Array 1 2729213-2726599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046478.1 Listeria monocytogenes strain LM928 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2729212 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 2729146 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 2729080 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 2729014 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 2728948 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 2728882 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 2728816 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 2728750 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 2728683 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 2728617 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 2728551 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 2728485 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 2728419 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 2728353 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 2728287 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 2728221 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 2728155 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 2728089 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 2728023 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 2727957 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 2727891 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 2727825 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 2727759 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 2727693 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 2727627 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 2727561 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 2727495 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 2727429 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 2727363 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 2727297 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 2727231 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 2727165 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 2727099 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 2727033 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 2726967 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 2726901 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 2726835 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 2726769 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 2726703 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 2726637 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2726602,2726605,2726610] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //