Array 1 4067122-4066553 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIY01000001.1 Yersinia kristensenii strain NCTC11471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4067121 28 100.0 32 ............................ ATGACGAATGTGACCGGCGCACTCGTTTAATT 4067061 28 100.0 32 ............................ ATCTTCGCCAAGCCATTCAAGCTCTACAGATA 4067001 28 100.0 32 ............................ AGACGGCAAAGCAAAATAATCAGCCAGCACTT 4066941 28 100.0 32 ............................ AGTCAGCGGCAACCAACACTGGCGACCGGTCA 4066881 28 100.0 32 ............................ AGTCAGCGGCAGAGGTGTCTGGATCGCAATCT 4066821 28 100.0 32 ............................ GCCTACAACAGCCAGCCGGATAACATTGTTGT 4066761 28 100.0 32 ............................ TGGATGGTGTCGGTCTGCCGTACCAGCAGAAG 4066701 28 100.0 32 ............................ AAGTAAACGCGAACCAATGGCGGCTAAATTAT 4066641 28 100.0 32 ............................ GTGAAAATAGCGATTACAACGTGCAAAAGACC 4066581 28 92.9 0 ...........T........T....... | T [4066558] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGGTTCAATATCGGGTCGTGCGCCGCGTGCAGGTAAAAAGTAATGCGCAGCGGCTACGCCGTCGTTCTGTCAGTAAAGGCTGGCTGACTGAGGAAGAGGCTCTATTACGGATCCCTGATAATCGCGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGCGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTATTCGTGTTTCGTTACT # Right flank : TCTATCCGGCGTCTTATTTCTCCTTTTTCGTTGAATACCTCTAAAGAGGTATATGTTTGATTTTATGTAAAAATTGTTTGGTGCTGATTTTTTTTGAGCTGGTTCATAAAATTAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATTTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4076424-4075614 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHIY01000001.1 Yersinia kristensenii strain NCTC11471, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4076423 28 100.0 32 ............................ AATTATCGACAATTGGGATGAGCTAACCACGC 4076363 28 100.0 32 ............................ TCGGCGAGCTACAATCTGTAGCTGACTTCTTC 4076303 28 100.0 32 ............................ TTTTATTCTACCCATTCAACCGTGATAAACGG 4076243 28 100.0 32 ............................ TGATTTATAAGGCAAAAAATATCATTCATGGC 4076183 28 100.0 32 ............................ TCACCGCGCAAATCAACATCCACCTGACGAGC 4076123 28 100.0 32 ............................ TCCTCAGCATCACCACCAGCCGCCTATATGGC 4076063 28 100.0 32 ............................ GCACCGTTTACAGCTGCCTTTCTTCAACTCAT 4076003 28 100.0 32 ............................ TAACGGTGTGCATCGTGCCAGAGAGAAACAAA 4075943 28 100.0 32 ............................ ACCTTGTCGGTAACTTGCATCAGAGGCTGCTA 4075883 28 100.0 32 ............................ TGTCGTCCTGACTGGCGCGGCGAGTAATCCTG 4075823 28 100.0 32 ............................ GAATATTAAAACGAGCAAACTTTAGGATAAAG 4075763 28 100.0 32 ............................ AGAAATGATGCTCAGTGATTTACAACGCTGGT 4075703 28 96.4 32 ...T........................ AGTTAAGACGAACTGCAATAGCGACGAGGAAG 4075643 28 85.7 0 ...........T.........A....TT | AC [4075617] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTCTCCTGCTTGTTATCCTTGCTTAACCCCTTGAAATACCTCAATTTTTAATCGGTCATATTTATTCTTTCTGATACAACAAAACGAGCAAAACCCGCCCCAAAATAGTGAACTATAACTTTTTCAAACCTCCTTTTTGTCCGTCACATCATCCGCAGTAGAAAAGGTTTAATGACATTTTGCCTTAATCCCAACTTGAACCCTTTTTTTAGCGTGTTTTTTAACGCATTGATTTTATATAGAAATCCCCAAGGCTTTTAATAAATCATTTTTTATCACCGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : GAGAGCCCAAACACATTTTGTTACTTACAGTAGGCTTATTACTGTTTTCTATTACCGACTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGGCGCGCTCACTGACTGGCAAGATACAATTAACCCGTTAGAACGATTTGGGTGTTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTAAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGTGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTCATCATGTTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGCGCACCACTTTTTGCGGCGAATGAAGTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //