Array 1 52962-51211 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRC01000001.1 Deinococcus metallilatus strain MA1002-m5 497.DSPMA1002.3_contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 52961 37 100.0 35 ..................................... TTCGTCCTGATCGAGGTTCGCGGCGCTCTCTTCCA 52889 37 100.0 36 ..................................... CTTCCCGCCCGTGGTGTGCAGGTGGGCGCGGTTCAC 52816 37 100.0 35 ..................................... TAGGTAGTCTCCCGGCGTGTACAGGTGCCCGGAAG 52744 37 100.0 36 ..................................... CGGCGCAGGCCAGAGCGGGGGACCAGGGAAGCTGGG 52671 37 100.0 34 ..................................... GCGCCCCGCCTCCAGCAGAAACAGGCGGCCCGGG 52600 37 100.0 34 ..................................... TTGGGCGTGTTCGGCGGCGTGGTAGGGCTTGCAC 52529 37 100.0 36 ..................................... CGGCACATACAGGAACACGCGCGGCACGCCCGGCAC 52456 37 100.0 34 ..................................... CGCAAACAATTACTCGGCCTTCCGCTGATCCCCG 52385 37 100.0 33 ..................................... TGGTAGGCGCCGAGCTGCGCCTGATAAATCGCC 52315 37 100.0 33 ..................................... GGGTGGATCGACAACCCGACCAACTCCAGCCGG 52245 37 100.0 34 ..................................... CCGAACAGTGCCCGTTCCAGCTCCACTCGCAGAC 52174 37 100.0 34 ..................................... GTGGGCTGATTCTCCACGTAGTCGCTGAACCACA 52103 37 100.0 37 ..................................... CGAACTCACGCCGGACGACGGGGAAGCATACGACTAC 52029 37 100.0 32 ..................................... TGCTTCGGGACGGCGCTTCTCGCCTCGGTGGT 51960 37 100.0 36 ..................................... ATGGGCGTTCTGTGCGGCCTGTTTCGCGGCGGCATT 51887 37 100.0 34 ..................................... GCCTCAAGAATCATGCCCGCCAGGGTGCAGCCGC 51816 37 100.0 36 ..................................... CTGCTGGCCCTGACGCCCGACCCGCAGCCCCTCCCC 51743 37 100.0 36 ..................................... AGTGCGAGCGCGGCAATGGCAATCTTCCCTGTCCTG 51670 37 100.0 33 ..................................... GCCGTGGACCTCCACCCGGAAGGGGCCGGGCCC 51600 37 100.0 32 ..................................... GCCCCTGGCGGACGTGAACGCCAACAACCGCG 51531 37 100.0 34 ..................................... GCCGCACGCTGCGCCCGTCGCTCAGCTTGAGGTT 51460 37 100.0 35 ..................................... ACGTTAGAAAGGTAGGTTGCAATTTGTTTCACGTG 51388 37 100.0 34 ..................................... CTCCGGGCACGGCTCCGCGAATTCCACGTCCAGC 51317 37 100.0 34 ..................................... ATGAGCAACACGCACCGTGTCAACGCCAAACCGA 51246 36 97.3 0 ......................-.............. | ========== ====== ====== ====== ===================================== ===================================== ================== 25 37 99.9 34 GTTGCAGCCTGCCTTTAGGTGGGCTGAGGATTGAAAC # Left flank : CCATCCCGCACCCCACGATTGTAGAAGTCGGCGGGAGCGACATGTCCCCGCCGACCTCGACCCAGGAGCCGCCTATCCGCCGATGGGCCAGACCACCTCGTTCAGCGGGGTTACCCCCGTGTTCGCCCCGGAGGTATCCGCCGCCCAGGCACCCGTTCCACCCCACAGCAACAGCAAGCTCAACAACAGGTTTCGCATTCATTCCTCCCTATCCCCAGGCACGGAAAAACCGCGTTGGGACGCACTTGAACGCGGCCATCGCGTTCTGTCGGGGAGAATGCGGGGCCAGCCCGACACTGGCTGACGGGAGGAAAAACAGGGCGCGAACCTCCTGCTCCGTGGAGATCAGGGGAGGTTCGCGTGATGTGGCAGAAGTCCTGCTGGACGCCCGAGAGGCGATTGTGGCTCTGCGGTCAGGTCGGCAGGAAGGTCAGTGGCCCTTGTGGTTCGCGCCGTCCAACGTCAACCTTGCGTGTTGCACGAAAAGCGGGCACACTACC # Right flank : CCCTGCCTCCATGGCGAGTGGCCGCCGGAGGCTCCCGTTGCGGCCTGCCCGCAGCAAGCTCCAGGCTGAAACTTAACAGAACAGCAATGCTAGACGGCTTTTCCCTCAACTCCTGAGCGGCGCGGGGCGGCACCATGACCTATGGTTCTCCGCGCCTTTGCTGCATGGCCGCTGGCGCTGTTGCTCCTGGCGGGCCTCGGGGGTGCCCTGCCCGCCAGTATCACCCTCAAGAACATCCGCCACGAACCCCAGGGACCGGACAACTGCGCGCCGGTCACGGCGCTCACGGTGCTGGGCTACTACGGCACGCGGGTGACGCAGGCCCAGGCGGCCCGTGCGCTGAAGGACGGGCCGCGTGATCCTCAGGTCACCAGTCTGGAACTCGCCGCCTATCTGGGCCGCTTCGGGTTGCGGAGCGTGATCCGGTACGCGGGGACGCCTGACCTGCTGCGGGACCTGCTGGCGCGGGGGATTCCGGTGGTCCTGCAACAGCGCCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTGCCTTTAGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 2 64608-65434 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRC01000001.1 Deinococcus metallilatus strain MA1002-m5 497.DSPMA1002.3_contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 64608 37 100.0 37 ..................................... ACTCTCGCTGTTGGTGGCCTGTTTGGGCTGCTGCGCG 64682 37 100.0 35 ..................................... TGGTGTGTGCAGGGTGACGGGCTGGGGGTGACGCT 64754 37 100.0 35 ..................................... TGGCCGGGTAGTGCGCGAAGGTCGCGCCGGTTCCC 64826 37 100.0 35 ..................................... AAGTTCATGCTGGCGAAGGCGCCCGACACCTGGGT 64898 37 100.0 33 ..................................... GTCCTCGACGCGCTTGGGGCCGACCGCGAGCGC 64968 37 100.0 34 ..................................... GGGCATCGGCACCTCTGAGGGGAGTGTGGGGGCG 65039 37 100.0 34 ..................................... AATAAGTCAGCAGCGCGCTGAGCTGCGCCCCTTG 65110 37 100.0 36 ..................................... AGGACGCTGGGCAGGCCACCTTCTACCGTGCTCCCA 65183 37 100.0 35 ..................................... GCAACAAGGCAGGAGCGAACCATGAGCCTCACCGC 65255 37 100.0 34 ..................................... GCTTTCTCTGCAGGTGACGGCGTACCCCGGCACG 65326 37 100.0 35 ..................................... TTGCCGATGTTGGTGCCGGACTTGCTGCGAGTGAC 65398 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 100.0 35 GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CCTTACCTGCACCGTTGAGGGCTGCATGATCGACCTTCTGATCACCTACGACGTTTCTACCGAGACTTCCGCCGGACGCAAACGCCTGCGCCGCGTCGCCAAAGTCTGTGTGGCGCACGGCCAGCGCGTGCAGAACAGCGTGTTCGAGGTCAGCGTCACCGACGTGCAGCTCCTCGCGCTGCGCGACAGACTGCTTCAGGAAATGGACCCGACCGAGGACAGTATCCGCATTTACCGCCTCCGCCAGCCGCGCGAGAAGTTCGTGGAGGCCTTCGGACGCGACCAGTACCGCGACCTCAGCGCGCCCCTCATCCTGTAAAGCCTGCGCGAACTCCCTGTGACAAACAACAGCGGGGGAGGTTCGCGCGCTCCAAAAGTCCGGCCAGGACGCGCCGCATGACAACGATAATGGGCGCCGGAAGCCGCCGCTTGCCGCCAGGAGCGAGGTTCGCGCAGAATACGAAATGGAACGCGGGCTGGAAGGCATTCAGTTCGTATCC # Right flank : CCATAATAGGTGTTACGGGGAAGGCATCCCAGACCGGAGCAGCCTCCAACAACCCTCCAGCTCCGGTGGCCGCAAGGGAGATCCGGGAATCAGGCTAGTATGCGATACTTGCATTTTATGTAGAAAGCGCATAAACTCCTCTTGGTATGAATGTGCTTGCCAGACGGACTCTGCTCAAATTTGCCGAGCAGTACCCTGAAGCCCGCGAAGCTCTCCTCGCCTGGGAAACCCTGGCGAGAAAAAAGAACTTCGCCTCGTTCGCGGAAGTGCAAGAAGCCTTCGCTACGGCCAGTTGGGTCGGCCCCGACTACGTGGTGTTCAACATCAAGGGCAACCACTTCCGCCTGATCACTACCGTGGATTTCACTTACAAGATGATCCGGGTCAAGGAGTTCATGAGGCACTCGGATTACGACAAGTGGAAGCCCTGAACCGAACTGAATGCCTGGCCCGATCGGCGGGCCACCCCCTCGGGGGAGGTGAACTGAATGTCTCTCAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCCTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 53736-54329 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRC01000016.1 Deinococcus metallilatus strain MA1002-m5 497.DSPMA1002.3_contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 53736 37 100.0 33 ..................................... ACGCAGGGCAGCGGCCTGGACAGCAACGGCCTC 53806 37 100.0 34 ..................................... CACCACGTCGAAGGTGGGCAGGACGTGGTTCATG 53877 37 100.0 20 ..................................... GGCGAGGAACGCGAATGCGA Deletion [53934] 53934 37 97.3 36 .G................................... TGTTCCGGGTGGTGCTGGTGGGAGTATGACAGCGTG 54007 37 100.0 36 ..................................... GGCTTGCTTGAGACGCTGGGCATAGGCCCGCCCGAA 54080 37 100.0 33 ..................................... GACGATCTCGCGGACAGCCATGACCGGGCGGCG 54150 37 100.0 34 ..................................... CGCCGCCAATCTGAACGGCATCGGCAATCTGGCC 54221 37 100.0 35 ..................................... GGCACCGGCTGGGGCGAGGACCTGGCTGCCGCGCA 54293 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 99.7 33 GTTGCAGCCTACCTTCGGGTGGGCTGAGGATTGAAAC # Left flank : GCGCTGGCCGGTGCCCACGCCGCCGCCTTCAGGGTCGTTGCCGCTCTCGTAGGCCATCAGCTTGGTGCGTGTCGCCTTTTTCGGCCCCAGCAGGGCACTGGCGACCACCGCCAGGACGCCGATCCCCAGCGCGACCAGCAGCATGATCACGAAATTCGCGTACTCGATGGGAGTCTCCCTTCTGCCCTTGCCCCTCTCCCCATTCCCGCTCGTGAAAAAACGCACTAAGGGTTTGAAAAAAAGAGACGCGGACCTGACGAACCGAATCTGCAACCGACTTGTGGTACGCCACAGTTCTAGCACGAAAACACGTCTCAGGCGGTGCGCGAACCCGCTGTTACGTCAGAACCCCGTAGGGTTCGCGCTCGCCTGATCTGACGGTGCAGCACAGATAAGTTCACCTCCGGGCAGGGCTCGCGGGACGCTCCTCCCTTTCCGCCGAGAGGTTCGCGCTCTGCTACGCAAAAGTTGCTTCCTGGCCGCAAAAAGGCGACACTGGC # Right flank : CATTACCGTGCTCTGCGGCCCACTGCCGCACCTCTGCGTTGCAGCCTGCTTTCGGGGCTGCCCCCTTCCCTGCCTCAGTTCAGCAGTTCCACGAAGTCGTCGTCTTCGCTGTCCTGGGCGAGGGGCAGGGTGAAGATGAAGGTCGAGCCATGGCCGCGTTCGGACTCGGCCCAAATGTGGCCGCCGTGTTCCTCGACGGCCAGTTTGCAGAACGCCAGACCCATGCCGGTATCAAAGCGGCCGTGCAGGGTCAGGCGTGACTGCTCGAAGGCGGCAAACAGATTTGGAAGGTCATCGGCGGGGATGCCCTCACCGTCGTCGCGGACCGTGATCTGCGTTTCGTCCTCGGCCTGACGCACCTGAATCTGAATCAGGCCGCCGGTGGTGGTGTGTTTCAGGGCGTTGCTGATCAGGTTGGCGAAGATGCGGCGCAGGATGTCCGGGTCGGCGCGGGTAGGACTGAGGTTCGGGGCGACTTCCACACCGATGTGCCGGTCGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCTACCTTCGGGTGGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 116588-115644 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRC01000004.1 Deinococcus metallilatus strain MA1002-m5 497.DSPMA1002.3_contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116587 29 96.6 32 ............................T TTGCGTGTCCAGCACGGTCAGGCCGTCAAGGA 116526 29 100.0 32 ............................. CGAGGGAGGCTCCCTTGAAGCGTACCAAAAAC 116465 29 100.0 32 ............................. CAGGTTTCACCCGCCCGGTCCCCAGGAGCGAC 116404 29 100.0 32 ............................. CCCCGCTGCCCTATTTCCCCATTCATTAAGAC 116343 29 100.0 32 ............................. CCGCGCGTACTCGTCGGGGTAGGTGTCGGGGT 116282 29 100.0 32 ............................. TCCAGGTCAACGCGAACGGGCACGCTCAGGCC 116221 29 100.0 32 ............................. TCCCATATCGGTGTCCTTTGGCCCGGTGTTCG 116160 29 100.0 32 ............................. ACTGGAGTACGTCTCCCCCGCTTCCAACTGGG 116099 29 100.0 32 ............................. GGCGGCGCCCCCAGCGCCACGGCGGCATGGAT 116038 29 100.0 32 ............................. CTGTCGCCAGTTGCAATACCGCCACGGCATAC 115977 29 100.0 32 ............................. GCGCTCACAGGGCACCCCCTTCCGCCTGGGCC 115916 29 100.0 32 ............................. TGGGGCAATCCGCTTGACCAGGGAATTAATCC 115855 29 100.0 32 ............................. GCCAAGCCCGTCATCACCGCCGTGCGGGACGT 115794 29 100.0 32 ............................. TTGTCGCGCAGAACCTGGCCGTGAGCGCCGAC 115733 29 100.0 32 ............................. GATGCCTTGCAGGGCCGCGAGGACGCTGCCCA 115672 29 79.3 0 .....................CC.CTG.T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCACAGGTGTGGGGATGAACCG # Left flank : GCGGACCCCACCCCGGAAGGCCCGCGCCACGGCACGCGGCTGGGCGAGGAGAACTTGCGGATCGTGCCGGTCCATTGCATCCAGCGCGGCCTGTTCCTGGATGAATGTGCGAACCACCCCGCACAAACCGTCACCCTCAGAAAAGACGACTGGGACACGGCCCGTGCGGTGTATGCCCGCAGCCTCCAGGTGTCCCGGCACGACCTCCTGCGCCACATGGGCGCGCACCACGACCGGCACGGCGTCAGGCTCGGCACGGCGCACGTCGGCTGGGCCGCCCATCCCCTCCTGCGCGACGTCCAACCGCTGGTGCTTGTGAATGGCGAGGCCACGCTGGGAAACACTCGCGTCCGCCTTGACCCGGAACTCGGCCTGACCTATGAGCGGCTAGACTGAGTCGGGGTCTGTCCCCCGCGCCGCATGAAAATGTAAGCCAATTCCAGACCGTGTGGAGGGACTTGCGGCAGGGTGAGAAGCGGGCGACCTTGTGTTTCTGAAGT # Right flank : GGTCGCCTTCGATCCGTGGAAGCCGCGTGACCCGGTGGAGCGCTTCAACCTGGCACAGGAGCAGGTAGGCCGTCACTGCCCGCTCGGCATGACTCGGCAGCCAACTGCGCCCGCGTGTACCCCTGTTCGAGCCGTGCCCTGACCCAGGCCTCGTACCATTACAGCAGCCCGTGCCTGAGCAGCTCCTCTTCCGTCCAAACGTACCCTTGAGGCTCGCCCTGCCCCGTCATCCTGGTCGGTCCTCTGCGATATCGGTGAGGTCCATCGCCCGCAGCTCCGGAGCGAGGTACGCCGTCACGCCCACCACCAGCAGGGTGACGATGCCGCCCAGCCACACGCTGCGCGCGGTGCCCAGCCAGCTCGCGGCCAGCCCGCTCTCGAAGGCGCCCAGTTCGTTGCTGGCCCCGATGAACATGCTGCTCACCGCGCTCACCCGCCCGCGCATGTGGTCGGGCGCCTTCAGCCGCAGCGTCGCCTTGCGCACCACCATGCTGATGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129834-131021 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRC01000004.1 Deinococcus metallilatus strain MA1002-m5 497.DSPMA1002.3_contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129834 29 100.0 32 ............................. CTCTCTGGTTTCGACATCGCGGGCATCAACGG 129895 29 100.0 32 ............................. CTGCTGACATCGGCGTGCATGTCCATGTAGTT 129956 29 96.6 32 ............................T TTGAGGTATTCAGGGAACGTGGTGGAGTTCCC 130017 29 100.0 32 ............................. GGGCCTGCAAACACGCGGGTGGACCAGCACAC 130078 29 100.0 32 ............................. ACCTGGAGCTGATACAGCCGGGCGCCGGGAGT 130139 29 100.0 32 ............................. CTTGCGCCCCTGCCCCCCGTGTTCCCCCTCCG 130200 29 100.0 32 ............................. GCGTTGTTCCTGGGAGCTTTGGGGCTGTCCCC 130261 29 100.0 32 ............................. GCCAAATAAAAAGCCCCCGCGCCGCCAGCCGA 130322 29 100.0 32 ............................. TCCGACCGGTGCGGCATGTCCCAGAGGCAGAC 130383 29 100.0 32 ............................. GGTTTGTAATTGCAGAGAGCTTGCAGGACGTG 130444 29 100.0 32 ............................. GGCCGCCACTGGCAACTGCTCCCCCAGGAACA 130505 29 100.0 32 ............................. TACTGACATGATTACAGAGGCTATCGTGGGTG 130566 29 100.0 32 ............................. TCTTGCCCTTCCGGTCCCCCATTTCCCAGTCC 130627 29 100.0 32 ............................. ATCGACCGGACGCGGCCCCAGAGGAAGTAGAA 130688 29 100.0 32 ............................. CCAGTCGTGCGCCACAGCCTGGGGGCGGTAGG 130749 29 100.0 32 ............................. GCCATCGGGGAACACGACCTCGCCCGCAGGCT 130810 29 100.0 32 ............................. GCCCGCAGCACGGCGGACCTCGCGGGCGGCGG 130871 29 100.0 32 ............................. CGTACCGCCACGGTAGCCCAGCCGCACGGCGT 130932 29 100.0 32 ............................. CCGCGTGCGATTCGCCACCTCGGTGTCCTCCT 130993 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GTGTTCCCCACGTGCGTGGGGATGGACCG # Left flank : TCACCACCTCCTCGGCGGAGACGAACCGGACGCCGACGACCTCGCTCCGGGCGACCTCTGGGACCCGGAAGGCGACGTGCGCGGTGGGGTGAATCACGGATGATCGTCATGACGCTCGAAGCCGTGCCGCCCTCCCTGCGCGGCGAACTCAGCCGCTGGCTGCTGGAAGTGCAGCCGGGCGTCTATGTCGGCAACGCCTCCGCCCTGGTCCGTGACCTGCTGTGGGACAAGGTCGTGCAGCACGCCCGCACAGGTCGCTGCACCCAGCTCTACCGCGCGAACAACGAGCAGGGCTTTGCCGTCCGCCTGCACGGCGACCCGAAACGTCGCCTGGTCGAACTGGACGGCTTTCAACTCATTGCCGTCCGCAACGCCCGTCATGCAGAATTGGACCGGGAGTATGCCCCTCCCGAGGACGATGACAAATTGTGATGCGGATCCAGGGCTGAACAGGGGCCTTGGCAGGGGGTGAAGCGGGAGAAACATCGTGTTTCTAAAGT # Right flank : GAAGCCATCCCGCAAGTGCTTGCCCATAAGTTCGACCCGAATCTCCCGCAGCACTGTCCTCGCCCACTCGGGTGCTGTCTCGAGGAACGCCCCCAGGGCCTGATGCAGACGCCTCAGGGCCTCCAGACCCTGCTCCAGTTCTGCGGCTGACCCGGGGAGCGGCATCTGCGGGTCAGCCCTGCTGCCTGCACCCAGGAGTTCGCTCATGGGCAAAGCAGCAGCAACCCGCTGGTCATCGTAGATAGGCGTGTACACCTTCACTCTGAAGCTGGCGTCGGCATGTCCCAGCCAGTCCGCCACGACCTTGGGCGGCACGCCCGGCGGCTCAGTAGATTGGCCGCCGGGCGCCGCTGCACCGGCTTCGCCTTGGGGAGGGTACGCAGCAGCGCCCGCAGGACACGTTCCGCCTCCTCGTGGGTCTTGCAGCTCACCGACCGGCGGCGCTGCTTCCCAGTGACGGGGTCCCGGTAGCTCGCCAGTCCCCGGGCACTGACGACGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 338328-337782 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRC01000004.1 Deinococcus metallilatus strain MA1002-m5 497.DSPMA1002.3_contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 338327 37 97.3 35 .....................A............... GAGAGATGATCCTCGACGAGGCGCACCAGCTTCAC 338255 37 100.0 32 ..................................... TCTGGGGTATGAGCCTCAAGGCGTCCGAGGTG 338186 37 100.0 37 ..................................... TCGCATATCTCCAGCAGGCCGAGGAGCTGGCGCGGCT 338112 37 100.0 36 ..................................... CCCGGTGAGCGTGCTGTGGGAACTCGACCCGGTCCA 338039 37 97.3 40 ......................C.............. GTCAAGGGAAAGAACGTCTCCGGCCAGTACCGCGCCCTGT 337962 37 100.0 35 ..................................... GGCGTGGAGCCGTGGCCGGGGTCGAGGACGATGAT 337890 37 100.0 35 ..................................... GACCTGAACGCCCGCCAGCGCCTGTACCTGCTCGC 337818 37 94.6 0 G................T................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 98.7 36 CCTTCAACGACTTCCCCGATCGATAGGGGACTGAAAG # Left flank : TCCACGTTCACGCGGGGCTGGCCCTGTTCACCCGCGCCCACCACGTACTGCAAGGGATTGTTGCCGCCCTTCGTGACCACCAGTAGCACAGCGGCGGGCGTCACGTCGGTATAGTGCAGCGCCTGCTTCGCGCCGCCGCGCAGTTCCGCCAGAGCGCGAATCAAGGGGGCAATGCGCTGGGTGCGCGAACTCTGGCTGGAGGACGCATGGCAACTGCTCCAGCGGTACGGCCCGTGACCGCAAGAGGCGTGGCTGCCGTCAGGGTCCGGCGATTTGCGAGGTGTCCTGGTGGGCCTTTTCAGGGGAGGCCGCCTCTGAAGGCTCGCCCTGTCGGGGCTGGGCAGGCAAAGCCACGTCCTGCACGCACCGCAAACCGGCGAGTCCGCAGGTTCCCCTGGCTCTTGCGAACACCACCAGCGGGTAGAATGAATGCCGTCCTCCACAGCGAGGCGAGCCGCATGACAACTTTCACCCTCCCCGAAAAGAGCGAGAAATACGCG # Right flank : TGGCGCCGGTTGCAGGTTCAGGGCCGGGAGACAGGCTTCAACGACTTCCGAGCGTTAACACCGTGATGGCCATTGTTCGGCGCGCCTGAGTGGCCCAATCTAGCGCCCCAGAAAACGGTGCACCTCGCCCAGGCCGGTGGGGCCCAGCAGCACCTCACCGCTGGGCCGATGAAGCAGCATAGGGGTAGCCCGGATACCGTACGCCTGGGCGAGGGCCTCGAACTCGGCCGGGCGCTGCTGGCGATGCACGACGTCAATCTGTTCCGTGAATTGCCCCTTCAGGGGGCCAGCCAGCATTCGCTCCAGGCGCTCACACTGGGGGCAGTGCTCCTGGGTCAGCAAGACGAAGGGGCGCTCAGCCATGCGGCACCCGCTTGGCCTCGCCGGGAAAGCCGCCCGCCCACAGGTCCGCGATATCCCCGTCCGTCAGGGGTTCCACACTGATCTTGGCGTAGCTGCTGCCCTTGGCGCTGAAGAAGTCATGGGTGGTGCCGCGCGCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGACTTCCCCGATCGATAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //