Array 1 682616-682885 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNEL01000001.1 Streptomyces sp. TS71-3 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ==================================== ================== 682616 39 82.9 35 C.............G..-T..C..-..........C..... CGAACGGGAAGGGGCAGCGCCCCGATGGGGGCGCG C,C [682629,682655] 682692 41 100.0 35 ......................................... ACTGAGCGCAGGGGGCTGGGCCCCGATGGGGGCGC 682768 41 92.7 36 .....................CGA................. GTGGACCGCGGGGGGCTGGGTCCTGATAGGGGCGCG 682845 41 100.0 0 ......................................... | ========== ====== ====== ====== ========================================= ==================================== ================== 4 41 93.9 36 GGGAACTGCGCGAGTAGCCACGACGGGCCGGTGGTTGAAGG # Left flank : TGCCGCGCGGCATGAAGGTCGACCTCGGCACCGTCGGCTCCATCGAGGAGATCCTGACGGGTCCCTCGCACAACCCCGACGGCTCCATGAACTTCTTCGGCGCCCTGCGCCGCGCGATGGCCACGACCGGGTACAGCGAGCTCAAGGAGTTCCAGCGGGTCGAGGTCACGGTGGCGGACTCGCAACACAAACGGTAACGCTGCGGTGCGCTGCGCTGCGCTGCGCTTCGCTGTGGCCGGGGTGTGCGGTGCCCACGGCGGCTCTGCGTTGCCCCCGGGATGCCCTTTCCAGACGCTCCGCGCCGGCCCGCGTGGACTGCTCTTGGCGGTTCGGCTGAGGTTGGGTGTGGTTGTTCGCGCAGTTCCCCGCGCCCCTTTGGTGAGGCTGCTCTCGACGGGTCAGTTCAGGCTGGGTGTGGTTGTTCGCGCAGTTCCCCGCGCCCCTTGGACGGCGCTTCGCGCCTCATCAGGGGCCTGGGCTGGTTCGCGAGGTGACTCCGC # Right flank : GACTGAGCGCAGGGGGCTGGGCCCCGATGGGGGCGCGGGGAACTGCGCGAGGAGTCGGCACCCGCCGGCGGCAGGACGCAAGGAGGCGGGGCCCAGAGAAGGTGCGGGGAACCGGGGGCGCTCAGAGGCGTTCCGCCGCCCCCGCCGGCGTCGCCCCGCGAGTGTCCAGCAGAAGCTGCGCCTTCACCGACAGCCCCTGAAGGTCATACGTACGGTGATGCTGCAGCAGCAACGTGAGATCGGCGGCCGCAACCCCCTCGTAGAGCGCATCGGCCCGCGGCACCGCCCGCCCCCGCACCTCCCAGGCGGGCACGTAGGGATCGTGGTAGCCGACCCGCGCCCCCAGCTCCATCAGCCGCAGCGCGATCTCCTCCGCAGGTGACCCCTGCCGATCGGCCATATCGGGCTTGTACGTGACCCCGAGCAGCAGCACGTGGGCACCGCGTGCCGACTTCCCGTGCTCGTTCAGGAGCGCGGCGCCCCGCTGGACGACGTACTGC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAACTGCGCGAGTAGCCACGACGGGCCGGTGGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 1144466-1142240 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNEL01000001.1 Streptomyces sp. TS71-3 sequence1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1144465 29 100.0 32 ............................. GACCGGCGCGCTCGGGCTACGCCCGCCGCCCG 1144404 29 100.0 32 ............................. GCTTCGGCCGCACCGCACCCGGGGCGCTCGGA 1144343 29 100.0 32 ............................. TGTCATATGCCGTCATGACAGGAATCCTTGTC 1144282 29 100.0 32 ............................. CTTCTTCTGACCTGCTGAAAGCCGGTCCGCGG 1144221 29 100.0 32 ............................. TCGCCCGGGTTGGCGGTGCCGTCCTGCGGGGG 1144160 29 100.0 32 ............................. GAACCACTGAAGTTCGAGGGACAGACCGAAGA 1144099 29 100.0 32 ............................. GTATACGCTAACCGCCTCTCGTGCAAGGTTGG 1144038 29 100.0 32 ............................. GGCTGCGCGACGGCGACTTGCCACCGCCCGAA 1143977 29 100.0 32 ............................. TCACGCAGGCGCGCATGGTGATCCGGCCAGGT 1143916 29 100.0 32 ............................. TGCGCCGACTCCAGCGCGATCGCGAGGCCGGC 1143855 29 100.0 32 ............................. GGCATCCATGCGATCCCGGTCTCGTTCCGCGC 1143794 29 100.0 32 ............................. GCCTGCGCCTGGTCCTGACCGCGCTGACGGCC 1143733 29 100.0 32 ............................. ACCAGCGCGTAGCTTTTCAGGAAGGACGAGTT 1143672 29 100.0 32 ............................. TACCCGTCGACAGAACTTGCCTTCTTCCTACT 1143611 29 100.0 32 ............................. GCGTAGCCGGGCCGGTGCGAACCCCAATCGGG 1143550 29 100.0 32 ............................. TGCGGCGGCCGAGGTAGGGCGGGAAGACGGGT 1143489 29 100.0 32 ............................. ACGCACAGGGTTTCTCTCACTCTCTGTGTTGC 1143428 29 100.0 32 ............................. GGAGAGCGCGGTGCCCTGGGCCGGACTCGAAC 1143367 29 96.6 32 ............................A CTCGCTCTGAAATGGCAGGATGAAAATCCAAG 1143306 29 100.0 32 ............................. GGCGAATGCTTGGGTAGCTGTATCCGGTGTCT 1143245 29 100.0 32 ............................. TTCACCGTTTGCTGCATTGCTTTTCCTTTCGC 1143184 29 100.0 32 ............................. GCGTCGACGTCGATGCCCTTCACGTGGGCAAG 1143123 29 100.0 32 ............................. GTCCACAACCGTCCCAGCCCAGCCACCAGCCA 1143062 29 100.0 32 ............................. GGCGAGTGGCTCGCCATCGTGGTGCAGCAACT 1143001 29 100.0 32 ............................. GCCGGAGCTGACCAGGACACACAAGGTGCTGA 1142940 29 96.6 32 ............G................ TCCCGCATCGCCGGCCTCGGCGCCACCGAGGA 1142879 29 100.0 32 ............................. CCGCCGGCGATCCCGTACCGCGCCCCCGGCTC 1142818 29 100.0 32 ............................. GCTATCGCCACCGGCCTGAGCACGGCTGCCCT 1142757 29 100.0 32 ............................. GCCCACGTCGTGTGGGGCTTCACGGGGTGGAC 1142696 29 100.0 32 ............................. GGCCGCCGCCCTCCCTTCCGCATCCGCTGGTG 1142635 29 96.6 32 .............T............... ACCGCGTAATACGCCCGGTGCGTGGAGTACGG 1142574 29 100.0 32 ............................. ACGCGTAAGTAGCCCTCCATTTCCCCGATTGC 1142513 29 96.6 32 .................A........... CATGTGGTCCACGCACTGCGGGCAGTCCTCAC T [1142508] 1142451 29 100.0 32 ............................. AACGTCGGGACACGGGAAACAGCGCGGCCCCC 1142390 29 96.6 32 .........................C... AAGCCTGCGACGTATAGGCCCGGTAAGTCGCA 1142329 29 93.1 32 .........A...A............... GCGGTCTTCGTGCGCCGGTTGAGCAGGAAGGC 1142268 29 89.7 0 .................A......CC... | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGACGGCCCCGACAACCACGAGTACGAGGACGCCCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCTGCAGGCCTCAGAGGCTTCCTCACCCGCTGGCTTCTGGAAATCTCCGCAGGCGTATTCGTGGGCAACCCCTCCGCCCGCATACGCGACACGCTCTGGGAAGAAGTCCAGCAATACGCAGGCCAGGGCCGCGCCCTCCTCGCCCACACCACCAACAACGAACAAGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAGGGCATCACCCTCATCCACCGCCCCGACCCCAACGCCACCGCACCACCCAGCACAACTCCCCGCGAGAAGCGGCCCCCGTCCGGCTGGAGCAGAGCTTCCAAGCGACGACGCTTCGGGGGAAGCTGATGCACACTAGCCCCTTATGGGCAATTTGCCGGAATCAATGAAAGTGCTCGCATACCGACCCCTGCCCCACTAAAGCCGCAGGTCAGCCAGT # Right flank : ACGCCCGCCCCGCCCTCGAAGATGGCGGACTCGAACCCGCGGCCAAGAAGACCCCACGTCTCCCCCACCACCGGTGGCCGAACATGACGGCCCCATCACCGCCCCCGCCCGCCAACCACCGGCAACGACACCACCAACACCCCACCCGGCCCCGACGCCCCCGACAACCGCCCCCAGCACCCCACCCGCAACGGAATCCACGCCCCCACCCACGCCGCCCGCTGCCTGACCCGCCACCAGCCGTATCCAGCACCGATCCAGCAGCGGTACGGACAACCAGGGATGACGACAGATGACGAGACGTCAGTCGATCCAGCACGGATCCAGCAGGGGATACAGCAACGGGGCCGACCCCGAATGGGACCGACCCCGCCTGACCTGCACGTTTGCTAGATCGCCACACCGATGCTACGGCGCCCGCTAAACGTTGAACCGGAACTCCACCACGTCCCCGTCCTGCATCACGTACTCCTTGCCCTCCATGCGGGCCTTGCCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1154273-1156070 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNEL01000001.1 Streptomyces sp. TS71-3 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1154273 29 100.0 32 ............................. CAGAACCAGACAATGCCCAATGTCTGTAGGCA 1154334 29 100.0 32 ............................. GTCGAGACCCGCTACGGCGCCATGTACAAGGC 1154395 29 100.0 32 ............................. ACCACCGACATCGAGCAGAGCCGCAGCACGGT 1154456 29 100.0 32 ............................. AGGTCTGCTGTGCGGGCCGGTTGTCCGCATCC 1154517 29 100.0 32 ............................. TCGGGGTCCAGGAGGTGTCGGGGCATCGGAAG 1154578 29 100.0 32 ............................. AGCCAGAGTCCACGATCAAGGGAGAACCGAAT 1154639 29 100.0 32 ............................. GAGGAGAGTGCCCGCCGTGACCACGCACGCGG 1154700 29 100.0 32 ............................. CTGCATGCTGGTGATGCCGAGCGCGTTGGCGG 1154761 29 100.0 32 ............................. GACGAGCTCAAGGCCACCCTGGCGCAGCTCGG 1154822 29 96.6 32 ...............C............. GTACACGTCCGGGTAGCGGTCGGAGACGCCGA 1154883 29 100.0 32 ............................. ACAAGGCCAGACCGTACCGGCATTGCCGTTGG 1154944 29 100.0 32 ............................. TTTCCGAGAGCCCAGCGCACGGCGTGAGGGGT 1155005 29 100.0 32 ............................. GCGCGACGTAGCTCCTCGTCGCGACGCATCCA 1155066 29 100.0 32 ............................. GAGCAGAATATGACCGGCGCCGCTGTTCCCGT 1155127 29 100.0 32 ............................. GCGAACGGGGTGTAGGGGGTGAGACGCTTCTT 1155188 29 100.0 32 ............................. GCGGCCTGTCGACTCGTGCCGAGCGCGCGGCC 1155249 29 96.6 32 ............................G GGCGACCTGGACGACAGCGAGGACATCGTCTG 1155310 29 100.0 32 ............................. GAGACGTTCGCGGAGTCCGAGCAGGATCGCGC 1155371 29 100.0 32 ............................. GTGACGTTTCATGACGAGGACGGGCCGCTCGG 1155432 29 100.0 32 ............................. ACTGTCCTGTCGTCAATCTCCACCTTGATGGG 1155493 29 100.0 32 ............................. GGCACCTGGACCGTGCCCGGGTGATCGCCAAA 1155554 29 100.0 32 ............................. CCGTCGGTCTGGGCTTGGAGGTAGAAGGCGGT 1155615 29 100.0 32 ............................. GGCATGGTCCTGGAGGTCATGGGCGAGGTCGC 1155676 29 93.1 32 ......................A.....T CCGCGCGTGCGGCGGCGACGCCGTCCCGGGTG 1155737 29 100.0 32 ............................. GGCTGCTGGACAACGAGGGCCGCGGCCGGCGC 1155798 29 93.1 32 ......................C..G... TACCCGGACACGCTCACGCGGGTCGCGGTCAA 1155859 29 96.6 32 ........T.................... GCGAGGATGAGTCCGATGTCGATTACTTCCTG 1155920 29 96.6 31 ........T.................... GTGCAGGGTTCCACCGGCTCAGCCGGGACGG 1155980 29 93.1 32 ...................C.....C... AGTCCAGGTCCGCGCCGAACGCCTGACTCATC 1156041 29 93.1 0 .........C...............C... | G [1156058] ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CAGCGAGCCATACGGCGAGGGCGCGCGCGTCGGACTCCCCCTGAGGCAGCGCCTCGGCTACCACCCTGCGCACTCGCACGGGCAGCCAGTGGTCCCATAACAGGCCAGCCACAGCCGCACTGTCCTCCATGTGCCGCCACAGGGGAAGCCAGCCCTCGGTGTCACGATCATGCTTGGCCCACACGGATCGTGCCGCCGCCCCAAGCCGACCCAGCAGACCGTCAGCACCAGATGCACGTTCCTCGGCACGTCGCTCACCGCTCATGACAGAGGAATACATGCGAAACGGTGTTGTGTGGGCTGGATTTAGAAGATAAGAGCAACTGGGGGGTGGTTGGAGAAGACGGACTGCCGAGTCGTATCGCAGTGCATATGCTGGAGAGTTGGGGTGTGGGTGGCCTCGCTCAAGGCAGCTAATTAACAAATGTCCTATTCATCCGAATCGAATGAAGTGCTCGAAATCCAGCTCCTCCGCCGGCTAAAGTCGCAGGTCATCGAGT # Right flank : CCGCGACGGGAGCGACTCACGAGCGAGGAGCTGGGCCTGCTGCCGTATGACGTAGGCCGAGCTCCGCCCGCCGCACAGGCCTGCGACGACGGGAAAATTACGGACTGTCGCCGCGTAAGCACGCGCGATAGCCTTGTCTCTGCCTTGTGCGGGATGACCGGCGACACAGGAGGGGCGCGAGGGGGATCGTGGAGCGGCGCGATATGCGAGGGCATTACGAGGAGCTGGCAGTCGAGTACGACGAGCACTGGGTCTACGGTCCGGACTACGTTCCCTGGATGTCGGGCCGGATCGCAGATGCGTTGCGGCTCGTTCCCACGGACCGAATCGCCGATGTCGGCTCGGGGACGGGTCTGTTCGCCAGAGAAGTGGCGCGTCAGCTCCAGCCTCGTCATCCCATTCTGTGTGTCGATCCGTCCGAGGCCATGCTCAGTCAGCTTGGCACGCCGCCGCCGGCCGCTCTGACGCCGATCGTTGCGTCTGCTGAGGACATCGCCGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1222624-1224055 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNEL01000001.1 Streptomyces sp. TS71-3 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1222624 29 100.0 32 ............................. TGCTTCAGCGCCCGCGTCCGGTCGCCCAGATC 1222685 29 100.0 32 ............................. GGCGAGGACTGGAGTGCGGCCCGCGCCGCGAG 1222746 29 100.0 32 ............................. CATGGAGCTCACCGGCCGCACCGACTGGCTGG 1222807 29 96.6 32 ...........G................. GCTGCTGTGGAATGCGGGAGATGAGTCCCCGA 1222868 29 96.6 32 ......G...................... ACATCACGGACGCCCACTTCTGCCTGGTAACA 1222929 29 100.0 32 ............................. GCGCACTGCGTCGCCTCCTCGGCGGGGGCCTC 1222990 29 100.0 32 ............................. TGTTCCTGACGTCCCAGATCAGCGCCTACTAT 1223051 29 100.0 32 ............................. GTCGCGGCCACGTCCCCGAAGGCGCGCACCTC 1223112 29 96.6 32 ............................T CATGCGGAGGGGGAGTCACCCAAATTTGGGTG 1223173 29 100.0 32 ............................. TTGGTGGCGGACAGCAGCCCTCGGGCGTGCGC 1223234 29 100.0 32 ............................. ATCCCGTAGGCCTTGCGGACAGTGATGTCGCT 1223295 29 100.0 32 ............................. GGCAGCAGCGGGGCGCGGGACGGCATGCAGGC 1223356 29 100.0 32 ............................. GGCGGCGGCGCCTTGAAGTCGGCGCCGCACGG 1223417 29 100.0 32 ............................. GCGGTGCCGCGCCCCTTCGAGATCTCGATCAG 1223478 29 100.0 32 ............................. AGTCGAGGCCCGCCGCGCGCTCCGGGGTCGGG 1223539 29 100.0 32 ............................. ATGAGGGGGAAGGTGAGGCCGCCGCGGGTGAT 1223600 29 100.0 32 ............................. CACCGAACGGAAGCGTTGCTCTTGCTCAGCGT 1223661 29 100.0 32 ............................. TCCAGGCACTCACGCTGGAAATCGGGGTGTCG 1223722 29 100.0 32 ............................. GACGGCCCAGGCCTGGCCGCCTCGCTGGCCCG 1223783 29 100.0 32 ............................. GCGGACTCCGATGCGCCGCCCTGGGGCGTGAT 1223844 29 100.0 32 ............................. ACGACATGGCCACGGTCGTCGGCGGGGTTGGA 1223905 29 100.0 32 ............................. GTGGAGATTTGAGCGAGATCGAGGCGAGACTT 1223966 29 86.2 31 .............C...A.........TG GCGCCGAACGTCTGAGGCGCTGGGGCTGGCA C [1223991] 1224027 28 79.3 0 ......T.T..-.C.......G...C... | A [1224044] ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.1 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CGTACACGTACCACTTCCGAAAGGCACTCAAGGATGTAGGGGTGGTGAAACCGGACGGGAGCCCGAAGTACACACCGCACTGCCTGCGCCACTTCTTCGCCTCCACCGCCCTCGCCGCCAGCATCCCCATCCACGAGGTCTCCCGCTGGCTCGGACACAAGTCGATCAAAACCACGGTCGACATCTACGGGCACCTCGTCCCAGCCTCCTGGGACCGGTGCCGCACCGTCATGCAGACCGCTCTGCGTCCTGAAACGGTCGACTCATAGCCGAGCCAAATACCGTGGGGAGTCTGTTGGAGCCAACCCGCTGGCGCGGGGCCGACTTCGCACGAACCACCCGCAGGTGCGCGTACTTGACCATCCCCGTGTGCATGGGGCCGATGCTTTCTGACCGGACACCCCATGAAAGTTGTTATTTGGCAAATATTCCATTCGTCTGAATCAAATGAAGTACTCGAAATCCAACTCCTCTGCCAGTAAAGTCGCAGGTCGTCGAGT # Right flank : CGTGGTGAGAACGGCTCAGGGCGTGGAACTGGGTCGCTGCCGTAATGCCATATGCCGAGCTTCGCCCACCGTACGGGCCTCCGGCGACGGGAATTGCGGACTGCTACTGCGTAAGCAGTCGCGATGAGCTTGTCGCTGTCTTGTGCGGGATGTCCGCGCCACGGTAGGGACTTAAGGTGCTTTATGGGATGTTAAATGCCACTTTTACCCAGTTAGTGCATGGGGAAGGTGTGGGATCGAGCCGTTCACGATCTTTGTGGGCTGGCAAGCCGGATCAAGACGGAGACGGTCCCCGCGGGGATGGTCCCGCTCGCCGGGACGGCTTCCGCGCCGTAGTCCAGTCGCCCCCGCACCTGTCTGGATGACCCGTACCCGTAGTGTCAGAGCGGGGCTCCTCCCACATCGTCTGGCGACGTTGAGTAGTGGCCGCTCAGCCAATGTCCCTCTGCTTCATGGCACTTGGGTTGGCGGGTTCTCGTGTGTCGGACGTGTGTGACGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1234819-1236131 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNEL01000001.1 Streptomyces sp. TS71-3 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1234819 29 100.0 32 ............................. AACGCCCGCATTCAGGGAAAAGGTGTGAGGAA 1234880 29 100.0 32 ............................. GCCTTCGGGTTCGAATGACTCCGTGGTCAGCT 1234941 29 100.0 32 ............................. ACCCCGGGCCGTGCCATGACCCAGGACCGCGG 1235002 29 100.0 32 ............................. TCGGATCATCCAAATCGGCCCACCCCTGCGAC 1235063 29 100.0 32 ............................. CGTCATGCGTGACCCCCACCGGGGGTACATCT 1235124 29 100.0 32 ............................. TTCTGAACGTTCGTCCAGTACCGACGCTTTCC 1235185 29 100.0 32 ............................. GCGTCGCGCACCGTGGCGGGGTCGGCGTCGCC 1235246 29 100.0 32 ............................. TACTGGAGAGTCGAAGGACCTGTCCAGTCATA 1235307 29 100.0 32 ............................. GACATCGCGGCCTTGAAGGATGCTCGCCTGGT 1235368 29 100.0 32 ............................. GCGGTCCAGCTCGCGCCAGAGCTGGCGCGGCC 1235429 29 100.0 33 ............................. GACACTCTCGAAGTCGCGGCAGTCGCGGCACTT 1235491 29 100.0 32 ............................. GACATCGCGGCCTTGAAGGATGCTCGCCTGGT 1235552 29 100.0 32 ............................. GCGGTCCAGCTCGCGCCAGAGCTGGCGCGGCC 1235613 29 100.0 32 ............................. ATGCCGGGCTGCGCCCGTTCCTGGCTCAGTCC 1235674 29 100.0 32 ............................. CTGACGATGCCCGAGCTGCTGTACGACGTGCA 1235735 29 100.0 32 ............................. AACACGGGCCTGTCCCTGCCCGAGGTGCTGAT 1235796 29 96.6 32 .................A........... TCCCCAGCTGTAGTTCACTGGCGCGCATGTGC 1235857 29 100.0 32 ............................. AGGGCGTGGCCCACCTCGTACCGCGGCCCCCT 1235918 29 96.6 32 .........................C... ATGAAGCGCATGAAGTTCTTGGGCATGGGCCC 1235979 29 96.6 32 ...........................T. AACACCTCTTCATGTTGCGAGGCTGGGCAGAG 1236040 29 96.6 32 ........T.................... GACATACGCGTCAATAAACTCGCCGAGACTGT 1236101 29 93.1 0 ............AT............... | TG [1236123] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.1 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CACGCCAGCACCAACAGCGCCAACGCGGCCCGCATGAACGAGATCCGCGAGCAGATCGCCGGGACCTGAGCGAAGCCTGCCCGCAACTGGAGCTTCAGTTCGCCAGTGCTGCGCCCGCATAGGTTCACCGGGGCGGCGGTCGCCGACACGCTTCGTCAGCTTGGGAGCGAGGCTTGCATGTTCCTTCTGCGCGGCGGTGTCACCCGATGCGCACGATCGTCATGACCCGGGACCAGGCCGACGACTTCGACGGCCTCGCCGTACCCGGATAACCGCTGCGTCCGAACGTACTGTTCCGGCATGTAATGCGAGAGTGGGGGCTTCCCCGACTTCCCCCGCAGCGTGGACACCTGAGCCTTCCTCGCAACGCATAAGCTGAGTAGCCGTGCTTGGATCGGATTTCATTTTGGGAAGTTATGTAAATAATGTTCTATTTGTCGGTATCAATCAAAGTGCTCGGAAATCAACTCTTGCGCTGCTAAAGTCGCAGGTCACCGACA # Right flank : CAGGGGAACCGCATGCTGCCGCCTGAGGTCAGGCTGCCCCACGCGCTCGCGCGATCTGCCAGACGGCTCGGCCGGGTCGACGCCGCTCCTGCGGAGATGTCTCCCCACGCCTAGGCATCAGCGCGCCCTGGACACGGCCCGATGGTCCCGCAGCCGTGGGGTGATCGCAGGGGTGATTCGGTGCCGCAACGGCACCCTACGGACCCCTGCTGGATCCACGCTGGATAACGTCCGCAGTCCGCCCGTTTCCGCAGGTGACAGCGCCGCTCCCGACGTTCCGGTTCAACGTGTAGCTCTGGTGCGATTCACCCCTGGCCTGTAAATGCGCAGGTCAGGGGGTGTTTTCGTGGCGGCTGGACCCTGGTTTTCAAACGTTGTGGCGCAACGTCTGAATGAACCGTTCTCGCAGGTCAGGGGAGCGGTAGTGGCTGCCGGGCTCGGGGAGTCGGAGCGTGACTGCTGGATCCGTGCTGGATGGACTGATGCCCCGTCAGTTCTGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //