Array 1 45852-47980 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYC01000177.1 Xanthomonas fragariae strain CFBP 5253 isolate CFBP 5253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45852 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 45912 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 45973 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 46033 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 46093 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 46153 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 46213 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 46273 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 46333 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 46393 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 46453 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 46513 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 46573 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 46633 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 46693 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 46753 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 46813 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 46873 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 46933 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 46993 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 47053 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 47113 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 47173 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 47233 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 47293 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 47353 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 47413 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 47473 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 47533 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 47593 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 47653 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 47713 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 47773 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 47833 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 47893 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 47953 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACGACCTGCCGGGAAAACAGATCGATCACAACAGCCAGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //