Array 1 2557-3118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALY01000248.1 Petrotoga halophila DSM 16923 P-halophila_contig_218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2557 30 100.0 36 .............................. TCAGCATTCTCGATTGAACGTATTTCTGTGATCCTT 2623 30 100.0 35 .............................. CCCATACATATCGCTTGAATATTCAATTAGAATAT 2688 30 100.0 35 .............................. AAGTCATAGTTGTATATTATGTTGACTTTAATTGG 2753 30 100.0 36 .............................. ATTTTTGAAACAACCTTTCAAATATATTCGGCATTC 2819 30 96.7 37 .................G............ TTGTCATCCAACTTTTTGGCTGCACCAAATATTGCTT 2886 30 93.3 39 .................G........G... TCATCATCAGAAATACCAGTGGTATTTCTGTTTTCTTTC 2955 30 96.7 36 .................G............ TTTTTTAAAATTGCAACTTCGCCGAGTGCATATATT 3021 30 90.0 38 .................G........GG.. CCACTTTCGAGAGCTATATGCATCATCCCTGCGTGACT 3089 30 90.0 0 .................G..........GG | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 96.3 37 CTTTTTATCCTACCTATAAGGAATGGAAAC # Left flank : GGTGTTGCGGGTTACCAGTGGATAAGTATCGGAGGATTTGTGGTCGACAGCTCTGCTGGTGTAAATGCAATTTTTGGTGGGCCAATACAACCAATCACATATCCTGGGTTCGTTTTTGCTGTAGGATATGGATGGTGAGCTCTCTTTGAGGTCTTCTTCATCAGCAAATCGATCGAGTTAAAATTTCCGTGATGGAGTTCAAGGAAGCTTTTCAGATCAAAATTCTGATAGGAACATGGGTTTAATCTTTTTGTTTGAATATATTACTTAGACTTAAGGCCGTTGATAAAAACTTCCAAAAGGGTAGTCTTTTAATTTATTTTTTCATGTCATGTTATTTTAACAGCATAGATTTTATTGGCTCTCTTTATCAACTTATTTTTTAGTGCCTGAATAACTATCTTCTCTTTTACATATTTGAATTGATTTTTAACAATTTCTCAAAGTTTTGCTTGACAATCGTAATTTTTTATGATATAGTGATTATAGGTATTTTATGC # Right flank : GGTTAGAGAGGAATGGAAGATGGGTGGAGAAATGTAAAGTAGGGAGAGAATCGGAAGTGGTAATTAGGAATATAGGAATTTGAAACGATGGAAAAGGGTGAATGCCCGATTTTTCGTTGGAAAGTAGGTTGAATGCATAGGACTTAGGAATCTATGAGCAAGAATTTTTTTTGGAAAACAATTTTAGGTAGAAAGAAAATGATAAGATACAATACTTGTTCTTTGACTTGTAAGAAAAATTAGAAAAGAAATTAGACTTTTTAGTCAAAAAATATTATTGCTGATGTGGAAACTTTTTATAGTAATTACTAGAAAAAGTACCAGTGAAATCTTTTTTCGGAGGGCTAAAATAAATGAAGAAAAAAGAAATTAAGCTTAATTTCATTACACTTACTCCTCTGTGGAATGGGAATGTCTGGAATAGAACTGACCAATTACGAGCTTCAGAACTTTTTGGAAGTTTGCGTTTTTGGTTTGAAGTAATTTGTTATTTTTCAGGA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATAAGGAATGGAAAC # Alternate repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1761-403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALY01000308.1 Petrotoga halophila DSM 16923 P-halophila_contig_206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1760 30 100.0 37 .............................. AACTCATAACTAAAGACTTTAGTAAAAATCTTTTAAA 1693 30 96.7 36 .....A........................ ACATACCAGAAGCATCTATATATCCTTCAAAAGCAG 1627 30 96.7 36 .................A............ TTGGAGAAGAAGACTACTACCTTTACCCCATCGTTG 1561 30 96.7 36 .................A............ TAATTCACAGTATATATCAAATCATACATGGTTATA 1495 30 93.3 37 ...C.............A............ TCGTGTAATTTAGTAACACCAGATTCTCTTCCTTCAT 1428 30 96.7 36 .................A............ TTGCTAAATATTCTGATTTGTCATGATTAATTAGTG 1362 30 100.0 39 .............................. TTTGCTTTGCGGCATTCTTCTATAATATTCATCGAAAGA 1293 30 100.0 35 .............................. GCAGGCATAATGCCCATGTTCGTAAGATCCACCAG 1228 30 100.0 35 .............................. ATAAGCGTTACAATGATTCAATGATGTTTTAGAAA 1163 30 100.0 39 .............................. CCGATACTGTGCCAGCTATTTTTGTATCTTCTCCAAATA 1094 30 100.0 36 .............................. TTTCAAGAAATATAACAGTTGAAGGATTTGTATTTG 1028 30 100.0 36 .............................. ACTTGATTCTTGATTTCAAAGCATCGTTGATAATTT 962 30 100.0 39 .............................. TCCCAAATCTGTCAAGCCATTCTAAAAACAATTTGTATG 893 30 100.0 36 .............................. CTAGCTATTAAGGTGTCATAAACTTGCTTTGGGCTA 827 30 100.0 34 .............................. GTAATATTTTTATAGAAGATTCAAAAGAATTAGG 763 30 100.0 36 .............................. TTCAGTACAAAACTTCTTTGAATAACTGTCATTTCT 697 30 100.0 35 .............................. AGGCTTTTGATCAATATTCTTAGTTGATTCAATAA 632 30 100.0 36 .............................. TGAAAAAGGGCGTACTGTACAGGTTCAACAGGTTCA 566 30 100.0 35 .............................. TTAGATCGACTTCCAGAAGCTCCGTGTGCAGATGC 501 30 100.0 39 .............................. GTGCCTGTTGAGGGATCTATTTTTTTGACTGTATCATCA 432 30 86.7 0 .................A.........GGA | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 98.4 36 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : AGTCTATTCTATCAACCATATTTGACAAAGAGCCAAGTTTTACTTGACAATCGTAATTTTTTATGATATAGTAATTATAGCTAACTTATA # Right flank : ATGGAGAGAGGAATGAAAAGCTGGGGGAGGGAAAGAAAAATATTCCAAGTTTTAAATTATCTGAAATAAGAGATTTATCGAAGTAGTTTGAGTAAGCTGATTCTATACTAATGCCAAGTATTTAAACATTAAGTTTGCTCTTAAAAATATCACTCCTTTGTTGTGAATGTTCACAGCAAGGAGTGATTTGTTTTTGTGAAGTGCTTTATAAGATATTTTTTTTGACTCACTTAGAAAAATAATGGGGAATTTAAACTGGAGTTAACTAACTTTACCAATGGAAAAAGGGGACAAGATATTTTGTTGCATAAGAGGAGTTTATAATTGAATAATTTATTCTTCTAATGATTAAAAGAGTATTTTTCATTTGTTTATAATTCATTTTTTACAATCCAACTTTTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3219-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALY01000316.1 Petrotoga halophila DSM 16923 P-halophila_contig_252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3218 30 100.0 36 .............................. AATACAAATACGGACCTTTGTTAAACGAGCAAATGA 3152 30 100.0 36 .............................. ACGAGATAGCAAGCAGTATCGGGCGAGTAGCTCCAC 3086 30 100.0 35 .............................. CTGAGTCTCATGCTATTAGAAGAGCTTTTGATTTG 3021 30 100.0 37 .............................. TCTCAAATCCAAATAAAGTTCCAGAATGGGCTAAAGA 2954 30 100.0 35 .............................. ACATTTAAAACGCAACAAAACATTCAGCAAAACGA 2889 30 100.0 36 .............................. ATTATAGTAGTGATAATGTTCTATCAGCTTTAACGA 2823 30 100.0 37 .............................. GTAGTTCGAGCAATGGCTAAACTGCAAGAGCATAAAA 2756 30 100.0 35 .............................. TATTTTTTTCTTTTTAGCATACTTAATGGTTTTAG 2691 30 100.0 37 .............................. TCTTCTTGTTTCAAGACTTTTATAACACGGTCGTCAA 2624 30 100.0 35 .............................. GCTCTTTAACTTTTTCTGTTCTTCCCATTTTTTCC 2559 30 100.0 38 .............................. TTTTTTCGTTCTCAGCCTTTATGTTCTTTGTTGCTTCG 2491 30 100.0 36 .............................. TCATTATCCGCACCTTCTAACAAAGCTATTAATTCA 2425 30 100.0 36 .............................. AGTATTTCGTTATCATTCTGCATGCTTGTACCTCTC 2359 30 100.0 38 .............................. AACCGAAAGAAGTAGAGCAGTATGGAGAATATATTTGG 2291 30 100.0 36 .............................. GTGACCAATGTATTCTGAAATAATCATTTGAAACGC 2225 30 100.0 38 .............................. ACCTCTTTGTAAAACGCTCTGTATTGAATTTTTTAAAG 2157 30 100.0 38 .............................. GCTTCTTCCATTTTTTCTATAGCTTTTAAAACTTCTTC 2089 30 100.0 35 .............................. TAGACTACAAAGTAGAAATCCCGCCAATTTATTAC 2024 30 100.0 35 .............................. CTGTACAAGCTTGCCAATTGTTCAGGTTTGAATTC 1959 30 100.0 36 .............................. TGTCAACCCATGTATTTCCGTCTGTAAAATTTACTA 1893 30 100.0 37 .............................. TACACTTGACACAAATCAAATTAAAGTAAATCTCATA 1826 30 100.0 36 .............................. CAAAAAAGAAGAATAGAGAAAAAGCTATTCAAGAGT 1760 30 100.0 36 .............................. AAATAAATCACCAACAAATAAAAGAAATAATAGAAG 1694 30 100.0 36 .............................. TTTCTCCAGTATCTTCTATTTTTATATACTCTCCAC 1628 30 100.0 35 .............................. TGCCTTTCTCATCTGCTATTTCTTTTAACTCTTTA 1563 30 100.0 36 .............................. TCGAAAAAACCGAAATCGGTTCAACCGAAATCGGCA 1497 30 100.0 36 .............................. TATCCATCATCTAAACCTCCAATCTCTTACTTTTTA 1431 30 100.0 36 .............................. AATAGCTTTCTTATGCCTTTTGCAAAATTGTCTCTA 1365 30 100.0 36 .............................. TCAGAAAAATTAAATAGCTCATCTTCAACATCACAT 1299 30 100.0 37 .............................. TTGGTTGCACAAATGGAATTGAACGCAAGCGATTATC 1232 30 100.0 38 .............................. CTTTCATTTGAAATAGCTATTATTGCCATTTTCCATTC 1164 30 100.0 36 .............................. ATGAATAGTGCAAGTGAGTACGAAACATATTTAAAA 1098 30 100.0 37 .............................. TGGAATCAGAGCATAAAGCAAAAAGCGATGGAACTAT 1031 30 100.0 37 .............................. TATCCAGTTGTGATTTCAATCAAGTTTTCTCCATTTT 964 30 100.0 37 .............................. TTTTTGCGCTTGTAATAGCCATGAACTCAATATCTTC 897 30 100.0 37 .............................. TTCTTTTCATACGTGATTAGATCAATATTCATTACCT 830 30 100.0 37 .............................. TTCCATTTCTCAATCTTTTGTTTTTCTTCTGGAGTCT 763 30 100.0 36 .............................. TAAAATAGATGTATTCATTGCTGAAAGACAAAGCGA 697 30 100.0 38 .............................. TTCTGATGCTGAACTTACACAAGAAGAACTCGAAGCAA 629 30 100.0 36 .............................. TAAGAAAATCCCCGATGATCCGATAATCAATGAAGC 563 30 100.0 36 .............................. GAGAAAGAAGCTAAAAAAAGACAAGCGATTGGATAT 497 30 100.0 37 .............................. TTGTCCCTCCAGGGCACAAACTAGTCGGAGTAGACGC 430 30 100.0 37 .............................. CACCACGGGAACCTACAGATTGATATGGGGTTCCTAG 363 30 100.0 36 .............................. CCAAAAGCTTCAGTTTGATGTCTAAAAGCCATCCTG 297 30 100.0 37 .............................. TATACACTTGCCCTTCGTTTCTATCGTGCTCTAATAA 230 30 100.0 38 .............................. TAGACAAAGATTTTCCAGATTTTATGAATGTAGTTTCT 162 30 100.0 36 .............................. CTATCGTTTTTATCCTCCTCCCCTTTTTGTTCTAAG 96 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 48 30 100.0 36 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : TTTTATTATACAGCCGAAAGTATAAAAAATGTCTGTCGACCTCCAATAAGGTAAAAATCCCAGGGGATCGACAGACAAGTGTTAAAAATCACAAACCTTATATCATGCATATTTGAATTGAATTTTAACAATTTCTCAAAGTTTTGCTTGACAATCGTAATTTTTTATGATATAGTATTTATAGTTATCTTATG # Right flank : CAAGGTATTGAAAAAGATAATGAAGTAACAGAGGACTTCTTTTTATCCTTACCCACTTCAGAAATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1271-242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALY01000331.1 Petrotoga halophila DSM 16923 P-halophila_contig_303, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1270 30 100.0 37 .............................. TAAGTTTAGATCTCTTATAAAAGGATTTAGGTATTCT 1203 30 100.0 36 .............................. GGAGGGATATAACAATAGTCAATAAATACCCTATCA 1137 30 100.0 37 .............................. AAATTAAAAAAATGGAGGCAGAGAAATGGCAGTCAAA 1070 30 100.0 36 .............................. TCTCCATATCAGCCTCATATTTGTTTATGAGATCGA 1004 30 100.0 36 .............................. TGTTCAGAACAGCTCCATCTAAAGCCCATTCTTCTC 938 30 100.0 35 .............................. GTTGCTTTGATTATATTGCCTTGTGAATCGTACTC 873 30 100.0 36 .............................. CTTTTCAAAATTTCATGATCAATGCTTGGATAATAG 807 30 100.0 36 .............................. TATTATATATACCAAAAAAAAGAAATTTTTTAAAAT 741 30 100.0 38 .............................. GCCAAATCATCAAGACTTTCGAGACCCAAATCCATCCT 673 30 100.0 39 .............................. AGTTTTAGTTTGTTGTGCATCTTCCTGCCTCGAAACAGA 604 30 100.0 37 .............................. CCCCCGTTATGAGAATAAATCATATAGCCACTAAATG 537 30 93.3 36 ....................A...A..... TTTATCATTGTAACGGGCTTTTCGTCCGATATATTA 471 30 100.0 37 .............................. CAAATTTTCTTATATCTTCATTTGAAGATTTACATAA 404 30 96.7 38 ..........................G... CCACTTTCGAGAGCTATATGCATCATCCCTGCGTGACT 336 30 96.7 35 .................A............ AATATATCCCAGTCTCTGAGCTCTGATATGTCATA 271 30 90.0 0 ..............A.............GG | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 98.5 37 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : TGGTGATTGCCAATCTAAGGTAAGGATGAGTTAAACCTTTCTCTAGGAAAAAGGTCATTATAAATCCAAGAAGAAAAGACCCAAGAACATTAACTATTAAAGTACCATAAGGTAAAACACCCTCAAGTTTCAAGCTTACCCACCTCGAAAGCAAAAATCGACTAATCGCTCCAAAAAATCCTCCTAACCCTACAAAGAAAATTTCTACCATATTTGGCTCCTTTCTTTTTCCAAAGATCTTTTAACATTATTATATATTATAATTATTCAAAAACAAAAAAAGTTATAATATTTACAGCGACCTTAAAATAGAAGATAAAGAAAATAATAAAAAAGTCTGTCGATCTCCAATAAGGTAAAAATCCTAGGGGATCGACAGACAAGTGGTAAAAGTCACAAGCATCATATCATGTATATTTGAATTGAATGTTAACAATTTTTCAAAATTTTGTTTGACAATCGTAATTATTTATGATATAGTATTTATAGATATCTTATGC # Right flank : GGGTGGAGAGGAATGAAAGAGGTGGAGATAGGAAGGAAAGTTGTAGGTAGGAATGGAAGTGGAAAGGCGAATATTGGAATTTGAAATGATAGAAAAGGTGAAGGTTCGATTTTTCTTTCTGAAGTAGGTTGAATATATAGGATTTTATTAAGCTATCTATGAGAAAGAATTTTTTTGGAAAACAATTTTAAATAGGAAGAAAAAGAGAAGGATAATATACTTTACTTGTTCCTTGACTTGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1228-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALY01000335.1 Petrotoga halophila DSM 16923 P-halophila_contig_316, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1227 30 96.7 37 A............................. AGTCATAGACTCTGCCTTTCGTTAGACCTAATATTTC 1160 30 100.0 37 .............................. TTTGTTCAAGCTCTTTTATTTCTGCTTCAAGCTTTTC 1093 30 100.0 39 .............................. TTTCTTCACGGCTGTATTTTTTCAATTCTAAAAATTCCA 1024 30 100.0 37 .............................. CATCAAAAGAAACTACTTTAGAAGCGCCTTTCTTAGC 957 30 100.0 37 .............................. GTAGTGAAGGACGTTTGTATTCGTTATTGTTTTCAGT 890 30 100.0 36 .............................. TGCGATACGTCGAGCGTTCGATTTAGGAGGACTTTA 824 30 100.0 38 .............................. TTGATGATCGATTCGATGTAGTTATGAGTAATGGTAGA 756 30 100.0 38 .............................. TTTTATGAATATTATCAAAACAATACTCATCTCATCAA 688 30 100.0 35 .............................. AGTGATGATGAGAAAGAGTTTTTAAACCCTTATCG 623 30 100.0 37 .............................. TTCAAACGGCTTATAGATTATTTCTTGAATGGCTTGA 556 30 100.0 40 .............................. CCGCTTGGATCGCCCGGGTATTCCAAAAGATCGCCACCAA 486 30 100.0 37 .............................. CAAACGAAAGTTATAATAATATAATTCTTTTCTCAAG 419 30 100.0 38 .............................. TAGTCTACGAAGACAAAATTAATGTTTTGGTATTTAAC 351 30 100.0 35 .............................. GTATATTAGAAAGTTTGAAAAGGCAAAAAGAGTGG 286 30 100.0 40 .............................. GCCATTTCCTTTTCACTTTCGCCATTGAAAAAGCCTTCTA 216 30 100.0 36 .............................. GATGGAAGAAGCTACCGAATTCACTATGCAAGACTT 150 30 100.0 38 .............................. ACTGTAGTTACTTGTACCACCTTGTAAATTAGTTATAC 82 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 99.8 37 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : AGTTTCTAAAGACAG # Right flank : CCTATCGTTTTTATCCTCCTCCCCTTTTTGTTCTAAGCTTTTTATCCTACCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1180-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALY01000336.1 Petrotoga halophila DSM 16923 P-halophila_contig_318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================== ================== 1179 30 93.3 37 .................A...........T TGATTTACGTTTAAAATACAAAGAAGAAGATAATAAA 1112 30 90.0 40 .................A......A....T ACTATTTCGATACGCTTTTCAAGTGTAAAAGCTGCTCCCA 1042 30 93.3 36 .................A...........T TCTACAAGCTGCTTCCATACTTTTTCTTGTTCTTTG 976 30 93.3 37 .................A...........T CTGGCTTTACTTAAACGTATTGAAGAAGTTGAGGAAC 909 30 90.0 37 T................A...........T CTGGCTTTACTTAAACGTATTGAAGAAGTTGAGGAAC 842 30 96.7 37 T............................. AAGAGAAATAGAGTAAGTCTGAAAGTCTAAATTAGCT 775 30 100.0 37 .............................. CAATTAGATTAGTTTAAGCTTTTTAAGCTCATGATGA 708 30 100.0 36 .............................. ATGTCAGTATAACAAAGTATAACATCCCAATTGTCA 642 30 96.7 37 .................A............ CCGGCATCAGCTTCGTTCCAACCATTCGCAAGGCCAC 575 30 96.7 39 .................A............ CGTTGACTTGGTAGACACATACCTTTCAGCGTCAAATGA 506 30 86.7 56 .................A.........GGG TGGCGGGAGGAATGGAAACTCTTACATCCTTTGGATTTACCCGCTAATGGAGAACC 420 30 100.0 35 .............................. TTGGATATCAATACAAAAAATCAACAATCTTACAA 355 30 100.0 36 .............................. CACAACCTTTTGATAGGATACCGTTATTGTTGTTGA 289 30 100.0 36 .............................. AATTCAAAGCTTCTAAAGTTGTTTGAGTTGCAAAGT 223 30 100.0 36 .............................. CTTGAGCAAGTGTCGCTTGAGTTGCGAAATCTTTAC 157 30 100.0 38 .............................. ACTGTAGTTACTTGTACCACCTTGTAAATTAGTTATAC 89 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================== ================== 17 30 96.3 38 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : CCAAAGATTTCAATAATGCTCCAGGAAAAAACATTTCAAAAGTTAAACCCTTTTTGACTCCTGGAACAAGAGTTACAGGAGAACGAGAATATGAGGCAGAATTAAATTACGATGGTACTCTTATAAACATTAAAAAAAGAAGAACAGGATGATAATTGAAAGAGTTATAGAAGAAGCACAACCTTATTTAAAAGGATTAAAGATCAAAGATACGATTATAGGAATTTCACTTATCGGGTTAGAAATTAGTAATAATCACGTATTTTAAATTAAAAATCAAGGTCTCTCTTGTAATATATTTTATTAACATAAAAAGCAGGAAGGTATGAAAAAATGTCTGTCGACCACCAATAAGATAAAAATCCCCGGGGATCGACAGACAAGTGTTAAAAATCACAAGGCTTATATCATGCATATTTGAATTGATTTTTAACAATTTCTCAAAATTTTGATTGACAATCGTAATTTTTTATGATATAGTATTTATAGCTATCTTACGC # Right flank : CTAAGCTAAAGCTGTTTCTAGGTTCATTAGATGATCTGGGTCCTCTTTTTATCCTACCTA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : CTTTTTATCCTACCTATAAGGAATGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 11-490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALY01000253.1 Petrotoga halophila DSM 16923 P-halophila_contig_171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================== ================== 11 28 96.4 40 .........T.................. ACACTGTAGTTACTTGTACCACCTTGTAAATTAGTTATAC 79 28 100.0 45 ............................ ACTAAGCTAAAGCTGTTTCTAGGTTCATTAGATGATCTGGGTCCT 152 28 100.0 42 ............................ ACGTTCTTCTTCTAAAATTTTAATTTGCTTATCAATTTCTTC 222 28 100.0 41 ............................ ACCTGACTTGAATTTAAACATTTTAGTATTTATATCATATA 291 28 96.4 58 ...........................G GGGTTGGAGAGGAATGGAAACCCACCAATTCGAATTCTTCCAACCATGTGTCCTGACC 377 28 100.0 58 ............................ GGTAGGGGCGAGGAATGGAAACACTGATGGTAAGTCTGTAAATATTCAAGCTCTTCAG 463 28 85.7 0 ........A....A....G.....A... | ========== ====== ====== ====== ============================ ========================================================== ================== 7 28 96.9 48 CTTTTTATCCTACCTATGAGGAATGGAA # Left flank : AAAGATTTATC # Right flank : AGATGAGGAGAGGAATGAAAACAATACTATCTCTCAGCTTCCAAGTAATCTTTCCTTCCTACTAACCTTATTTTAATGAACTGAAAGTAGGAAAGAAAAGATAACCTGTAAATGTGAGGCTTTTTTTCTTCCTTTTGTTCAAAAAGAGATGAAGAAGAGAAAGGAATGGAAGGTGGGAGTGAGGAATGGAAACCTGTGTAACCGTTTGACTTCTTTTAAAATTCTGGATTTTTTATCCTATCTTTTCTTTGATGAATATAAATATTCTCAAATCATCTCCATTTTTCTTAACTTCATAGATTTTTATTCTAACAATAAGAAATTGAAACATTTTTTTAAAGCATCTTTCTTGTTTCTTCGCTTTTTTTCTTATCCTAAGAGCAAATCCACAATCAGATAAAGAAAAATATTTAAAGTATTACATTAGAAGAGCTAAAATTGTTACTGAAAGCTAATGCAAATTAATGAATTTTTTTAGATTTTTAGATGATATAATGGGG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //