Array 1 3383-1829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000025.1 Nocardia farcinica strain N-3 NODE_25_length_13867_cov_42.505604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3382 29 93.1 32 .......G..............C...... AAGAAATATCGAGTCGCCCTGTACTCGACCAT 3321 29 100.0 32 ............................. CGGTTGCGCGCCATGCAGAAGGGCGACGTGGT 3260 29 96.6 32 ............................A CCACCTGCGCCTGCTTGACCTCGACGCCGTGG 3199 29 100.0 32 ............................. CCCGGACCCGCCGAAGGCCATACCGATACCCG 3138 29 96.6 32 ......A...................... GGGACTTTACTGGTTTCGCTTTCGATCCCCGT 3077 29 100.0 32 ............................. GAGTTTCGCGGGAAGCAAGCTGTGCTCGTAGT 3016 29 100.0 32 ............................. ACGTACGGGCCACCCAGCGGATCCACGCTGAC 2955 29 100.0 32 ............................. GGTCGATCGGGGGTGGGTGGGGGTGCTGGTGA 2894 29 100.0 32 ............................. GGCAACGGCACCGGCGAGAACTTCACCGGCAT 2833 29 100.0 32 ............................. CGCCGCAGCCTCCATACGGCAAGCCGCCCCAG 2772 29 100.0 32 ............................. CCATCGGCAGGGTCGCAGCCCTCGCAGTCAGG 2711 29 100.0 32 ............................. CCCCACCGGTCGGACTCGAGCGCTTCGGGGTG 2650 29 100.0 32 ............................. CCGAGCGCCCGCAGGACAGCGAGGTAAAACGG 2589 29 100.0 32 ............................. GCACACCCCTCCACCTCGAGGTCCGGGTGCAG 2528 29 100.0 32 ............................. GAATCGGCACGGTCGGGGTGGTCGAAGGTCAG 2467 29 100.0 32 ............................. CAGATCGAGGTCGGGTCGATGGGCAGCGCCGC 2406 29 100.0 32 ............................. GACCGGATGGCCTTGAACGCCGCGTCCTCGCA 2345 29 96.6 32 ............................A CAGGGTCTAGGTACAGCTGGCGTACTGCCTCC 2284 29 100.0 32 ............................. TCGCTGGCCGCGTGGTGCCCGCGCTGGTGGGA 2223 29 96.6 32 ..............A.............. ACCTTCCAGCGCCTGGAGAAGGGAGAGCGCAC 2162 29 96.6 32 ........................A.... GAGCAGGTACTCGACGTGCTCGGGCTGCGGGT 2101 29 100.0 32 ............................. AGTGTGGTCGTGCAGCCTGCCGGACCAGCGGG 2040 29 100.0 32 ............................. CGCGTCGTGCTCGGCGGCTACAGCCAGGGCGC 1979 29 100.0 32 ............................. GGGTAGACGCCGTCGGCGTCGAGATCGATGTC 1918 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 1857 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.5 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : AAATCCCCCACACCGCTGAACCAGAAACCACCACCGCTCACGACATACGCATCATCGCCCGCAACCGAGTCGCCTTCGGCAAGAAGAAGCACAACCGACAGGCCGGGACCGTCACCCTCCACACAGCTACCTATGAAGGCAGACTCGAAGTAACCGACCCCGAACGCCTCACCACAGCCCTGCTCAACGGAATCGGACCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGAGGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCACCCGCAGAGCAAAGTGAATGAAAAACGCGCCCCTCGCGAATATAACAGCAGGTCAGGAAGT # Right flank : TGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTCAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCCCCGACGAGGCATTGAGCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATCCGCTAGCCGCCGCCACTGGCCAGCGTGCTCAACTGCGCCCCTAATTGGCCAGTCCGGGGTTCGCATAGCCGACCTCGTACGCGCGATCGAGGAAAATGGCGACTTTGGAGGACAAGCACGCGATCAGCGCGATCGCCTCGCCTCAGTTGGACTGATGCGGGTGGGCCCGAACACTTCTCAGGCCGCACTTCGCCCGGTATGGGAGAGGCCGATCGCCTCTGCCAACGGCACGGTGGCCGCCATCGGGCACGACCTGGAGCGTATCGACAGCGACCTCCAGGTCATCAGGAGCGATACCCCAGCCTTGCGACGACAGCTGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1353-173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000010.1 Nocardia farcinica strain N-3 NODE_10_length_187643_cov_47.233228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1352 28 100.0 33 ............................ CACCGCGGTCTTGGCCGACGCCATCTACAACGA 1291 28 100.0 33 ............................ CCCGACGTACGCGGGCCTGCGGACGTATCAGGG 1230 28 100.0 33 ............................ CGACCTCGGAGTCTCGACCTCGACGATCAAGCG 1169 28 100.0 33 ............................ CGGCAGCACCAACCCGTTGACCTCCGGCGGGAT 1108 28 100.0 33 ............................ CGATCGCCGCGACGACCCACCATGACGCCCGAC 1047 28 100.0 33 ............................ CAGCGATGTCGAGGCCTACGTGCGGATCTCGTC 986 28 100.0 33 ............................ CGCCGCGCCCTGCCCGACTTCACCGACGTCGCG 925 28 100.0 33 ............................ CCCTTGGTTAACAAGGGGATTTGGTACGGGCCG 864 28 100.0 33 ............................ CGCGTTGATGATCTGGAACGGGCGCACGTTCGA 803 28 100.0 33 ............................ CTTCAAGAACATCGCCCTGTCCTACAAGGACGT 742 28 100.0 33 ............................ CCCTGCGAGCGACGACCGAGTCCCGCAGCAGCA 681 28 100.0 33 ............................ CCAACCCCAGGTGCCCGGCACGCGGGTCGACCA 620 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 559 28 100.0 33 ............................ CCGACATCGAATATGGTGATTTACTGCGACCCA 498 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 437 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 376 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 315 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 254 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [201] 200 27 85.7 0 ........A.T....A....-....... | A [191] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGCGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : CGCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4294-3595 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000010.1 Nocardia farcinica strain N-3 NODE_10_length_187643_cov_47.233228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4293 28 100.0 33 ............................ CGCCGGGATTTGATCGACAGCGAGATCCTCGAC 4232 28 100.0 33 ............................ CTTGCGGATGCTGTGCGCGAAGTCGACGGGGTC 4171 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 4110 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 4049 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 3988 28 100.0 33 ............................ CGACGGCACCGTGCTGGAATTCGGGGAGTACAC 3927 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 3866 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 3805 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 3744 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 3683 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 3622 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : TCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 866840-865531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000002.1 Nocardia farcinica strain N-3 NODE_2_length_994970_cov_46.344939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 866839 28 100.0 33 ............................ CGCCTGGACGAGCGTTTCCATCACTACCTGCTG 866778 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 866717 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 866656 28 100.0 33 ............................ CTGCTCGATTGCGGCGTACCGCAGATGGGCGGT 866595 28 100.0 33 ............................ CAGCGAGCCGATCCTGACCAGGATGTCGCCAGT 866534 28 100.0 33 ............................ CTCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 866473 28 100.0 33 ............................ CTCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 866412 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 866351 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 866290 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 866229 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 866168 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 866107 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 866046 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 865985 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 865924 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 865863 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 865802 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 865741 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 865680 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 865619 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 865558 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTTCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCGTTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 983745-980561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000002.1 Nocardia farcinica strain N-3 NODE_2_length_994970_cov_46.344939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 983744 28 100.0 33 ............................ CTGCCGGTGCGCGAGCGCGTGAAGTCCCTCGGC 983683 28 100.0 33 ............................ CGCCGATCATTCTCGACGCCGGGCAGTGCTGGG 983622 28 100.0 33 ............................ CGCCCAGCTGCCTTCGGGCTTGTAGCCGCCGTT 983561 28 100.0 33 ............................ CCCCTGTGAGCCAGCTAACTTTTCGCGATTACC 983500 28 100.0 33 ............................ CTGCTCCTCGCTCATGCCGGCCGCGATCGCCTT 983439 28 100.0 33 ............................ CTTCAAGGACATCGCCCTGTCCTACAAGGACGT 983378 28 100.0 33 ............................ CATGTGCACTCGCGCCGCCCTGTAAGCGGCCAA 983317 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 983255 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 983194 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 983133 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 983072 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 983011 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 982950 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 982889 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 982828 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 982767 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 982706 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 982645 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 982584 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 982523 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 982462 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 982401 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 982340 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 982279 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 982218 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 982157 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 982096 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 982035 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 981974 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 981914 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 981853 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 981792 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 981731 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 981670 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 981609 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 981548 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 981487 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 981426 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 981365 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 981304 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 981242 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 981181 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 981120 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 981059 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 980997 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 980936 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 980876 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 980815 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 980589 28 71.4 0 ...G..TG.....CG.TC..A....... | G [980562] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 50 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCCA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 994801-992929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000002.1 Nocardia farcinica strain N-3 NODE_2_length_994970_cov_46.344939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 994800 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 994739 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 994678 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 994617 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 994556 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 994495 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 994434 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 994373 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 994312 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 994251 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 994190 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 994129 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 994068 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCAGACGG 994007 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 993946 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 993885 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 993824 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 993763 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 993702 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 993641 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 993580 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 993519 29 100.0 32 ............................. CAGCCCTTCACGGTGTCGATCGCGCTGCCGAG 993458 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 993397 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 993336 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 993275 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 993214 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 993153 28 96.6 32 .................-........... CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 993093 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 993032 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 992956 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= =============================================== ================== 31 29 98.7 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CTACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGG # Right flank : GGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCACTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85-235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000445.1 Nocardia farcinica strain N-3 NODE_492_length_282_cov_0.593548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 146 29 96.6 32 ..............T.............. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 207 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CAGGTCGAGGCGCTGCGGCGGGCGGTGCCCGTGGTCGCCCAGATCAAGGACAACGCCACCCGCAAGGCGAACTCGTCGGTCACGG # Right flank : TGCTCGATTGCGGCGTACCGCAGATGGGCGGTGTGCTCCCCGCGCAC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 225-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000462.1 Nocardia farcinica strain N-3 NODE_511_length_280_cov_0.300654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 224 36 100.0 38 .................................... ATGGCTCCACCACGTTGGAGGTTTGTCGAGAATACCGG 150 36 100.0 36 .................................... TGAAAGTGCCCGTGCTTCCAGAGGAAATAGCCCAGC 78 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 100.0 38 CTTTCCGCGTTCGAAAGAACGCGGCCTCATTGAAGC # Left flank : AACGCGGCCTCATTGAAGCGGGAACTATGGCGACTTCGTGACATGCCAGAAGGGC # Right flank : CTTGGAATTGCAAGCGGTGGACCGTGCTGACGTGCGTCTTTCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGCGTTCGAAAGAACGCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 113745-112190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQZ010000007.1 Nocardia farcinica strain N-3 NODE_7_length_282801_cov_48.876190, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113744 29 100.0 32 ............................. ACCGCCGCCGTCAACGGCTCCGGCCCCCCGTC 113683 29 100.0 32 ............................. CGGCAGCGCGTCTACGCGATACTCGGCCGCGG 113622 29 100.0 32 ............................. CACCGACCCGCTGCCCGACCCGCCGAAGGTTG 113561 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 113500 29 100.0 32 ............................. CGCAGTCCATTCCGCGCGATCCCGCGCAGCAA 113439 29 100.0 32 ............................. ACCGCGGGCGCTGCCGGGGATCTCGTCGTCGA 113378 29 100.0 32 ............................. TCAGCCTTGATCTCTTCGCACTGCTCCCTTGC 113317 29 100.0 32 ............................. CGGAAGCGGGTCCGCCACCGCGGGATTCCCGG 113256 29 100.0 32 ............................. GATTGCACGATGCCGTCCCGCCCGATTCCCTC 113195 29 100.0 32 ............................. GCCGCATCGTCCAGGCCCGCGCCGAGGACCTT 113134 29 100.0 32 ............................. GCCTCGCCGAGATCGCCGAGCAGCTGCGCATC 113073 29 100.0 32 ............................. ATCACGCCCGTGCCCTCGGCGGCGGGCAGGAA 113012 29 100.0 32 ............................. TCTCCGGCGCGACGCACCACCGTGGCCACGTC 112951 29 100.0 32 ............................. TGGCCGCGCCAGCACTCGCGGTGGTGGCTGAT 112890 29 100.0 32 ............................. CGGCGACCGAAATCCTCGCTCCGTCCAGCGTT 112829 29 100.0 32 ............................. TTCCGCATTGATAGATTCCAGGAACGCGAACT 112768 29 100.0 33 ............................. CGCCTGCGCAAGCGCGCCGCCGATCTCGTCGGC 112706 29 100.0 32 ............................. ACCGACACCCCGCCGGGCCGAATCCGCACCAG 112645 29 100.0 32 ............................. GCCAGCGCCAGCAGTCCGCCCATCACGCCGCT 112584 29 100.0 32 ............................. CGGGAATCGAGCGGCCGTTGTGGAAGGATCGG 112523 29 100.0 32 ............................. TCACCATCGCCACGCTCACGATGCCGGTGCTG 112462 29 100.0 32 ............................. TCGTGGCTGGCTGCGTAGCGGGCGGTGTGGGT 112401 29 100.0 32 ............................. GCTTCGGCCTCGCAGCTCGCTGCCGCCGAGGA 112340 29 100.0 32 ............................. TGCTCGACCCCGGTGCGCGTGAGGCACCAGAC 112279 29 100.0 32 ............................. CAATGTCAGGTTTTCCAACATTGGACCGCCCA 112218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGAGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGGGAGGTACATCGGTGAAAAGTGAATGAAAAATGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCGATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCCTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCACGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //