCTTCACGCCCACTCCAAGCAAACAACTCATTCATATCAGTTATAGCACTAGTATCTATATCGCCTAAATATATATCTTCATCATAAATTAAGCCCTTTAGCTCATCTTTGCTTTGTGGTGCATATAGCTTAATAGGAAAGAAATACTCCATATCCGCTACAGCTGTAATATTATAATCACTAGCAATACTCTTAGCTATGGAGTTATCTTGACAGATGATACCAGCTATCATATCAATTGACAAATGCGTAGGCACAAGCGCCTCAGCCATCATTTTATCTATTTTAGATTGTTTGATGGATCTATCGGCGTGGTTCCAGTCTTTTGACATCACCTCACTCCAGCTGATAAACTGCGTATTTAGCAAGTCGCTAAGCTCATTTGCACATTCATATCTAGCAGCAGTGGCACTAGCGTTAGTAAATAT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACACTGCTTACATCCCAGCTATCAAGTGGTTGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //