Array 1 50-1724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWK010000113.1 Erwinia amylovora strain CFBP 7131 Ea_CFBP7131_contig_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 111 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 172 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 233 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 294 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 355 29 96.6 32 ......T...................... TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 416 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 477 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 538 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 599 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 660 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 721 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 782 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 843 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 904 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 965 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 1026 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 1087 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 1148 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 1209 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 1270 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 1331 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 1392 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 1453 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 1514 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 1575 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 1636 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 1697 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TGAGCGGGGATAAACCGACAAAAGACAACACCCCCCTTACCCCCCCACGG # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 455-2560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWK010000105.1 Erwinia amylovora strain CFBP 7131 Ea_CFBP7131_contig_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 516 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 577 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 638 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 699 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 760 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 821 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 883 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 944 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 1005 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 1066 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 1127 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 1188 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 1249 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 1310 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1371 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 1432 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 1493 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 1554 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 1616 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 1677 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 1738 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 1799 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 1860 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1921 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1983 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2044 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2105 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 2166 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 2227 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 2288 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2349 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2410 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2471 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 2532 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAG # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12024-12352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWK010000105.1 Erwinia amylovora strain CFBP 7131 Ea_CFBP7131_contig_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12024 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 12084 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 12144 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 12204 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 12264 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 12325 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //