Array 1 16607-16969 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QXNE01000041.1 Rodentibacter pneumotropicus strain 602_16 contig_41, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     16607	    36	  80.6	    30	AA.C.GT.A.T.........................	CGAAATATATGCGGGTTGGTGTAGAGCAGG	
     16673	    36	 100.0	    30	....................................	GAGCTTTCCCTCCCTATGGTCGGGTCGGGC	
     16739	    36	 100.0	    27	....................................	AAAGCTCCGGAAGGTAAAGTGCTTGTT   	
     16802	    36	 100.0	    30	....................................	TACTCTAGTTAGCTTTCTAAAGTACACACA	
     16868	    36	 100.0	    30	....................................	TTATAAACAATTCCAGCTTACAGTGATGGC	
     16934	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         6	    36	  96.8	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   GTATCATGATACTTCTGAAATTTTTACCGGTGATTTACCGACCCCCATAAAATATTTCAACCCTGAAATTACCCAAGCCTATAAACAGATTGAGAGTGCAGCAGAACTCCATTTGATCAGCCTTCTCCCTCAAGAATTACAAGAAGATTTCGCTTCTTACCTAGACAGCGAAACTTTTTCGGATGAAGAGAAGCATCTAGTCAAACAAGCCGACCTCATTTGTGCCTATATTAAAGCCCAGTTTGAACTGGATAATGGCAATCAAGAATTTAAAACCGCTAAAACCAGACTTGAAGCCCTTATGCAACAGTGGCACAGCAAAGAAATGGATTATTTCTTACAGGTATTTATGCCAAGTTTTGGACGCTCTTTGGATGAGATTGCGTTGTGATTTAGAGAAAAGTGCGGTTGAGAATGAGGCTGTTTTTGATACTTTATTTAATAAGTAGAAAAGATTTTGATGTGAAGAGTCAAATTTTCATCAACTTGAATACTTTTAA
# Right flank :  TATGGAGAGCAAAAAGCCTTGAACTGTAAGGGTCCAAGGCTTTTTTATCAAAAGAAAAAACAGTTTAAAACAATAGAAGTTGATTAGAATTGACCTTTTTTTCTTGTAATTTTTTCTCTCCAACTAAAATTTCCATATTAGCAAATTGCTTTTCTGTGATAGCAATGCAGCGAATTGAACCTTCTTCCGGTAAATTTGCGACTAATCTTTTATGATGCTTTTCCATTGAATCTCTTCCTCTTACAATTCTTGTGTAAATAGATAGTTGTAGCATTTGATATCCATCCTTAAGTAAAAATTGGCGGAATTGATTTGCTGCTCGCATTTTTGCCTTAGTAGTAACCGGTAAATCGAATAATACTATCATACGCATGAAAATATTCTCACTCATATTGATGCTCCGCAAGCGGTAGAATTTCCGGTAATTTTAGCAAATGGGCCTTTTTACTAATTAATGCAGCTTGCAAAGTGCCAACCATTCTATCAATTGCGGTTAACGT

# Questionable array : NO	 Score: 6.07
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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