Array 1 980967-983069 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039439.1 Salmonella enterica subsp. enterica serovar Kentucky strain VNSEC013 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 980967 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 981028 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 981089 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 981150 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 981212 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 981273 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 981334 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 981395 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 981456 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 981517 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 981578 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 981639 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 981700 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 981761 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 981822 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 981883 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 981944 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 982005 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 982066 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 982127 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 982188 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 982249 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 982310 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 982371 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 982432 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 982493 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 982554 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 982615 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 982676 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 982737 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 982798 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 982859 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 982920 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 982981 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 983042 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1000702-1002683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039439.1 Salmonella enterica subsp. enterica serovar Kentucky strain VNSEC013 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1000702 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 1000763 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 1000824 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 1000885 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 1000946 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 1001007 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 1001068 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 1001129 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 1001190 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 1001251 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 1001312 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 1001373 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1001434 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 1001495 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 1001556 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 1001617 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 1001678 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1001739 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 1001800 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 1001861 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 1001922 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 1001983 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 1002044 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 1002105 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 1002166 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 1002227 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 1002288 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 1002349 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 1002410 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 1002471 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 1002532 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1002593 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 1002654 29 100.0 0 ............................. | A [1002681] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //