Array 1 434658-426490 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSC01000013.1 Sulfolobus acidocaldarius strain NG05B_C06_06 NG05B_C06_06_scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 434657 24 100.0 35 ........................ AGCTCTTTCGCACTGTTATTTTACAATTTACACGT 434598 24 100.0 34 ........................ GCTTGTTGATTTGGGCCCATGCGAGGAGGATTAA 434540 24 100.0 38 ........................ TGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAA 434478 24 100.0 37 ........................ AAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT 434417 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 434355 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 434293 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 434237 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 434174 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 434116 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 434055 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 433989 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 433929 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 433866 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 433807 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 433747 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 433688 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 433629 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 433569 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 433508 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 433447 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 433388 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 433330 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 433268 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 433209 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 433151 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 433092 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 433032 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 432973 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 432914 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 432855 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 432795 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 432735 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 432675 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 432615 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 432557 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 432499 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 432441 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 432382 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 432323 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 432262 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 432204 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 432145 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 432086 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 432027 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 431968 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 431908 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 431845 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 431786 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 431728 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 431671 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 431607 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 431549 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 431491 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 431433 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 431375 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 431316 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 431257 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 431196 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 431135 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 431075 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 431016 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 430956 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 430896 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 430831 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 430771 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 430711 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 430653 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 430594 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 430536 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 430477 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 430417 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 430357 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 430295 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 430233 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 430174 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 430116 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 430057 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 429995 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 429936 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 429877 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 429813 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 429755 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 429694 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 429634 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 429573 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 429515 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 429455 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 429394 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 429334 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 429275 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 429217 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 429156 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 429096 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 429035 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 428977 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 428916 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 428859 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 428800 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 428738 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 428677 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 428616 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 428556 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 428497 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 428437 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 428374 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 428315 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 428256 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 428193 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 428131 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 428073 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 428014 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 427955 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 427895 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 427834 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 427772 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 427711 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 427650 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 427589 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 427528 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 427470 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 427411 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 427350 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 427290 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 427229 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 427170 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 427111 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 427051 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 426992 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 426931 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 426873 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 426814 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 426753 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 426692 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 426632 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 426573 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 426513 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 137 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : TCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 447025-451656 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSC01000013.1 Sulfolobus acidocaldarius strain NG05B_C06_06 NG05B_C06_06_scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 447025 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 447087 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 447147 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 447209 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 447269 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 447329 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 447387 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 447450 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 447508 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 447567 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 447627 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 447686 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 447744 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 447803 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 447863 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 447921 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 447983 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 448043 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 448101 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 448159 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 448222 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 448280 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 448340 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 448403 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 448464 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 448521 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 448581 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 448639 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 448701 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 448759 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 448819 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 448877 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 448940 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 449003 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 449064 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 449122 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 449183 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 449243 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 449305 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 449365 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 449424 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 449482 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 449542 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 449602 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 449661 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 449722 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 449781 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 449844 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 449903 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 449960 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 450018 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 450077 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 450137 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 450196 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 450254 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 450315 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 450376 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 450435 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 450494 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 450552 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 450611 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 450670 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 450729 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 450791 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 450851 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 450911 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 450970 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 451029 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 451090 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 451153 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 451214 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 451273 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 451332 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 451392 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 451452 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 451513 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 451573 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 451633 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 78 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : CACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 24596-23938 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSC01000017.1 Sulfolobus acidocaldarius strain NG05B_C06_06 NG05B_C06_06_scaffold6_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 24595 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 24531 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 24464 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 24400 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 24338 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 24275 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 24214 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 24148 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 24086 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 24023 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 23962 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ========================================== ================== 11 25 99.6 38 GATGAATCCCAAAAGGGATTGAAAG # Left flank : GACTTAAGGTCGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACC # Right flank : ACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 52291-52012 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPSC01000016.1 Sulfolobus acidocaldarius strain NG05B_C06_06 NG05B_C06_06_scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 52290 26 96.2 36 .........................C ATATCATCATCTCTCATCATCTGCCTGCAACGTATC 52228 26 100.0 35 .......................... CACATTCATCCCTATAGACATTTATTGAAAACGAG 52167 26 100.0 40 .......................... TTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 52101 26 100.0 38 .......................... AAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 52037 26 73.1 0 T..A.G.........AA......G.C | ========== ====== ====== ====== ========================== ======================================== ================== 5 26 93.9 38 GAAGAATCCCATAAGGGATTGAAAGT # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : CGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGTTT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //