Array 1 53511-54208 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RKRJ01000007.1 Neisseria animalis strain DSM 23392 Scaffold7_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     53511	    35	  83.3	    30	A..-...T.A..G....T..................	CAGTATGCCTGTCGGTATGTTGTTTTCTTG	C,AA [53516,53522]
     53579	    36	 100.0	    30	....................................	TGAAACGCCTCCTCTGCCGTGCTGGGGTAC	
     53645	    36	 100.0	    30	....................................	TACATAGTAGTTTTCAGCAATATATGACTT	
     53711	    36	 100.0	    30	....................................	CCGCCACACCCGGCACCGGCAAAACATCTA	
     53777	    36	 100.0	    30	....................................	TCAGTAATGCCCAAGGAGAAGTCGGCAGGA	
     53843	    36	 100.0	    30	....................................	ATTTTTTGGTTGCTGTAGGAGAGGTCTCCA	
     53909	    36	 100.0	    30	....................................	TTCATACGGCGCAGCGCATCCAGCAGCTCA	
     53975	    36	 100.0	    30	....................................	TATAAGCTTTATATAAGAAGTAGGGTTAGC	
     54041	    36	 100.0	    30	....................................	TAACGCTCGGCTTAGGAGCGAAAATGTACA	
     54107	    36	 100.0	    30	....................................	ATGGTTAACGAAGGCGCGGGCTGATGTAAT	
     54173	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.5	    30	GTTGTAGCTCCCTCTCTCATCTCGTAGTGTTACAAT	                              	       

# Left flank :   CGGCCCGGGCTTGGGCGTACGCATTTTGGGCGAAGTGAAAAAAGAATACGCCGACCTGCTGCGTCAAGCCGACGACATCTTTATCCAAGAATTGCGCAACACCACCGATGAAAACGGCACTTCATGGTACGACCTGACCAGCCAAGCATTCGCCGTATTCCTGCCGGTGAAATCCGTGGGCGTGATGGGCGATGGCCGCACCTACGATTATGTGGTGGCACTGCGCGCCGTCGTAACCAGCGACTTCATGACCGCACACTGGGCGGAGCTGCCGTATTCCCTGCTCGGCCGCGTGTCCAACCGCATCATCAACGAAGTCAAAGGCATCAACCGCGTGGTGTACGATGTAAGCGGCAAACCGCCCGCCACGATTGAGTGGGAATAAAATTTAATCAAAACTAAGGCCGTCTGTATATTTGCAGACGGCCTTTTCATTGCTGCTTTTTCAACAATATATTATTTTTAAAATCATAATGATATGGTGTTACTTAACCTTGCCA
# Right flank :  TAGCCAAGCGGGGAATCCTTGAAAAACAAGGGTTCTCCGCTTTATTTCTGCCTAAAATTCCGTTTTAAAACAGCAAAAGCTGGTCGGCATTCACCTTTTTTTCACGCGTTTTCGGCTCGCCAATCAGCATCACCATACCCGCATATTGCTTTTCCGTTACCTCCAAATAACGCACCTGCCCTTCTTCGGGCAGTTGTTGCAGCAGCCTTTTGTGGTGTTTTTGCAACGCATCGCGCCCGCGAACGATGCGCGAATATACCGAAAGTTGCAGCATCTGGTAGCCGTCTTTCTGCAAAAATTTGCGGAACCGGTTGGCTGCCTTGCGCTTGGCAGCGGTGGTAACGGGCAGGTCGAAAAAGACGATTAAGCGCATAAATTGGGCCTCACTCATAATCATGCTCTTTCAGAGGCAGCATTTGCGGCAGCTTCAGCAGTTTGGGATTGTTTTCGGTTAATGCCGTCTGCAAAGACTGTATGGTGCGGTCGATCGCGGCCAGCAG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTCTCTCATCTCGTAGTGTTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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