Array 1 50098-50432 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHR01000007.1 Aerococcus urinae strain UMB0080 ERR1203590.17957_1_2.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 50098 30 100.0 31 .............................. TGTAGGTGGAGAGAAAATGAGCAAAATTGTA 50159 30 100.0 31 .............................. ACGCTACTCTAGTCTTAAAGGTGGACGACAT 50220 30 100.0 31 .............................. TGTTGGAAGGTATATTTAGACAACTAATAAA 50281 30 96.7 31 ............................C. ACCGCGTTATACGTGCTGCTGCCTTCTGATT 50342 30 100.0 31 .............................. TGATAAGCACAAACCCATTACAAGATTCATT 50403 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 6 30 98.9 31 CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Left flank : GCAAATTGCTATGTGCTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGAAATCTGATCAAATTACAAATTCACCGGATTATTGAGTCAGAGTATGATTTTGGCCGGCGTGACAATGCCTTATTATGTCCGCACTGTCAGGAACAGCTGGGCTCTTTGAGTGAACATAAGGGCCGGCCTTGTTATTTCTTGCACCGAGGACGAGTACAGACCAAACGCTTGCAGCATTATAAAAGCTAGCCAAGGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGGAATTGGGTAGGTTAGGAATGACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : CAGCAAGGCGAATTAGCTTTTAACGAAAAAGGCTTTTTCCCGCATTTATTTGGAAATTAATAATATTTGATTTAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGCTTTGATCAATATTTCTTTTGAAATCATCAGCTCGATTTATCCAAGCCTTGGGGTGGACATGCTATAATATAAAAGTAAAATAACTTTATCATCCTTTCCTGTGATAGGAGGATTTAAAGCAAGTAGGTATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACTCGGAGTGTTTTCATATCTGGGTCGAGAACGCAAAACCAATTATCCCAAGAAGTACTAGATTCCATTGACGCAATTATTGACCAAGGCATAAAGATTAACCTAGGGGATTCCAACAAGGGGGTCGATAAGGAAGTGGCTGACTTGCTTCGACTTGAAAATTATCAGGCGGTTGAAATCTTCACCATTAATCAAAAGCCACGGATTGCCATTGAAAAGGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 26297-27059 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHR01000019.1 Aerococcus urinae strain UMB0080 ERR1203590.17957_1_2.19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 26297 32 100.0 34 ................................ CTTTTGGTACCTCTGCGATCGCCTCATCATGGAC 26363 32 100.0 34 ................................ AACGCTGATCCGTAGGTTAACCCCTCGTCTCTAC 26429 32 100.0 34 ................................ AATAACAACTGGTTTCTTTCTGTATTTCATTAAC 26495 32 100.0 38 ................................ ATAATATGGGCTTAGATTTTAAAGAAGGTAGTGTGAGT 26565 32 100.0 35 ................................ CATTTTTCTGATCATGTCGTAGATCTCTTGTTTGC 26632 32 100.0 34 ................................ CGCAATATGCGAATGGTATTGGGTTTTCTACCGG 26698 32 96.9 34 ..........A..................... AAGTGGACTAACCGCCATCTTTCTTTAGGGCCGT 26764 32 96.9 35 ..........A..................... AGCTCCAATTTGTCGCCATGGACTAAATTGGCCGG 26831 32 96.9 34 ..........A..................... AGCTCCAATTTGTCGCCATGGACTAAATTGGCCG 26897 32 96.9 33 ..........A..................... CCTCCTACTTAAACTTCTGATCATCCATATATC 26962 32 96.9 34 ..........A..................... TAAGAATTGTTGAAACCATGAGTGAAATTCGCTT 27028 32 84.4 0 .......A....A...A...AC.......... | ========== ====== ====== ====== ================================ ====================================== ================== 12 32 97.4 35 GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Left flank : AGCTATTGGCAAGGTATATCCGTGGAGACATTGACTACTATCCGGCATTTATTAGTTAAAGGTGATTTAAGATGATGGTGTTAATTACTTATGATGTGAATACCGAAAGTAAGGCTGGCCAGAAACGCTTACGTAAGGTGGCTAAGGTCTGTGTTGATTATGGTCAACGCGTTCAAAATTCCGTTTTTGAATGTAGCTTAGATCCTGGGCAATTGGCACTCGTTAAATCGAAATTAGATGGTATCATAGATAGTGAAGTCGACTCGATTCGTTTCTATAATCTGGGTAAGAATTGGGATCATCGAGTACAAACCTTAGGACGGGACGATACCTATCACCCTGAAAAGGATGTCTTACTCTTATAACGAACCCCAAGCACACAGAATTGTATCGGTAGCTTCGTTTGTATTTTGGACTCAAAAATACAATATAAGTGATTATTTTGCTCTTTTTATAACACTTATATTATGAAAATATAGTGAAAACTTGTAAAAAGAGCT # Right flank : TTGTAATTGCTGATAGTATCAACATTAGTAACGAGGGTTCAGACTTTTTGTCTGTATGGATTGAATTATCAGTTAACGAAAAAGCGATACGTTTTTCTTGTCGCAATTTATACACTTATGTAGGTAGAAATTAATATGCGGCTAAGTATTACAAATATGGTCCAAAGTTGTAGGCTTTCTTTCAGCAAAGATTGACTATTTATACCAAGCAATCAGCCCTTGCCAGCTCCTCCATCAGCGAGCTCAACAAGGGCTTTTTCTATTACATCGACTCATAAAAGCACTAAAAAAATTAACCCAATCCCAAAAATAAATCACAGCCCCACTAAAACCGATCATTCTTGATCCTTTTTCCTAAGTTGACAGTAGTCCTTGGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Alternate repeat : GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA //