Array 1 97968-99948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZH01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST2287 ST2287_00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97968 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98029 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98090 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98151 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98212 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98273 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98334 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98395 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98456 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98517 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98578 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98639 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98700 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98761 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98822 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98883 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98944 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99005 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99066 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99127 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99188 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99249 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99310 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99371 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99433 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99494 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99555 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99616 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99677 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99738 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99799 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99860 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99921 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116081-117556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRZH01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST2287 ST2287_00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116081 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116142 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116203 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116264 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116325 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116386 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116447 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116508 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116569 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116630 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116691 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116752 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116813 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116874 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116935 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116996 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117058 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 117119 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [117161] 117161 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117222 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117283 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117344 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117405 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117466 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117527 29 96.6 0 A............................ | A [117553] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //