Array 1 3975-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYON01000039.1 Aliterella atlantica CENA595 contig_472, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 3974 37 100.0 35 ..................................... AAGACGGGCAAAAGGGGCGCGATGGGCAGAAAGGT 3902 37 100.0 34 ..................................... AGAGAAGACGGCGCGTACCACTGCCATCGATGCG 3831 37 100.0 33 ..................................... AAGAAATCTGCACCTGCTGGGAAGCAAAATAAA 3761 37 100.0 38 ..................................... TTATGAGGGAACCTACCCACAGCAAACAGAGTACGAAT 3686 37 100.0 36 ..................................... TGCTGTACTAATTAATATTCCAGGATTCCAGCCAAT 3613 37 100.0 41 ..................................... AGTGTTTGCTCTACAAGCACTGATGCTAGACACGATCTAGC 3535 37 100.0 35 ..................................... ATTGAAAAATGACACGTTATCAAGGCTTGTAGTTG 3463 37 100.0 38 ..................................... ATTCTTTAATTTTGGGCGTTGCAGGAAACTTTCTAACC 3388 37 100.0 37 ..................................... ATCGCGCTTGGCTTGGTCAAGAGTGACGCGGTAGTGT 3314 37 100.0 36 ..................................... AGGATTTTGCAAAAAGTAGTATTCCTTTTCATCTCC 3241 37 100.0 34 ..................................... GCTGGGCAGCTTTAAAATAATTGGCTGTCTTTCA 3170 37 100.0 35 ..................................... GATCAATTTGCACTGATGATAAGCTTGACAGCAAC 3098 37 100.0 37 ..................................... CTGAGTTTGGCAAGTTGATCGATCTTCGGTTCCCTAC 3024 37 100.0 34 ..................................... AACAGGTGGGTAGCTAGTAGGCGGATTACCACAA 2953 37 100.0 33 ..................................... TGACAAAGGTATGGTGATAACAACTTCAGTGAC 2883 37 100.0 35 ..................................... GAAAGACTAGATGGACAGCCAGAGCCAGAAATACC 2811 37 100.0 35 ..................................... TCCACATAATCAGAAACCTCTATATCTATCCGCCA 2739 37 100.0 34 ..................................... GCAGCAGTTGCTTCGCAATACTAGCCCTGCAAGT 2668 37 100.0 42 ..................................... CGATTACGCTTTTACTTTGGGGAACCCGCGTTAAGCCTTTAG 2589 37 100.0 34 ..................................... TCTGCTTTAGAGATTAAAAGTAATCCGCTAAGTA 2518 37 100.0 41 ..................................... TCCCTAGCCTGCAATCGATCGTCCTGATAGGTGATTTTCTC 2440 37 100.0 35 ..................................... TAAAGTTGCCGACTGGCGACACTGTTTATTGTCAC 2368 37 100.0 36 ..................................... TGTAAGTAGAACTAAGCTTGATTGGGAAACAATAAA 2295 37 100.0 34 ..................................... CTGAGAGTTGGCAGGACGCAGCAAGCCCGAATTT 2224 37 100.0 33 ..................................... CAATGCCGAAGGTGGGGAAGTGCGATCGCAATA 2154 37 100.0 33 ..................................... ACTTGTATTGGCAGTTTTTAGAGTAGAAGAAAA 2084 37 100.0 48 ..................................... AAGTACAAAATCGGTAGATAATCTTAGCCTCAGATGAGGATACTGTGC 1999 37 100.0 37 ..................................... CTGCTCTGTATCTGTTGCAGGTCGCACGCCAGTAACA 1925 37 100.0 32 ..................................... TTTAAACATGGAAAACCGACAGATAAATTTTT 1856 37 100.0 35 ..................................... GAGATGCTCAAAAATGGTAGCTGCTCTTGCCACGC 1784 37 100.0 35 ..................................... AATTTCTAAAGATTCCATAAATCATTCTCTATCCC 1712 37 100.0 38 ..................................... TTATACTACACGGCGACTCATCGGAACGAATGCACTTT 1637 37 100.0 36 ..................................... GGAGACTACGAGCAAAATCATACACACCATCCTAAT 1564 37 100.0 35 ..................................... GCCTTTCGTTTTTTTTTGTGCTAGCTATCCTTAAA 1492 37 100.0 33 ..................................... TGTTCATAGGCGATCGCTCTTAATTTTCACTCC 1422 37 100.0 34 ..................................... ACCTTCTACTTAATATGAAAGGTAGTTAGAATGC 1351 37 100.0 33 ..................................... AGAAAGAGACGCAGCGATTGCAGCTTCCCGCAA 1281 37 100.0 37 ..................................... CCCGCAAGAAATAGCAGGGCAGCCCCGCCTATCATTA 1207 37 100.0 35 ..................................... TTCCTAATGGGCAAAAGATGGAAGATACCAGATTA 1135 37 100.0 35 ..................................... TTCCTAATGGGCAAAAGATGGAAGATACCAGATTA 1063 37 100.0 33 ..................................... ACCTATTTGGTTCTCATAAGCAAAATAAGTTAA 993 37 100.0 40 ..................................... ACGCCAAGGAAGCGGCTAAGAGCAGTCCAACGCGGATTCC 916 37 100.0 35 ..................................... GAAGCATTTAGCATTTCTAGCCATCGGGAAATTTA 844 37 100.0 34 ..................................... TCAGACGATGACCGCACCCCAAACCGATACCCTC 773 37 100.0 36 ..................................... TTAAACCAACTAGCAGAGGTTTATGACGGATTGGAA 700 37 100.0 34 ..................................... AAAGCCCTACGCGCTAAAGGGTTGCCTGTCGCAT 629 37 100.0 34 ..................................... TCTGCTACCAGATTGGCAAACACTGGTTTGAGTG 558 37 100.0 33 ..................................... ATGCGGTGAGAAGGATGCAATCTGAGCCTCATT 488 37 100.0 34 ..................................... CTCGGTAATACTTGGAATGCCTCATCGTGGCTAA 417 37 100.0 35 ..................................... TCTCAAGTCACTTGCGATCGCCCAACAGCCATTGT 345 37 100.0 37 ..................................... GCCAAGACTTACACTAATATCGCTAGCTTTTTCCAGA 271 37 100.0 35 ..................................... TTCTGACAAGGAGTGCTACTAGATTCCTGTGGCAG 199 37 100.0 35 ..................................... ACATAATCGCAAAGCATCGCCCATTGAATACTACT 127 37 100.0 34 ..................................... ATGATATCAAACATTTATCTTGCAATCGTCTACT 56 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 55 37 100.0 36 ATTCCAATTAATACAAATCCTTATTAGGGATTGAAAC # Left flank : TTCCGAAGACAAGCGCCGCACTAAAATTTTCAACATTCTCAAGTCTTACGGACAGTGGGTACAATTGAGCGTGTTTGAGTGTTGCAACTTGACTGACACGCAGTATGCTAAATTGCGATCGCGTTTAAGTAAGGCAATTCAGCCTAATGTAGATAGCATCCGTTTTTATTTTCTTTGTGGTTGCTGTCAAGGTAAAGTAGAACGCATTGGCGGCGAACAACCCCGCGACGAGACTATATTTTTTGCTACTAGCGCGGATGGGTAGGTGTTGAGGCGAAGTTTTTGCAAGAATGCCATGAGATGCTTGGCGTGTAGGAATTTAGGAGCTAAGGGAGGATTAATGTATTCGCGCGTTTGCTGAGATGTATGTATAGCAATGTTTTCGTTGGATTGTCACTGTGTGTCCTACGAGCGTTTAGGGGAGTGGATGATATAATCGTTTTGGTTTCGCGCGATCGTACCTTGAAAACTAAATATCGTAAGGTTTTTAGCAGCCAGCG # Right flank : CATTGCTCGACTGCAAGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCAATTAATACAAATCCTTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 22586-34465 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYON01000018.1 Aliterella atlantica CENA595 contig_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 22586 36 100.0 36 .................................... CGCACTTTAGCTGTAGTATGGCGTTTGCTATATGAA 22658 36 100.0 38 .................................... CAAAGAAGCTCTTTTAGCAGTAAAGCAAGGGTTAAAAG 22732 36 97.2 43 ...T................................ AAAAGTCAAAACATCTAAGATAGTACCAGAAGGTAAAATCCAA 22811 36 100.0 42 .................................... TGCATCATTTACTTCTACACGTGGTAATTTGATAACTTTCTC 22889 36 100.0 43 .................................... AAACGTATTCATACTAGCCCACCTACTAGGTTAATGTAAATAG 22968 36 100.0 37 .................................... ATGACTTAGCGGCAGCATTAGTCATGACCAATAGAAT 23041 36 100.0 38 .................................... TGTGGCAGCGGGTACAACGACCATAGACTGCTATTCGC 23115 36 100.0 38 .................................... ACGTAAAGAAGGATATGTTACAGAGAGTTTCACTTTAG 23189 36 100.0 40 .................................... GGATGTTGAAACCTTTGTCAGCTAAGAAAGCGATCGTCTT 23265 36 100.0 36 .................................... GGTCTTTGTGGTAAATACCAACGGATCTTTTTACGA 23337 36 100.0 38 .................................... AAGCGGCGGTATGAAGCCAACGACTTGCGAGTAGGTTT 23411 36 100.0 39 .................................... TTATCTAAATGCTTAGAGAAACTATATCGAGACTTATCA 23486 36 100.0 35 .................................... TACCATACTGCAAACCTTTGTGTTCTGCCTTAATA 23557 36 100.0 40 .................................... ATCAGTTATTGAAGTTAGCAATGCTTTTGGTAGTAAAGCA 23633 36 100.0 39 .................................... TTTTTAGCTCGTAAAGAAGATTAGCAAATTCTTCCTTAG 23708 36 100.0 39 .................................... ATTTGGATTAACAAATGCTGGTCCAGAACCAGAGGTTAA 23783 36 100.0 37 .................................... ATCTTAAAGTTATTGCAGGAACACAAAAAGTTTATAT 23856 36 100.0 42 .................................... ATAATGTATATTCTCTCAGTCTGGTTTTTTGCTTTTACACTT 23934 36 100.0 39 .................................... GATGTGCTCCAAAACCTAATACTTTTGCGCTTTTGATGG 24009 36 100.0 38 .................................... ACCATTATCTTTGGTAATGTCGAAAGAGATGCCATCTG 24083 36 100.0 38 .................................... AAAGTCCAAGAAAGGCTAGCAACTATTGGTACAGGCAA 24157 36 100.0 40 .................................... CAGACAGAAACTTTAGGGCATTTACACATCTTTTTATTAG 24233 36 100.0 35 .................................... TAAAATCTTCACTTCCATGAAATAGAAATACTTTA 24304 36 100.0 40 .................................... AAAAGTTGTGACAGCAGCTATGTTTCCATAGCTCTCAGTT 24380 36 100.0 40 .................................... ACACAAATACTCCTATTGCTACTGTTTGATTTGTTTTAAT 24456 36 100.0 37 .................................... TAAAATGGAATCTAAATTTAACATTTTAGAATCTAAA 24529 36 100.0 42 .................................... GTATTGTTTCTGCCAAATGTACATTTGTTCTCTAGCAGAGGT 24607 36 100.0 39 .................................... TTTATCCCCAAAACAAACTAAACACTACAAGGGGGTAAG 24682 36 100.0 36 .................................... ATCTCTAAATAAATGATACATTACTGTATCAAGTCT 24754 36 100.0 36 .................................... ACAATAGGTTGATGAGCTTTTTTACCCGTACCAATA 24826 36 100.0 38 .................................... CAAGGATGTGTAATGATAATCCACACAGATAGAGGCTA 24900 36 100.0 36 .................................... GCTAATGTAGTTGGACGCTCTAAGTCTGCTTTTCGT 24972 36 100.0 41 .................................... ATAACCAAACTTTAATTATGTATTTTGATGCTTCCATTATT 25049 36 100.0 37 .................................... AAGTTAACTCAATATGGCGATCGATAGAAGTATTTAT 25122 36 100.0 37 .................................... AATACTGTCTTGCGGCTAAGAGCTTCTAGAATTCCAA 25195 36 100.0 35 .................................... GATAGTAAGAAAGCCTACATTCTAGGTCATCTAAA 25266 36 100.0 37 .................................... AGGTCCGAGCTAGGTTTATTTACCAACACTCCTTCCT 25339 36 100.0 36 .................................... TGGAGATACCTGGTTTAAACATCCCTAAAGAGTTTT 25411 36 100.0 36 .................................... GAGGTTTTAAATTAACTTCTCACATTACTGTTTATT 25483 36 100.0 36 .................................... CTGTTTCTACCCAGCGATCGCGCTCGGCTTTGTCTA 25555 36 100.0 37 .................................... TGATACATTACTGTATTAAGTCTAGATGAATTATATT 25628 36 100.0 35 .................................... GACTCTTTCTTAGATAGTGCTTTATCGTTAGGTAG 25699 36 100.0 39 .................................... AACAGAACTAGGAGTGCGGTTAGTTGCCAGTGCTATACC 25774 36 100.0 36 .................................... GTCGCCTCGGTAGCGTTTCGGTGCTTCGGGCGGAAA 25846 36 100.0 39 .................................... GTTAAAGTCGTAGCTACGGGTGAATATACTTGAAGTACT 25921 36 100.0 36 .................................... TTATATGGGCTATGATTGATTTAATCGTCAATTCAT 25993 36 100.0 37 .................................... CGCTCACCAACTTCTTATGCAAAGCTAGAAGTCCCAA 26066 36 100.0 40 .................................... AAGCGATCACGCGCTGCTCGTCAGCTACACCTTTAGCCCA 26142 36 100.0 39 .................................... AGTTAGAAGCGGAGCGATCGTCGTTTGGGCTTCTCTAAG 26217 36 100.0 37 .................................... AGGAAAGTAGCTCAAGCTACTTTGTTTTGCGGTACAA 26290 36 100.0 38 .................................... AATGCAAGCAAACGATAAAGGAATATTGTATTCCTTTG 26364 36 100.0 37 .................................... TCTTTCAATGCAGTTTGTGGATTAAACACAATATCAC 26437 36 100.0 39 .................................... ACAGCAGCTATGTTTCCATAGCTTTCTGTTTGTTTGATG 26512 36 100.0 39 .................................... TCTCTACATAGATAGCATACTTAGCATCGTTAGTAATAC 26587 36 100.0 36 .................................... AGCCGAGCTTGCTGACGAATATGGTAGCTTTGACAA 26659 36 100.0 38 .................................... GTAGGGTAAGCCGACTTGCTCAGGTGCTATGTATTGTC 26733 36 100.0 44 .................................... GGCACAATTCGAGTAATGCGATCGCTGAATGGATCAATTGATGT 26813 36 100.0 36 .................................... ACACGTACCAGCTAACCTACGTGTCATAACCACTAA 26885 36 100.0 35 .................................... TTAAATTGCCGTCGGCTAAAGCGTCAGCTAAAGAG 26956 36 100.0 37 .................................... ACCAATGCTATAGAGACTTTGAACTCTTTAGACTACT 27029 36 100.0 40 .................................... TACTTAAACCGTAACCTACTACTGCATAAGCTATCTGAGG 27105 36 100.0 38 .................................... TCATCAAATATTTCGACAGCACTTCACAAACCGATAGA 27179 36 100.0 38 .................................... AGTTGGAGGCTGGTGAAAATGTAGCAAACACTCTCAAG 27253 36 100.0 37 .................................... CAAAGACTATCAAATTGTTTTAATTTTGATAGTTTTT 27326 36 100.0 42 .................................... TAAACCGCAATCGTTAATTGCAGCAACTAAAGCTTTTGGTAA 27404 36 100.0 42 .................................... CTCTAAACCTGTTTGCCAAGCTAATTCTTCATCAATGTAGTT 27482 36 100.0 38 .................................... GAACATATGTCATGTACCGTACTACCCTTAGCACGGCT 27556 36 100.0 38 .................................... TAGACATAAGAGAGTACCTGCGTATAGGTGTACAATAA 27630 36 100.0 37 .................................... AATGACCGTATTACCCGTTTGATGAATTTCTCCTAAA 27703 36 100.0 11 .................................... TGGTATTGCGA Deletion [27750] 27750 36 100.0 38 .................................... TCGTTATCTAAAGTAGCACCGTAGTTCTTCGCTTTAGT 27824 36 100.0 36 .................................... CGTCTTGTAGGTGTTCTAAAACTTGAAGATATTTAT 27896 36 100.0 39 .................................... TCTAAAGGCTAGCCTTCTAGCTGGTATACATAACACATA 27971 36 100.0 44 .................................... TCATCTCGCCAAGGTAGTGAGCAATCAAAAATAAAGTCTAAGTC 28051 36 100.0 41 .................................... ACAAAGAGTGACGTGCTAGCATTGACGCTGAATTACTTATA 28128 36 100.0 35 .................................... ATAAACATTCCAATTAGTAGACTCTCTCTTATCAA 28199 36 100.0 34 .................................... ATCATCTAAGATTTGTAGCGCCATTTCTTTTGCT 28269 36 100.0 39 .................................... GCTTTAGCTGTGCGGGAGTAAGGTAAGTTACAGTAGCTA 28344 36 100.0 37 .................................... GCAAAAGTTTTATTTTGAAATCTTCAAATGGATAGGA 28417 36 100.0 37 .................................... AGACAAAACAAGTTGGGGTTTCGATTCCATAGTAAAA 28490 36 100.0 41 .................................... AGTCATCGTAGTAGCTACCTTTGTCTAGCGACTTAACTGTG 28567 36 100.0 41 .................................... TTGTTATATAATATTCTAACAAAAAGAAAAATAGTACAAAG 28644 36 97.2 38 ...A................................ TTAAGAATACCTAAATAACAAAAAAAGGACCACTTTAA 28718 36 100.0 39 .................................... ACCTACAGCAAAAACTATTGAAGACATTCGATCGCATTA 28793 36 100.0 37 .................................... TAGCGCTTCAGTAACTACTAAAGATAAGCGCTTAGTC 28866 36 100.0 49 .................................... CAGGAGTGCCAGTAAGTTTTAGTGTCTTCCATACAGGATAAGTTACAGG 28951 36 100.0 38 .................................... ACGATGGAGAATATCACGGTTACTGGCTGAAAAGCCCA 29025 36 100.0 38 .................................... GATATTCCTTTAGCCAATTTGAGAGTGCAGCCGAAAGA 29099 36 100.0 36 .................................... TAAAATAAGTTTGTCAGAAATACAAACAACTTTGAA 29171 36 100.0 36 .................................... CACTGATAAATTTTCATAAGGTGCAGCAGAAATTAG 29243 36 100.0 40 .................................... TTAACAATCAAACTAAAAAAGAAAGTTAAAGGTTAAACAA 29319 36 100.0 40 .................................... CCACCATTGCATATAATACTTCTTCGTTGCGTAAGTCTTT 29395 36 100.0 38 .................................... TTATTGAGATTAAAATAAGTTTGTCAGAAATACAAACA 29469 36 100.0 39 .................................... GAGTTTCTGGTTAGAACGTAAGTTTAAAACACTTATTAA 29544 36 100.0 39 .................................... TCAAGTAGTAGAGCATTGCGAAGAGAAGCGATTTTGGTT 29619 36 100.0 37 .................................... GGTTACTGTGCGTGCTGGTTGTGCGGACATGCAAGCA 29692 36 100.0 43 .................................... TTTAGATTCTAGAGATTGCAGAGTTTCTCTGATATCTTTACAA 29771 36 100.0 41 .................................... ATTTCGCTAACTCTGCTTCTTTCAACAACAACAATCAAGAG 29848 36 100.0 42 .................................... CTGGTCCAGCATTTGTTAATCCAAATCTAACTTTAGATGTTT 29926 36 100.0 40 .................................... ACGTCCGTAGTCTGTTCATCCATAGGGTAAATGAGTTGGT 30002 36 100.0 38 .................................... GACCAAATGCTCAAAGCTCAGGACGCAGCCATCTTTAA 30076 36 100.0 39 .................................... TTAACATGATTATTAACATACTCAAAGGGTTGTTTGGTA 30151 36 100.0 40 .................................... CCCTCCTGCAACGAAAAAATTAGACAGTAAATTATTTACT 30227 36 100.0 37 .................................... GGTTAGACTTTGAGTGCTTTCTAGAAGACGTAGGAAA 30300 36 100.0 38 .................................... CTCTTACGAGTAACATATGGCTTAGGTGTTTCCATTGT 30374 36 100.0 39 .................................... GGTACAGTTGTATTCTTGGCTAACAACGACCTAAACCAA 30449 36 100.0 36 .................................... ATATCAAAGAAGATGTACATGTTATTAAAGAAGACA 30521 36 100.0 39 .................................... GTAGTAAGCCTTTTTGGAGGATTCTAACATTTTGTTGAT 30596 36 100.0 38 .................................... ACCTTTATGGGCTGACTCTACCAGAACCTTTCCAGAGC 30670 36 100.0 40 .................................... GGAAGGAGTAATATCTGCTTCCTCAGTTCTCCAGAAACTC 30746 36 100.0 40 .................................... ACTACATCGATAGTTTTCCAATACTTAGGTACTTCGTTCA 30822 36 100.0 38 .................................... TTCGTCAAAATCAATCTCTAAGCTAACGCCTAAAGCTT 30896 36 100.0 36 .................................... GTTAACCGTACTAAACTATTCACCTGCAATAGTGAC 30968 36 100.0 40 .................................... GCAAGAAGTCTGACCGCGCCCTATTCTATCAAAATCTCCC 31044 36 100.0 40 .................................... AAACCAAATAAATGGTTTGATTTAATTAGAGGAATTAATA 31120 36 100.0 38 .................................... TTTAGCAGCGTAACCAGGAGTAATATGAGGATTTTCAC 31194 36 100.0 37 .................................... CTACTTGGAATAAATCTTATCTAGATAAACGTACTAA 31267 36 100.0 37 .................................... CGAAAAAAGGCTTAGGTATCACTAACGATGCTAAGTG 31340 36 100.0 39 .................................... CATCACCCTTAGTGTAGTATCTACCAGCTTTTACAGTTT 31415 36 100.0 37 .................................... TTAGCCACAGCTTGAGCATCTGGGCAGTTGTTTAAGT 31488 36 100.0 37 .................................... TTGATAGTTTCTGTTTTATCTACATAGCCTTTAACTG 31561 36 100.0 38 .................................... ATTACTCAAAACAAACAACCAGTTTTAAATATTTTAGA 31635 36 100.0 36 .................................... TGATGCATCAGGGTTAGTTAATCCAGCATCAGTAGA 31707 36 100.0 40 .................................... TTGGAAACAAGAGTTGTTTCTGCTCGTCAAGAACGTGTAG 31783 36 100.0 37 .................................... TTTATATTGAAATGGTGTTAATCTTATAAATGCTTTA 31856 36 100.0 40 .................................... TCCATGAAAAGTGAATACTGTTTGATTCTCTTTTTTGTTT 31932 36 100.0 37 .................................... CTCTTGTTCTTCATCTTTAGGAAGAACCTCAGTTTGT 32005 36 100.0 39 .................................... TCCCAACAAATTTGTTTACAGGGATAGGAGGCTTATGGA 32080 36 100.0 36 .................................... AAGAGCGTTTAGCAGCTATTGGTACAGGTAAGAAAG 32152 36 100.0 39 .................................... CAAATTCAATTTTGTACTTCATTTGTTTCTATCCAATCT 32227 36 97.2 40 ..............T..................... TTTTTGGGAGGATTAGCGCTAGTGAAGTAATTTAAGCAAA 32303 36 100.0 38 .................................... TTTCATCTGTCGTCCAATATCCTACATGGTTAATTGTT 32377 36 100.0 45 .................................... AAAGTTAAATGGGGAACCGACTACAAATCCTTTGAGGAGTGTATG 32458 36 100.0 37 .................................... GCACTACCTGCTGATGCTTGTCCGCTGTCAGAGGAAG 32531 36 100.0 38 .................................... ATCTTCCGCAACGGTTTCTAGTTCGATATCGTTTAGTT 32605 36 100.0 37 .................................... AACTCAATTACTAATTCTTCTAAAGTGACTGCCATAA 32678 36 100.0 37 .................................... CATTTGCTCTGTGGGGAATGTAACCGTATAGCTTAGT 32751 36 100.0 42 .................................... TGACGTCTTTACGCAATAAAGCCTGTTCGCCTTGTTTTTTGT 32829 36 100.0 38 .................................... TGATTTATCAGCAGCATCTACTGACTCGGTTTGAGGCA 32903 36 100.0 36 .................................... CGACTATGCGATTAGTCGTGAGATTAACTAATGTGA 32975 36 100.0 38 .................................... GCGACTCCTTGGATTGTTTGCTTTTTATTGCTTCTAGG 33049 36 100.0 35 .................................... CAAACAATAAAAACCAAGTAACCGCGCCAAAAGAT 33120 36 100.0 36 .................................... ACGCTTTCGACGACAACATAGCCAAACAACTAAAAA 33192 36 100.0 37 .................................... ACCGCCGCAAATTTCTTAGTCGTCATTTTGTGGCAAC 33265 36 100.0 36 .................................... GACAAAGTAGCATCTTGATAAATTACCGCTTTAAAC 33337 36 100.0 36 .................................... GGAAACGTCTTTTGTAACCCACCTGGTGGAAAGTTA 33409 36 100.0 35 .................................... GCTCTTCTTTAGACATAAAGTCTAGTCCGATAATA 33480 36 97.2 38 ...............A.................... GAACTGCACCCGACCCTTCGCGTTTCATTGCGTCTTGG 33554 36 100.0 36 .................................... TTATGACTACAAAGGTAAGCTTTATATTAAACATAG 33626 36 100.0 36 .................................... TGGTCTTTTTGGTTGCTCTTGTAATTGTCTTACTAA 33698 36 100.0 36 .................................... CCCAATATAATGGTTTGTTTCTATCTATGATGTACA 33770 36 100.0 36 .................................... CTGCTACCATACCTACGCTAATTCCAATCGATACGC 33842 36 100.0 41 .................................... CCTTCAACTACTGACGAGATGAGGCGTTCTTTCTGGTCGTA 33919 36 97.2 35 ...................................G CCGATTACTACACAAATAGCGAATCTACTGAAAAA 33990 36 97.2 41 ...................................G GATCGCAAACTCAGCTTCCAAGTCTTGAATGCGACGGTCTT 34067 36 94.4 37 .............................G.....G TCTAGCGTCTCATCAATGCAACCAAAGCGATCGCACA 34140 36 94.4 37 .............................G.....G TAAGAATCATGAAAACTCACAAAATTGCAGTTGAGTA 34213 36 94.4 36 ...............A...................G CTGTTGATAGTTTCTTACAAACTTTGCATTGATACC 34285 36 97.2 37 ...................................T AATTCCTCGTCTATGTAATTGTCATCAGCAAGATAGA 34358 36 100.0 36 .................................... TAGAAAAACTGAATGTTGGGCGGTGACAGGACGCAG 34430 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 161 36 99.8 38 GTTCCTATTAATTAGGGAAATTATTTGAATGGAAAC # Left flank : TCCCAAGCAGCTTTATTTGCCCTATCAAATTCGTTAGTAATGTTGTTCTATTTAGTGGTGTATGATATTCCATGCGATCGGCGGCGTAAGAAAGTATCTGATTTATTAGAAGGGTACGGGCAAAGGGTACAATACAGTGTTTTTGAGTGTTTTTTAACGCAAGTTCAGTATGATGAATTGCGAAAAAGATTGAGGAAAAGGGTAAAATTATCAGAAGATAGTGTGAGGTTTTACCCATTATCTAAGCATACTTTTAGTCAAGTAGAGGCATGGGGTGGCTTTCCAATTACAAAGATTCCTGGTTCGGTAATTATTTAGCGATTAGCTGCGAGGTTAGGGTAATATGCCAGAAATTAAGTAAATACGTTGCGAACCTCGAAGCAGTGCAGTATAAAGTTTTGAGCTATTATTTTTCACCAATGCTATCTATTTTTCCTAGTAAAATCAGCAACCCTCGCAAACTGGTAGTGGACACCAGGCTGGATATAGGTTTAAATTGG # Right flank : CTTAAAGAAGCGATCGCCCTACACTCTAAAAACAATTGTTCCTATTACTAACTCGCAACTTTTAAATCCTTTATTGGTACTGGGAAAGCCAACAAATCTAGTTGAGCTACGCCATTGACGATCGCCACAATTGCAAACGGCTCCCACTGCTGCAAATAAGCTAAAGTCGGCTTGTACTCTACTAACCGGACACGATCGCCTACTCTAAAACTAGCACTATGCTGACTGCGAAGATTATTAATCGCGATCGCCAACTCCCTAACTATCGCCAACCACGCGCTAGTTAGCCTTAAATCTAACTTTTGACCCAAAACCTGGAGATACTTCTTAATTTCTGCCGTACTGCTGCACCCAGAACGTTGAAAAGACCGCTTTTTTGCATCTTTAAACCTAATGCGTTGCTTATCGCTGTAACGGGCGCGACGTTGAGGCGTTATTAGCCGCCACACCACTACAGTAATTAAACCAGATTGAAACTCTAAATCCTGCTCTGCTTCAAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTATTAATTAGGGAAATTATTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //