Array 1 48037-47529 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWC01000012.1 Photorhabdus noenieputensis strain DSM 25462 scaffold_0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48036 28 100.0 32 ............................ AGAACTAGCTGCTCAGTTCTTGAAGATATTGG 47976 28 100.0 32 ............................ TATACTTATTTTGGCTAGCGTAAATGAAAATT 47916 28 100.0 32 ............................ GAATGGCGTTTTTTCGTCAGCATTAAAACGCA 47856 28 100.0 32 ............................ TTTCGGCAGAGAAATAGCCATATGTTTTCTTT 47796 28 100.0 32 ............................ TTTCTTAATGATTTTCCCGTCCTCATCACGAC 47736 28 92.9 32 ..T........C................ GTCCCGAATGCTGCGGAGACGGAAAAGAAACA 47676 28 92.9 32 ..T........C................ AGTAACCTTCCGAACCCACAGAGAGAGCGCGA 47616 28 92.9 32 ..T........C................ TCTACCTACAAAAACAAAATTGTCTGTATGAT 47556 28 89.3 0 ..T........C........T....... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGTGGAGTATTAGTCTTTCTCCTGATGCATCTAAAACATATCTTGAGTGTATGAGCTCAGCGACAGCGAATGAAATTAGGTCTGTTGATAATAGAACAGGAAAAATATCTGATGTCATCACATATGGCAATGGGCTTGATATTGTGGAGTCAGGCCGATATGAGGGATATATCATCACAGAAGAACATCTGTATAAGGAAAAATCCGGATCTTACGACCGTTATTATCTTGTATCTCCGGATGGAAAGAAATCGATTCCGCTGAGTGATGAATGGGATAAGGTAGAAGATTTCTTGAAACGTAGTCGTTAGCTAAGAAAATTGTGTCAATGGTAACTTAAAAACGCGGGTATTCCTGAACCTGATTTTTAACCCTTTTTTAGCAATCAATTATAACTTATTGATTTTTAATGTAATGCAATCTCTTCTTTAAAAAAGGGTTTTTGAGCTTTTTATAAATATATTCTTTGATAGTCAGTGGGTTGGAGTTAATATGTAACA # Right flank : GACAACACTACGTTGTTTTTCTCAGACTTGCGGATAGTTCTTCTAGACGGTAGCGAGTCATATTAAGATGATTAGGGGTATACAAGTATTGGTTTATGAAAACAAGTAATGCTTGTTTTTAATATGGATTTTATTTTTATTGATTGTTAAAAATGTGACTGCTTAGACATTCTTAGATGATAGTGAAGGATATAGGGCAGAAAAGCCACCGAGTGGTGGCTGGTATGTTATTGTGCTTTCTTTCTAAAGTTATCGTCATTTTTAACGAACTCAAAAGCATCAAGGATAATACCTGTTATCCTCAATATATCTTCTGGAGCTTCTATAAATATTCTTGAGTTATTAGCGGATAATCCGGCTCTATTAACTTCGTTGGCTAATATATCCGTTAGCTCAATAGGTATCTGGATGTAAGGTTTATTCTTCTTGTCAAAGTATCTTATTATCCATCTATTTGATTTTCCTTGATAAAGAATTCCAAAGTAAGATTCTGTATCTTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTTACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 59281-60386 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWC01000025.1 Photorhabdus noenieputensis strain DSM 25462 scaffold_0025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 59281 28 100.0 32 ............................ ATGATAAATTCACCCGTCACTACGACCTTGAT 59341 28 100.0 32 ............................ TTAATTTTACCCGGTTGTGGTTTGAGTTATTG 59401 28 100.0 32 ............................ TATACCACTAACAGGTGAATTATGGACAGTTT 59461 28 100.0 31 ............................ GCACCATGCAAGTATGGTGCAAGCATCAGAA 59520 28 100.0 32 ............................ ATCACCATTTGTAAAGGCCGCTTCTTCCTGCT 59580 28 100.0 32 ............................ CCGAAAGCAAATAATTTCCGGCCGGAAGCGGA 59640 28 100.0 32 ............................ TGTTTTCGGTCACTTATCGGGCAAGCAAGCAA 59700 28 100.0 32 ............................ GCAGCGTCATTGATTGATTCAAGTAAATCATA 59760 28 100.0 32 ............................ TAAAGGCATCAGATTTATTGATAACTTTGATA 59820 28 100.0 32 ............................ ATTGCTCAGCAGTTAATGCATGTGCTTCTTCT 59880 28 100.0 32 ............................ AAGCAGTCGCTAAATCAGCAGACACAAGCAAT 59940 28 100.0 32 ............................ AACGTTAACCAAAAATCAGTGTGACAATATTT 60000 28 100.0 32 ............................ ACCGTAGAAAGCATCATCTTTATAAGCACTTA 60060 28 100.0 32 ............................ CTCGGTACCCTATATAGCTGAACAATGTGAAA 60120 28 100.0 32 ............................ GATCGCGAGGGTCGGCTTGAAGATAAACCTCG 60180 28 100.0 32 ............................ ATCAGGGGAGAGAGCGGGGGCAATCTGACCCG 60240 28 100.0 32 ............................ TTCCCAGAAGTTGTTAAGTCCATGCAGAAATA 60300 28 100.0 32 ............................ TTGGTTGATGATTTGTGTGACGTTGATTTGCT 60360 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAGGAAGCCGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTACTTAGTTTCTAATCAATGGACGAAGGGAGCCCGGCACCAATATCTAATACAAACTTAAGGAGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTGCTTTTCCAGACATCTTATAAAATCTACTTTCGCAGTTATTACAATATGTTAAGGAAAATTTGGTTATTCTTATGGTTGCTAAGTTTTGCCAGAATCTACACTTTCATTGCTATGAGGTAGGTGCTTTTGCTGTACCCCAGTTTTAACCCTTTTTTATCATCAAAAAATAACTTATTGATTTAAAAGAAAAATTAGATATCTCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTAGGTTGTTTAGGTATAAATAGGGGATTAATTGCGCAGCCTTGGGGCTAATAGCTGATTGCGGATGGATTCTGCTAGCTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGTGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTATCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAATATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGTCTTTTTTTGCTTTAATTGCGAGTGTGACTCCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8633-8245 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWC01000038.1 Photorhabdus noenieputensis strain DSM 25462 scaffold_0038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8632 28 100.0 32 ............................ TAGCGTTTAATACTCGCATGTCAGCGCGTGAA 8572 28 100.0 32 ............................ TTACCGGCTTTCGCGGCCTGGCTACGATACCG 8512 28 100.0 32 ............................ CGATAAAAGCTATACAACGTAATAAAGATAAG 8452 28 100.0 32 ............................ TGAAAGAGTCAGGGATGATACGCAGCAGGTAC 8392 28 100.0 32 ............................ CAAAGCCGATTGAAAAATCAGCGCGACGCCGG 8332 28 100.0 32 ............................ TGCACGCAATAATGCTGCTTGCTCATTTGCCC 8272 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACCATTTAATTACGCTTTGCTGGGTTATATAAGAGGTAGAGAATCAATTAACAGGGCGGCACAAAATAATATCACTCAATTTTTGCAATCTTTAGGAACAGTAGATAATAAACTTATGCCCTTTGTGGTAAATAAGTGAGAGAATTGCCATTGAGCTAATACCCCGATTTATAATTGATAGCGTGTGCTCCAAATATGTCGCTGAATAGTTACTCAGTTGATGTTGTTGGGGACGCGCTTGTTAGATGGGATTGTTGGTTCCGTGGTGAAAAGTAGTGTGACTAAGTGACAGAAGGATGGAACTCGTTATAGAAACATTGAATAGCAATGTGGTGACAATTGTTTAGGACGTTACTCTTCTTAGTTTTGACCCTTTTTTTATGGTCAATTTTAACTGATTGATTTTTAATGAAATATTACTTCTCTTGTAAAAAAGGGTTTTTTCGTTATTTAATAAATATATGCTTTAACTGTCAGTAGGTTAACGTTAATATATAACA # Right flank : CAAGAGTTTTATCCTGAGTAAGCTTTAATGAGTTGACTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTTGAAGTGGCTATTTCAGCTTTTTGTGGTAAGGCTAGTTCAATGCTCCATCATCTAGGCCAAATACGATGCTCATTGGCAGCTCATAAATGCTAATGAGTTCTAGTGCATAAGCGTGAATTTATGTATACTCGCCGCTTTTGTTAGCAAAGTGAATAATTAACCATGAATAATATTGCTGCCTTGTCTTTGGCTGCTGTAATGTTTACTAGCGGTTGCGCTACGATTGTGGGTGATAAAACTCAGCATGTTCAGGTTGATAGTAATCCATCAGGGGCCATATTCTCTATCAAAGATGAATTAGGTAGGGTTGTTGCTCAAGGGAAAACGCCCCAAGATGTGATTTTAGAAAAATCTGATGGAAGTTATTTCGGTAAAAAAGACTATCTGGTCACTTTTACTAGTGAGAATTCTGAATCTGTAACGTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 137197-135789 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWC01000003.1 Photorhabdus noenieputensis strain DSM 25462 scaffold_0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137196 28 100.0 32 ............................ CGAAGGCTGCTAACACTGTCCCGAGACTACCA 137136 28 100.0 32 ............................ CTGAATAAAGAAACAGAACACTTTTTCTCTCA 137076 28 100.0 32 ............................ GCTTGACTCATATTGACATTTCGATTTGATCA 137016 28 100.0 32 ............................ ATGACGGTTTGAACGTAAAATCAGCTCTGTTA 136956 28 100.0 32 ............................ TTTTGCTCAACATAGACAGTTCCGGTTTTACC 136896 28 100.0 32 ............................ GTTTAGAGAGGCATTCTTTATTCGACGGTGTA 136836 28 100.0 32 ............................ GGATTGGGATGATGCTTTTAAATCGGCAATAA 136776 28 100.0 31 ............................ TCGAAGAACACATTTCTGGTGGCGCACTAAA 136717 28 100.0 32 ............................ TTTGAAACCCCGCATAGCGGGAACATCGTCAT 136657 28 100.0 32 ............................ TTGGTTTGGTCAAGAATTGCGGGTTCAGTGGT 136597 28 96.4 32 .....T...................... TTTTGCATATTGTGTAACTCTTCCGCTGTTGC 136537 28 100.0 32 ............................ TAATGCTGAAGCGATTGAAGGAACCTGCCTTA 136477 28 100.0 32 ............................ AAGACCCCAAAGGCAACTGTCGATGCGGTATT 136417 28 100.0 32 ............................ TCATCGGTTAAGCGGGAACGGCGGCGAGTGTT 136357 28 100.0 32 ............................ GTACCGGGAAATTTATAATTTAGACATCGAAT 136297 28 100.0 32 ............................ ATCCTGAGATAGTTGGAACTAAGCTTAAGAAA 136237 28 100.0 32 ............................ GTTATGTACATTGACACTAAAGCCTATGGAAT 136177 28 96.4 32 ...........C................ ACAGAAAACCACTTAACCAGTATATTAGCTAA 136117 28 96.4 32 ...........C................ AGCCAAGGATGTGACGCTGTTTCAGTTCCCGC 136057 28 96.4 32 ...........C................ TTTGTTCTCTGCGTCTGTTTATCAGCATATCT 135997 28 96.4 32 ...........C................ GTGAGTTACCGCTTGAAGACGGTTTCTAAGTA 135937 28 96.4 33 ...........C................ CGATAGCATTCGGGTTAAACCTTGATTCTTCTT 135876 28 96.4 32 ...........C................ ATACGAGCTAAAAACTCCCGGTATTGGTTTGT 135816 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAACCAACGTAGGTGGTTATCGACCAGGAAAGCAGTTTCAGAGAGATTTATTTCCATAGCAATAGATAATAGAGTTTCATCTGGAAGCCAATTATCTAATATAACAACAGCGGCTGGATTACCAGAAAATGGGCTATCGGTGAATGCATCGACATGATAAATGGGTAGCGAAGTCATTTGTGTCTCTCTTAAAATATAATTAGTCATGAAAAAGGGAGCAATCTTCTTAATTTTTATAAAAAAATTACCCGCTATTTTATACAACTATATGTGATCGTAAAAAGAGTAAGCAGCTCAGTTTTAGGATATTTAGTTGGTTTTTTGAAGCATTGGGTATCATTGCATTAACCAGATGTGCGACCCTATTTTTACCCTTTTTTTGCGGTTGATTTTAACTTGTTGATTTTTATATAATATTATATGGTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGCATCTAACA # Right flank : TCGATTGAGTGCGCTAAAAAAGCAATCTATTTTCTTCTCGATATGCATCAATTGATATGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCACTTACGAGTTGGCCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGATAGCCTTTGGGCACCATTACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGTATGCAAAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCTAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGACTAGGGTAGGAACTGGTACAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 139081-138394 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWC01000003.1 Photorhabdus noenieputensis strain DSM 25462 scaffold_0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 139080 28 100.0 32 ............................ TGAATCAGCATAGCCAAAGCAGCCCGAACATG 139020 28 100.0 32 ............................ AGAAAATCGATAGAAGCATAAAGCCTTATATA 138960 28 100.0 32 ............................ ATCGTGCGACGCGAGCAATCTCATCAGGGAAA 138900 28 100.0 32 ............................ GCGTTTATTGAAGAAATTCACGATATCGAAGA 138840 28 100.0 32 ............................ ACGTGAACGTTTCAGACATTTATCTTCTCCAT 138780 28 100.0 32 ............................ ATTCATTGCCGAAATCATCCGTCAACCAATCT 138720 28 100.0 32 ............................ TGAAAAAGGAATTCGGTTCGAAGGAAGTTTCC 138660 28 100.0 32 ............................ AGCAGCGACATTGCCATTCGTAAATTCGCCGT 138600 28 100.0 32 ............................ TCCACTGAGTTTCAGTTGGATGGTCTTACCTA 138540 28 96.4 32 ..............G............. ATTTCGCGAGACGAATACGCAATTCAGCATCA 138480 28 96.4 32 ...........T................ TGCCAGCGGCTTATCTGTGATTGATGCACGCC 138420 27 85.7 0 ...........T.........C-....T | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTGCAAACATTATCTTGGTTAAAAGGACTCAGGGATTATACTGAGGTGATTGATATCAAGCTGGTACCTAAGGATGCTCGATATCGTCGTGTTAGCCGAGTGCAGGTAAAAAGCAATGTTGATAGGATTCGCCGTCGTTCGATTAAAAAAGGATGGTTAACGGAGGAACAAGCTCGGCAGTGTATTCCAATAAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAAAGCTTGTCATCAGGACAAAGTTTTCCGTTATTTGTCGAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGTTTTTAGCTCATATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : AAAAGAGTTTTGCTTTAATAGCAGAACTCTTTTTTCCTTAAGGTTTTGTATTAATAATATTAGTGACGTGTTTATCTTAAGAAATATTTAGGGAATTGAGGACGATATGCCCGTAGGAAAATAATGTAGCTTTGCCTGATAAATGTACCCGATCTCCATGCAATTCACACATAATGTTTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCGCCCCAAAATGGGGCCAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACACCCTTAGCAGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCACCTGGTGCTGTTATGACAACTCCTGGCAAAGGCAGAGTGGCTATTTTGTCAAAATTAGGTTTTGTATTTAAAACTTGTTCTGTGGTTTCGAGTAAACAAATGTAGCGATTATGAGAGACAAAAAGCTCGGATATTTTCTGACTTAATGCATTTTCGATATTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 149435-148571 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWC01000003.1 Photorhabdus noenieputensis strain DSM 25462 scaffold_0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149434 28 96.4 32 ........................A... ACATGGAAAAGAATCTCATCAAAGTCCTTAAT 149374 28 100.0 32 ............................ ACTCGATTTGTTCGTCACGCAAAGCCGTATAA 149314 28 100.0 32 ............................ ATGAAGAGATGGTGGAGTTGACTGGGTATGAA 149254 28 100.0 32 ............................ AGGCATAAATAATTGGACGGTAGCGTGGATGA 149194 28 100.0 32 ............................ TTAGCCGCAGAGCCGTGAACGTAACGGAGTTC 149134 28 100.0 32 ............................ ATTTGCTGCGTATCGAACGCATTGGTATTGAT 149074 28 100.0 32 ............................ GCTATCGGCGCAGATTGTCGGCGGTTTGTTAC 149014 28 100.0 32 ............................ AGTCAGGTGGGCATCCTTGAACAGTCGGAAGC 148954 28 100.0 32 ............................ TGAAAAAACTGACTATGATACGGCTTTAATGG 148894 28 100.0 32 ............................ TTGTTGATATGCGCCTAGATTCTCATCTTCAC 148834 28 100.0 32 ............................ ACATGATAATACGAGCGGCGTATTTTCTGAGG 148774 28 100.0 32 ............................ TACAGCAGAGAAAGATGATTGGGATAAAAGGC 148714 28 100.0 33 ............................ CCGGCGCGGAGGGCTGGCTTAATCGCTCGGGAA 148653 28 96.4 27 ........................A... CAGAAGGTTTTCCTCTTCTCCTATCGA 148598 28 67.9 0 ...TG....TAC....AT........GT | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTAAATAATCATTTTTTACCTGTAATGTTTATATTTGGTTTCATAATAACATGTAATATATATTATATCTTTAATCAAGATAATTATGTTGCTGGAAATATGAATTGGATACTTGGTAAATTGGGTAACATTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATACAACTGTTGGAATATTGGATGATGTCACTATTGAAAGAGGCTGCGAGATTAAGAGGTACTGATTTTTGTTGATAATCGAGTTCAGTGAATTGGCTTCATCATCGTTGAACGCTTTATAGGCAACAATTCTCACTTACTGCACAGATCTTAGGACAGACGACTTAAGTATGTGATGATATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTGATTGATTTTATGGATAAATTAATTATCACTTATAAAAAGGGTTTTTTCACTTTTTAGTAGCTATGCTCTTTAAAAATCAACACGTTGAAGTTAATATGTAACA # Right flank : ATAATTATTCCTGTTTAGGAAAGGTACTATGCTGTTAATTAGTAAAGAATTGTAAATTTTTTTAATTTACCTTTGTGATGTTTTACTTATGTAAAATTTATACATAGTATTTACCATAAGTTAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTCAATGGTGGCCGCGTTGAGTATGTCACTGATGAGGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATGAAGTTGAAGTTGATATATCTTGGCTGACACCGCAAAGCGAATATCGCCCTACGGAGTATTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //