Array 1 37826-38319 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBLC01000020.1 Streptococcus agalactiae strain BE-PW-108 ctg7180000001628, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 37826 32 100.0 34 ................................ ATAGTCCCACATATTGCTATGAAAAAACGGAAAA 37892 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 37959 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 38025 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 38091 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 38157 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 38224 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 38289 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 97.3 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45638-44056 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBLC01000010.1 Streptococcus agalactiae strain BE-PW-108 ctg7180000001618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================== ================== 45637 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 45571 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 45505 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 45439 36 100.0 30 .................................... ACGGCACTTTTAACCGTCTCTCCGCTTCTT 45373 36 100.0 30 .................................... GTAACCCGTCTTTTCCATCAGTCCCATCTT 45307 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 45241 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 45175 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 45109 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 45043 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 44977 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 44911 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 44845 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 44779 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 44713 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44647 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44581 36 100.0 58 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTAGTACTTTTACAATATGTGTTTTCACTAC 44487 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 44421 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 44355 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 44289 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 44223 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 44157 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 44091 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================== ================== 24 36 100.0 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //