Array 1 156595-159269 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVSV01000001.1 Streptococcus anginosus strain lac lwc.s9-trimmed-pair1.paired_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 156595 36 100.0 30 .................................... AACTTTGTCAGTGATTTGTTAGGTATAGCC 156661 36 100.0 30 .................................... AGATGCGTATGCATTCTCACCCAAATTATA 156727 36 100.0 30 .................................... AGAAGAACGAGCAGTAGGCTCGGTCGTAAT 156793 36 100.0 30 .................................... CAAACGAGACGAGATTCACGCATGCAACCT 156859 36 100.0 30 .................................... CCCACATTATGCTAAACTGTAAATAGGTGT 156925 36 100.0 30 .................................... CGAATATCATGTCTTTGAGAAGCTAGCCGC 156991 36 100.0 30 .................................... CTTGACATTGTTTATAACGCTTATAACGCG 157057 36 100.0 30 .................................... CAAAGATTTGTCATTTTACACCTCCTCTTT 157123 36 100.0 30 .................................... AGAAACGCAAAAACGCCCTACAATTGTGGG 157189 36 100.0 30 .................................... TGTGAACTTTCGCCCATTTGGCGCTTGATT 157255 36 100.0 30 .................................... TTGCTGTTAGCGGTTACCCTGCCTTGCGCT 157321 36 100.0 30 .................................... GTCAGGCATTAGCATATCGCCAAAAGGATA 157387 36 100.0 30 .................................... TTGGGGCACGTAGAGTTTTGTTGCGATTTT 157453 36 100.0 30 .................................... AAGCTATCGGAAAAGAGTGGAACAAGCATT 157519 36 100.0 30 .................................... AATCCGAGAAGAGATTAGTAAGATTTCTGT 157585 36 100.0 30 .................................... AGACATTCTTTATTGTCTCGTTCTATTGCT 157651 36 100.0 29 .................................... GTCACATTGGTCGATATTGGCGATTTGAT 157716 36 100.0 30 .................................... CCTCGCCTATCGCATTCTTGATTGAGTGTT 157782 36 100.0 30 .................................... TGTTACTGGAATGAGACTAGGCGAAAGCCT 157848 36 100.0 30 .................................... AGGTAGTGGAGATAAGTTTACTGTATCTAA 157914 36 100.0 30 .................................... ATGATAAAAAACGTAGTCGATTTAAAGATT 157980 36 100.0 30 .................................... AAGATAAAGAACTAAAAAAAGCTATGAATT 158046 36 100.0 30 .................................... TTACACGAATATCTACAGATGGCGTTTTTA 158112 36 100.0 30 .................................... CGCGCTTTTTTGATATAATCATCTCAAAGG 158178 36 100.0 30 .................................... TATCCAGATGGTACGACTGTAGAATTTAGC 158244 36 100.0 30 .................................... TCCGCGCTGTTCTAAGAATCGAATTTGTTT 158310 36 100.0 30 .................................... ACCATGCTATTCCAAGCATTTTGTGCACCT 158376 36 100.0 30 .................................... TTAGCCTGATTGAGCTTTTCCTCACCTTTA 158442 36 100.0 30 .................................... TATAATAGTGTTGTGAAATTTATAACTAAA 158508 36 100.0 30 .................................... TGATTTCCAAAGAGCAAATTGCTCACGATT 158574 36 100.0 30 .................................... ATTGTGACACCGAAAGCAAATGCCGTCTAT 158640 36 100.0 30 .................................... AAACGAATTACCACCAATTTCTAGTTTTCT 158706 36 100.0 30 .................................... CTATTATCAATTTCCGAGAGCAGATAGCCT 158772 36 100.0 30 .................................... TCACGAAACAACCTGCAGACAAAATAGAAA 158838 36 100.0 30 .................................... CACAAGGTAGCTTAAAACGTAGGCATTGGT 158904 36 100.0 30 .................................... ATGAAATGTATTATGAATTTTATTGAGCAT 158970 36 100.0 30 .................................... GACTGCGATTGAGATGCTTGTTCTAGCTGT 159036 36 100.0 30 .................................... AATACTCGGTTTGCGCGTGGGGAATACATA 159102 36 100.0 30 .................................... ACAAGCGATTGAATCGATTCTCTTAATTTA 159168 36 100.0 30 .................................... TGCCGGCCAACTTTACAAATACAGTTAATG 159234 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCCGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATATGTCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : CACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTATTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGCCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTGCAGTGGGAAGTCAACAATTGCCTCCCTTCTTACTCAGCAGTATGGGCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGCTGAGACATCCAGAGGAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //